| | Other Issues: previous | next | latest | archiveMethodology Reports SSR Locator: Tool for Simple Sequence Repeat Discovery Integrated with Primer Design and PCR Simulation Luciano Carlos da Maia, Dario Abel Palmieri, Velci Queiroz de Souza, Mauricio Marini Kopp, Fernando Irajá Félix de Carvalho, and Antonio Costa de Oliveira PMCID: PMC2486402 Blast2GO: A Comprehensive Suite for Functional Analysis in Plant Genomics Ana Conesa and Stefan Götz PMCID: PMC2375974 Research Articles Bayesian Functional Data Clustering for Temporal Microarray Data Ping Ma, Wenxuan Zhong, Yang Feng, and Jun S. Liu PMCID: PMC2358942
Coe1 in Beta vulgaris L. Has a Tnp2-Domain DNA Transposase Gene within Putative LTRs and Other Retroelement-Like Features David Kuykendall, Jonathan Shao, and Kenneth Trimmer PMCID: PMC2426827 The Generation Challenge Programme Platform: Semantic Standards and Workbench for Crop Science Richard Bruskiewich, Martin Senger, Guy Davenport, Manuel Ruiz, Mathieu Rouard, Tom Hazekamp, Masaru Takeya, Koji Doi, Kouji Satoh, Marcos Costa, Reinhard Simon, Jayashree Balaji, Akinnola Akintunde, Ramil Mauleon, Samart Wanchana, Trushar Shah, Mylah Anacleto, Arllet Portugal, Victor Jun Ulat, Supat Thongjuea, Kyle Braak, Sebastian Ritter, Alexis Dereeper, Milko Skofic, Edwin Rojas, Natalia Martins, Georgios Pappas, Ryan Alamban, Roque Almodiel, Lord Hendrix Barboza, Jeffrey Detras, Kevin Manansala, Michael Jonathan Mendoza, Jeffrey Morales, Barry Peralta, Rowena Valerio, Yi Zhang, Sergio Gregorio, Joseph Hermocilla, Michael Echavez, Jan Michael Yap, Andrew Farmer, Gary Schiltz, Jennifer Lee, Terry Casstevens, Pankaj Jaiswal, Ayton Meintjes, Mark Wilkinson, Benjamin Good, James Wagner, Jane Morris, David Marshall, Anthony Collins, Shoshi Kikuchi, Thomas Metz, Graham McLaren, and Theo van Hintum PMCID: PMC2375972 Conserved Microsynteny of NPR1 with Genes Encoding a Signal Calmodulin-Binding Protein and a CK1-Class Protein Kinase in Beta vulgaris and Two Other Eudicots David Kuykendall, Jonathan Shao, and Tammy Murphy PMCID: PMC2579331 TreeGenes: A Forest Tree Genome Database Jill L. Wegrzyn, Jennifer M. Lee, Brandon R. Tearse, and David B. Neale PMCID: PMC2517852 An Empirical Bayesian Method for Detecting Differentially Expressed Genes Using EST Data Na You, Junmei Liu, and Chang Xuan Mao PMCID: PMC2277491 Bayesian Mixture Model Analysis for Detecting Differentially Expressed Genes Zhenyu Jia and Shizhong Xu PMCID: PMC2292802 Resource Reviews PPNEMA: A Resource of Plant-Parasitic Nematodes Multialigned Ribosomal Cistrons Francesco Rubino, Amalia Voukelatou, Francesca De Luca, Carla De Giorgi, and Marcella Attimonelli PMCID: PMC2552393 Cross-Chip Probe Matching Tool: A Web-Based Tool for Linking Microarray Probes within and across Plant Species Ruchi Ghanekar, Vinodh Srinivasasainagendra, and Grier P. Page PMCID: PMC2570748 MaizeGDB: The Maize Model Organism Database for Basic, Translational, and Applied Research Carolyn J. Lawrence, Lisa C. Harper, Mary L. Schaeffer, Taner Z. Sen, Trent E. Seigfried, and Darwin A. Campbell PMCID: PMC2518694 Review Articles Bioinformatic Tools for Inferring Functional Information from Plant Microarray Data: Tools for the First Steps Grier P. Page and Issa Coulibaly PMCID: PMC2408683 Genomic Resources and Tools for Gene Function Analysis in Potato Glenn J. Bryan and Ingo Hein PMCID: PMC2605302 Recent Advances in Medicago truncatula Genomics Jean-Michel Ané, Hongyan Zhu, and Julia Frugoli PMCID: PMC2216067 Statistical Methods for Mapping Multiple QTL Wei Zou and Zhao-Bang Zeng PMCID: PMC2423007 Development in Rice Genome Research Based on
Accurate Genome Sequence Takashi Matsumoto, Jianzhong Wu, Baltazar A. Antonio, and Takuji Sasaki PMCID: PMC2430989 Genomics of Sorghum Andrew H. Paterson PMCID: PMC2375965 Sugarcane Functional Genomics: Gene Discovery for Agronomic Trait Development M. Menossi, M. C. Silva-Filho, M. Vincentz, M.-A. Van-Sluys, and G. M. Souza PMCID: PMC2216073 Barley Genomics: An Overview Nese Sreenivasulu, Andreas Graner, and Ulrich Wobus PMCID: PMC2276607 Rice Molecular Breeding Laboratories in the Genomics Era: Current Status and Future Considerations Bert C. Y. Collard, Casiana M. Vera Cruz, Kenneth L. McNally, Parminder S. Virk, and David J. Mackill PMCID: PMC2408710 Citrus Genomics Manuel Talon and Fred G. Gmitter Jr. PMCID: PMC2396216
Brachypodium Genomics Bahar Sogutmaz Ozdemir, Pilar Hernandez, Ertugrul Filiz, and Hikmet Budak PMCID: PMC2246064 Application of Association Mapping to Understanding the Genetic Diversity of Plant Germplasm Resources Ibrokhim Y. Abdurakhmonov and Abdusattor Abdukarimov PMCID: PMC2423417 Progress in Understanding and Sequencing the Genome of Brassica rapa Chang Pyo Hong, Soo-Jin Kwon, Jung Sun Kim, Tae-Jin Yang, Beom-Seok Park, and Yong Pyo Lim PMCID: PMC2233773 Statistical Analysis of Efficient Unbalanced Factorial
Designs for Two-Color Microarray Experiments Robert J. Tempelman PMCID: PMC2431090 Phylogenetic Analyses: A Toolbox Expanding towards Bayesian Methods Stéphane Aris-Brosou and Xuhua Xia PMCID: PMC2375977 Recent Advances in Cotton Genomics Hong-Bin Zhang, Yaning Li, Baohua Wang, and Peng W. Chee PMCID: PMC2233810 Soybean Genomics: Developments through the Use of Cultivar “Forrest” David A. Lightfoot PMCID: PMC2376204 Structural and Functional Genomics of Tomato Amalia Barone, Maria Luisa Chiusano, Maria Raffaella Ercolano, Giovanni Giuliano, Silvana Grandillo, and Luigi Frusciante PMCID: PMC2246074 Bioinformatic Tools for Inferring Functional Information from Plant Microarray Data II: Analysis Beyond Single Gene Issa Coulibaly and Grier P. Page PMCID: PMC2443398 Wheat Genomics: Present Status and Future Prospects P. K. Gupta, R. R. Mir, A. Mohan, and J. Kumar PMCID: PMC2397558 |
