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Volume 29(7);  April 1, 2001
Survey and Summary
The RAG proteins in V(D)J recombination: more than just a nuclease
Moshe J. Sadofsky
Nucleic Acids Res. 2001 April 1; 29(7): 1399–1409.
PMCID: PMC31291
Articles
All Tcf HMG box transcription factors interact with Groucho-related co-repressors
Helen Brantjes, Jeroen Roose, Marc van de Wetering, and Hans Clevers
Nucleic Acids Res. 2001 April 1; 29(7): 1410–1419.
PMCID: PMC31284
Enhancement of translation by the epsilon element is independent of the sequence of the 460 region of 16S rRNA
Michael O’Connor and Albert E. Dahlberg
Nucleic Acids Res. 2001 April 1; 29(7): 1420–1425.
PMCID: PMC31293
Monitoring the structure of Escherichia coli RNase P RNA in the presence of various divalent metal ions
Mathias Brännvall, Nils E. Mikkelsen, and Leif A. Kirsebom
Nucleic Acids Res. 2001 April 1; 29(7): 1426–1432.
PMCID: PMC31289
Monitoring S phase progression globally and locally using BrdU incorporation in TK+ yeast strains
Armelle Lengronne, Philippe Pasero, Aaron Bensimon, and Etienne Schwob
Nucleic Acids Res. 2001 April 1; 29(7): 1433–1442.
PMCID: PMC31278
The human XPG gene: gene architecture, alternative splicing and single nucleotide polymorphisms
Steffen Emmert, Thomas D. Schneider, Sikandar G. Khan, and Kenneth H. Kraemer
Nucleic Acids Res. 2001 April 1; 29(7): 1443–1452.
PMCID: PMC31292
Evidence for regulation of protein synthesis at the elongation step by CDK1/cyclin B phosphorylation
Annabelle Monnier, Robert Bellé, Julia Morales, Patrick Cormier, Sandrine Boulben, and Odile Mulner-Lorillon
Nucleic Acids Res. 2001 April 1; 29(7): 1453–1457.
PMCID: PMC31266
Site-specifically located 8-amino-2′-deoxyguanosine: thermodynamic stability and mutagenic properties in Escherichia coli
Lata Venkatarangan, A. Sivaprasad, Francis Johnson, and Ashis K. Basu
Nucleic Acids Res. 2001 April 1; 29(7): 1458–1463.
PMCID: PMC31287
Comparison of intron-containing and intron-lacking human genes elucidates putative exonic splicing enhancers
Alexei Fedorov, Serge Saxonov, Larisa Fedorova, and Iraj Daizadeh
Nucleic Acids Res. 2001 April 1; 29(7): 1464–1469.
PMCID: PMC31294
Hybrid characteristics of oligonucleotides consisting of isonucleoside 2′,5′-anhydro-3′-deoxy-3′-(thymin-1-yl)-d-mannitol with different linkage modes
Zhen Lei, Ling Zhang, Liang Ren Zhang, Jun Chen, Ji Mei Min, and Li He Zhang
Nucleic Acids Res. 2001 April 1; 29(7): 1470–1475.
PMCID: PMC31276
SfiI endonuclease activity is strongly influenced by the non-specific sequence in the middle of its recognition site
Shelley A. Williams and Stephen E. Halford
Nucleic Acids Res. 2001 April 1; 29(7): 1476–1483.
PMCID: PMC31285
Methylation by a mutant T2 DNA [N6-adenine] methyltransferase expands the usage of RecA-assisted endonuclease (RARE) cleavage
Irina Minko, Stanley Hattman, R. Stephen Lloyd, and Valeri Kossykh
Nucleic Acids Res. 2001 April 1; 29(7): 1484–1490.
PMCID: PMC31273
DNA methyltransferases of the cyanobacterium Anabaena PCC 7120
Andrey V. Matveyev, Kathryn T. Young, Andrew Meng, and Jeff Elhai
Nucleic Acids Res. 2001 April 1; 29(7): 1491–1506.
PMCID: PMC31280
A single alteration 20 nt 5′ to an editing target inhibits chloroplast RNA editing in vivo
Martha L. Reed, Nemo M. Peeters, and Maureen R. Hanson
Nucleic Acids Res. 2001 April 1; 29(7): 1507–1513.
PMCID: PMC31290
Target gene search for the metal-responsive transcription factor MTF-1
P. Lichtlen, Y. Wang, T. Belser, O. Georgiev, U. Certa, R. Sack, and W. Schaffner
Nucleic Acids Res. 2001 April 1; 29(7): 1514–1523.
PMCID: PMC31279
Transcriptional adaptor and histone acetyltransferase proteins in Arabidopsis and their interactions with CBF1, a transcriptional activator involved in cold-regulated gene expression
Eric J. Stockinger, Yaopan Mao, Martha K. Regier, Steven J. Triezenberg, and Michael F. Thomashow
Nucleic Acids Res. 2001 April 1; 29(7): 1524–1533.
PMCID: PMC31267
Ribozyme minigene-mediated RAD51 down-regulation increases radiosensitivity of human prostate cancer cells
S. J. Collis, A. Tighe, S. D. Scott, S. A. Roberts, J. H. Hendry, and G. P. Margison
Nucleic Acids Res. 2001 April 1; 29(7): 1534–1538.
PMCID: PMC31295
Trends in lipoplex physical properties dependent on cationic lipid structure, vehicle and complexation procedure do not correlate with biological activity
Marilyn E. Ferrari, Denis Rusalov, Joel Enas, and Carl J. Wheeler
Nucleic Acids Res. 2001 April 1; 29(7): 1539–1548.
PMCID: PMC31288
Characterization of uracil-DNA glycosylase activity from Trypanosoma cruzi and its stimulation by AP endonuclease
M. Esther Fárez-Vidal, Cláribel Gallego, Luis Miguel Ruiz-Pérez, and Dolores González-Pacanowska
Nucleic Acids Res. 2001 April 1; 29(7): 1549–1555.
PMCID: PMC31275
Trypanosome spliced leader RNA genes contain the first identified RNA polymerase II gene promoter in these organisms
Gwen Gilinger and Vivian Bellofatto
Nucleic Acids Res. 2001 April 1; 29(7): 1556–1564.
PMCID: PMC31286
Enhancing the catalytic repertoire of nucleic acids: a systematic study of linker length and rigidity
Sarah E. Lee, Alexander Sidorov, Thierry Gourlain, Nathalie Mignet, Simon J. Thorpe, John A. Brazier, Mark J. Dickman, David P. Hornby, Jane A. Grasby, and David M. Williams
Nucleic Acids Res. 2001 April 1; 29(7): 1565–1573.
PMCID: PMC31265
Different dynamics in nuclear entry of subunits of the repair/transcription factor TFIIH
Fabio Santagati, Elena Botta, Miria Stefanini, and Antonia M. Pedrini
Nucleic Acids Res. 2001 April 1; 29(7): 1574–1581.
PMCID: PMC31283
Mitochondrial DNA ligase function in Saccharomyces cerevisiae
Sarah L. Donahue, Brian E. Corner, Laura Bordone, and Colin Campbell
Nucleic Acids Res. 2001 April 1; 29(7): 1582–1589.
PMCID: PMC31271
Highly expressed and alien genes of the Synechocystis genome
Jan Mrázek, Devaki Bhaya, Arthur R. Grossman, and Samuel Karlin
Nucleic Acids Res. 2001 April 1; 29(7): 1590–1601.
PMCID: PMC31270
Phylogenetic analysis of tmRNA genes within a bacterial subgroup reveals a specific structural signature
Brice Felden, Christian Massire, Eric Westhof, John F. Atkins, and Raymond F. Gesteland
Nucleic Acids Res. 2001 April 1; 29(7): 1602–1607.
PMCID: PMC31281
Identification of thermophilic species by the amino acid compositions deduced from their genomes
David P. Kreil and Christos A. Ouzounis
Nucleic Acids Res. 2001 April 1; 29(7): 1608–1615.
PMCID: PMC31282
GenEST, a powerful bidirectional link between cDNA sequence data and gene expression profiles generated by cDNA-AFLP
Ling Qin, Pjotr Prins, John T. Jones, Herman Popeijus, Geert Smant, Jaap Bakker, and Johannes Helder
Nucleic Acids Res. 2001 April 1; 29(7): 1616–1622.
PMCID: PMC31277
Identification of 10 novel snoRNA gene clusters from Arabidopsis thaliana
Qu Liang-Hu, Meng Qing, Zhou Hui, and Chen Yue-Qin
Nucleic Acids Res. 2001 April 1; 29(7): 1623–1630.
PMCID: PMC31268
Cooperative binding of effectors by an allosteric ribozyme
Antony M. Jose, Garrett A. Soukup, and Ronald R. Breaker
Nucleic Acids Res. 2001 April 1; 29(7): 1631–1637.
PMCID: PMC31269
Ku80 is required for addition of N nucleotides to V(D)J recombination junctions by terminal deoxynucleotidyl transferase
Mary M. Purugganan, Sundeep Shah, John F. Kearney, and David B. Roth
Nucleic Acids Res. 2001 April 1; 29(7): 1638–1646.
PMCID: PMC31272
ParAlign: a parallel sequence alignment algorithm for rapid and sensitive database searches
Torbjørn Rognes
Nucleic Acids Res. 2001 April 1; 29(7): 1647–1652.
PMCID: PMC31274
NAR Methods Online
The length of telomeric G-rich strand 3′-overhang measured by oligonucleotide ligation assay
Graziella Cimino-Reale, Esterina Pascale, Eva Battiloro, Giuseppe Starace, Roberto Verna, and Ettore D’Ambrosio
Nucleic Acids Res. 2001 April 1; 29(7): e35.
PMCID: PMC31296
Detection of mitochondrial single nucleotide polymorphisms using a primer elongation reaction on oligonucleotide microarrays
Fikret Erdogan, Roland Kirchner, Wolfgang Mann, Hans-Hilger Ropers, and Ulrike A. Nuber
Nucleic Acids Res. 2001 April 1; 29(7): e36.
PMCID: PMC31297
Assembly of large genomic segments in artificial chromosomes by homologous recombination in Escherichia coli
Margherita Sosio, Elena Bossi, and Stefano Donadio
Nucleic Acids Res. 2001 April 1; 29(7): e37.
PMCID: PMC31298
Manufacturing DNA microarrays of high spot homogeneity and reduced background signal
Frank Diehl, Susanne Grahlmann, Markus Beier, and Jörg D. Hoheisel
Nucleic Acids Res. 2001 April 1; 29(7): e38.
PMCID: PMC31299
A GFP-equipped bidirectional expression module well suited for monitoring tetracycline-regulated gene expression in mouse
H. E. Krestel, M. Mayford, P. H. Seeburg, and R. Sprengel
Nucleic Acids Res. 2001 April 1; 29(7): e39.
PMCID: PMC31300
Efficient gene activation in cultured mammalian cells mediated by FLP recombinase-expressing recombinant adenovirus
Masakazu Nakano, Kazuhiko Odaka, Masakazu Ishimura, Saki Kondo, Naoto Tachikawa, Joe Chiba, Yumi Kanegae, and Izumu Saito
Nucleic Acids Res. 2001 April 1; 29(7): e40.
PMCID: PMC31301
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