| | Editorial Nucleic Acids Res. 2005; 33(21): 6673. Published online 2005 November 27. doi: 10.1093/nar/gki966.PMCID: PMC1297703 Articles An obligate intermediate along the slow folding pathway of a group II intron ribozyme Linhui Julie Su, Christina Waldsich, and Anna Marie Pyle PMCID: PMC1297705 The genetic map and comparative analysis with the physical map of Trypanosoma brucei Annette MacLeod, Alison Tweedie, Sarah McLellan, Sonya Taylor, Neil Hall, Matthew Berriman, Najib M. El-Sayed, Michelle Hope, C. Michael R. Turner, and Andy Tait PMCID: PMC1297707 Simulation of non-specific protein–mRNA interactions James Magee and Jim Warwicker PMCID: PMC1297708 Identification and characterization of high affinity antisense PNAs for the human unr (upstream of N-ras) mRNA which is uniquely overexpressed in MCF-7 breast cancer cells Huafeng Fang, Xuan Yue, Xiaoxu Li, and John-Stephen Taylor PMCID: PMC1297704 Glucose repression of the Escherichia coli sdhCDAB operon, revisited: regulation by the CRP·cAMP complex Tae-Wook Nam, Young-Ha Park, Hye-Jin Jeong, Sangryeol Ryu, and Yeong-Jae Seok PMCID: PMC1297706 The effect of osmolytes and small molecule on Quadruplex–WC duplex equilibrium: a fluorescence resonance energy transfer study Niti Kumar and Souvik Maiti PMCID: PMC1301592 Lack of MSH2 involvement differentiates V(D)J recombination from other non-homologous end joining events Mani Larijani, Ahmad Zaheen, Darina Frieder, Yuxun Wang, Gillian E. Wu, Winfried Edelmann, and Alberto Martin PMCID: PMC1297709 Improved alignment of nucleosome DNA sequences using a mixture model Ji-Ping Z. Wang and Jonathan Widom PMCID: PMC1310902 An autoregulatory loop controlling orphan nuclear receptor DAX-1 gene expression by orphan nuclear receptor ERRγ Yun-Yong Park, Seung-Won Ahn, Hye-Jin Kim, Jin-Man Kim, In-Kyu Lee, Heonjoong Kang, and Hueng-Sik Choi PMCID: PMC1301593 The interaction site of Flap Endonuclease-1 with WRN helicase suggests a coordination of WRN and PCNA Sudha Sharma, Joshua A. Sommers, Ronald K. Gary, Erica Friedrich-Heineken, Ulrich Hübscher, and Robert M. Brosh, Jr PMCID: PMC1301591 A genomic approach to the identification and characterization of HOXA13 functional binding elements Colleen D. McCabe and Jeffrey W. Innis PMCID: PMC1301594 MPP6 is an exosome-associated RNA-binding protein involved in 5.8S rRNA maturation Geurt Schilders, Reinout Raijmakers, Jos M. H. Raats, and Ger J. M. Pruijn PMCID: PMC1310903 Krüppel-like zinc finger protein Gli-similar 2 (Glis2) represses transcription through interaction with C-terminal binding protein 1 (CtBP1) Seong-Chul Kim, Yong-Sik Kim, and Anton M. Jetten PMCID: PMC1301595 A study on the correlation of nucleotide skews and the positioning of the origin of replication: different modes of replication in bacterial species Christoforos Nikolaou and Yannis Almirantis PMCID: PMC1301597 Analysis of repetitive element DNA methylation by MethyLight Daniel J. Weisenberger, Mihaela Campan, Tiffany I. Long, Myungjin Kim, Christian Woods, Emerich Fiala, Melanie Ehrlich, and Peter W. Laird PMCID: PMC1301596 Cell-penetrating peptide conjugates of peptide nucleic acids (PNA) as inhibitors of HIV-1 Tat-dependent trans-activation in cells John J. Turner, Gabriela D. Ivanova, Birgit Verbeure, Donna Williams, Andrey A. Arzumanov, Saïd Abes, Bernard Lebleu, and Michael J. Gait PMCID: PMC1301599 CTCF binds the proximal exonic region of hTERT and inhibits its transcription Stéphanie Renaud, Dmitri Loukinov, Fred T. Bosman, Victor Lobanenkov, and Jean Benhattar PMCID: PMC1301598 A conserved and species-specific functional interaction between the Werner syndrome-like exonuclease atWEX and the Ku heterodimer in Arabidopsis Baomin Li, Nathan Conway, Sonia Navarro, Luca Comai, and Lucio Comai PMCID: PMC1310904 SNEV is an evolutionarily conserved splicing factor whose oligomerization is necessary for spliceosome assembly Johannes Grillari, Paul Ajuh, Guido Stadler, Marlies Löscher, Regina Voglauer, Wolfgang Ernst, Janet Chusainow, Frank Eisenhaber, Marion Pokar, Klaus Fortschegger, Martin Grey, Angus I. Lamond, and Hermann Katinger PMCID: PMC1310963 The polypyrimidine tract-binding protein stimulates HIF-1α IRES-mediated translation during hypoxia Bert Schepens, Sandrine A. Tinton, Yanik Bruynooghe, Rudi Beyaert, and Sigrid Cornelis PMCID: PMC1310900 Down-regulation of interferon regulatory factor 4 gene expression in leukemic cells due to hypermethylation of CpG motifs in the promoter region Christina A. Ortmann, Andreas Burchert, Katharina Hölzle, Andreas Nitsche, Burghardt Wittig, Andreas Neubauer, and Manuel Schmidt PMCID: PMC1310901 Distinct roles for two RAD51-related genes in Trypanosoma brucei antigenic variation Chris Proudfoot and Richard McCulloch PMCID: PMC1301600 The naturally trans-acting ribozyme RNase P RNA has leadzyme properties Ema Kikovska, Nils-Egil Mikkelsen, and Leif A. Kirsebom PMCID: PMC1310964 Visualization of bidirectional initiation of chromosomal DNA replication in a human cell free system Kathrin Marheineke, Olivier Hyrien, and Torsten Krude PMCID: PMC1310965 Transcription regulation of the EcoRV restriction–modification system Ekaterina Semenova, Leonid Minakhin, Ekaterina Bogdanova, Maxim Nagornykh, Anatoliy Vasilov, Tomasz Heyduk, Alexander Solonin, Marina Zakharova, and Konstantin Severinov PMCID: PMC1310966 Methods Online Faster quantitative real-time PCR protocols may lose sensitivity and show increased variability Chelsey Hilscher, Wolfgang Vahrson, and Dirk P. Dittmer PMCID: PMC1297710 Allele quantification using molecular inversion probes (MIP) Yuker Wang, Martin Moorhead, George Karlin-Neumann, Matthew Falkowski, Chunnuan Chen, Farooq Siddiqui, Ronald W. Davis, Thomas D. Willis, and Malek Faham PMCID: PMC1301601 Enhancing the efficiency of a PCR using gold nanoparticles Min Li, Yu-Cheng Lin, Chao-Chin Wu, and Hsiao-Sheng Liu PMCID: PMC1297711 Rapid and efficient cDNA library screening by self-ligation of inverse PCR products (SLIP) Roger A. Hoskins, Mark Stapleton, Reed A. George, Charles Yu, Kenneth H. Wan, Joseph W. Carlson, and Susan E. Celniker PMCID: PMC1301602 |
