| | Other Issues: previous | next | latest | archiveMethodology Reports SSR Locator: Tool for Simple Sequence Repeat Discovery Integrated with Primer Design and PCR Simulation Luciano Carlos da Maia, Dario Abel Palmieri, Velci Queiroz de Souza, Mauricio Marini Kopp, Fernando Irajá Félix de Carvalho, and Antonio Costa de Oliveira Int J Plant Genomics. 2008; 2008: 412696. Published online 2008 July 27. doi: 10.1155/2008/412696.PMCID: PMC2486402 Blast2GO: A Comprehensive Suite for Functional Analysis in Plant Genomics Ana Conesa and Stefan Götz Int J Plant Genomics. 2008; 2008: 619832. Published online 2007 April 30. doi: 10.1155/2008/619832.PMCID: PMC2375974 Research Articles Bayesian Functional Data Clustering for Temporal Microarray Data Ping Ma, Wenxuan Zhong, Yang Feng, and Jun S. Liu Int J Plant Genomics. 2008; 2008: 231897. Published online 2008 April 17. doi: 10.1155/2008/231897.PMCID: PMC2358942
Coe1 in Beta vulgaris L. Has a Tnp2-Domain DNA Transposase Gene within Putative LTRs and Other Retroelement-Like Features David Kuykendall, Jonathan Shao, and Kenneth Trimmer Int J Plant Genomics. 2008; 2008: 360874. Published online 2008 June 11. doi: 10.1155/2008/360874.PMCID: PMC2426827 The Generation Challenge Programme Platform: Semantic Standards and Workbench for Crop Science Richard Bruskiewich, Martin Senger, Guy Davenport, Manuel Ruiz, Mathieu Rouard, Tom Hazekamp, Masaru Takeya, Koji Doi, Kouji Satoh, Marcos Costa, Reinhard Simon, Jayashree Balaji, Akinnola Akintunde, Ramil Mauleon, Samart Wanchana, Trushar Shah, Mylah Anacleto, Arllet Portugal, Victor Jun Ulat, Supat Thongjuea, Kyle Braak, Sebastian Ritter, Alexis Dereeper, Milko Skofic, Edwin Rojas, Natalia Martins, Georgios Pappas, Ryan Alamban, Roque Almodiel, Lord Hendrix Barboza, Jeffrey Detras, Kevin Manansala, Michael Jonathan Mendoza, Jeffrey Morales, Barry Peralta, Rowena Valerio, Yi Zhang, Sergio Gregorio, Joseph Hermocilla, Michael Echavez, Jan Michael Yap, Andrew Farmer, Gary Schiltz, Jennifer Lee, Terry Casstevens, Pankaj Jaiswal, Ayton Meintjes, Mark Wilkinson, Benjamin Good, James Wagner, Jane Morris, David Marshall, Anthony Collins, Shoshi Kikuchi, Thomas Metz, Graham McLaren, and Theo van Hintum Int J Plant Genomics. 2008; 2008: 369601. Published online 2008 April 30. doi: 10.1155/2008/369601.PMCID: PMC2375972 Conserved Microsynteny of NPR1 with Genes Encoding a Signal Calmodulin-Binding Protein and a CK1-Class Protein Kinase in Beta vulgaris and Two Other Eudicots David Kuykendall, Jonathan Shao, and Tammy Murphy Int J Plant Genomics. 2008; 2008: 391259. Published online 2008 October 30. doi: 10.1155/2008/391259.PMCID: PMC2579331 TreeGenes: A Forest Tree Genome Database Jill L. Wegrzyn, Jennifer M. Lee, Brandon R. Tearse, and David B. Neale Int J Plant Genomics. 2008; 2008: 412875. Published online 2008 August 18. doi: 10.1155/2008/412875.PMCID: PMC2517852 An Empirical Bayesian Method for Detecting Differentially Expressed Genes Using EST Data Na You, Junmei Liu, and Chang Xuan Mao Int J Plant Genomics. 2008; 2008: 817210. Published online 2008 March 13. doi: 10.1155/2008/817210.PMCID: PMC2277491 Bayesian Mixture Model Analysis for Detecting Differentially Expressed Genes Zhenyu Jia and Shizhong Xu Int J Plant Genomics. 2008; 2008: 892927. Published online 2008 March 25. doi: 10.1155/2008/892927.PMCID: PMC2292802 Resource Reviews PPNEMA: A Resource of Plant-Parasitic Nematodes Multialigned Ribosomal Cistrons Francesco Rubino, Amalia Voukelatou, Francesca De Luca, Carla De Giorgi, and Marcella Attimonelli Int J Plant Genomics. 2008; 2008: 387812. Published online 2008 September 23. doi: 10.1155/2008/387812.PMCID: PMC2552393 Cross-Chip Probe Matching Tool: A Web-Based Tool for Linking Microarray Probes within and across Plant Species Ruchi Ghanekar, Vinodh Srinivasasainagendra, and Grier P. Page Int J Plant Genomics. 2008; 2008: 451327. Published online 2008 October 21. doi: 10.1155/2008/451327.PMCID: PMC2570748 MaizeGDB: The Maize Model Organism Database for Basic, Translational, and Applied Research Carolyn J. Lawrence, Lisa C. Harper, Mary L. Schaeffer, Taner Z. Sen, Trent E. Seigfried, and Darwin A. Campbell Int J Plant Genomics. 2008; 2008: 496957. Published online 2008 August 20. doi: 10.1155/2008/496957.PMCID: PMC2518694 Review Articles Bioinformatic Tools for Inferring Functional Information from Plant Microarray Data: Tools for the First Steps Grier P. Page and Issa Coulibaly Int J Plant Genomics. 2008; 2008: 147563. Published online 2008 May 29. doi: 10.1155/2008/147563.PMCID: PMC2408683 Genomic Resources and Tools for Gene Function Analysis in Potato Glenn J. Bryan and Ingo Hein Int J Plant Genomics. 2008; 2008: 216513. Published online 2008 December 18. doi: 10.1155/2008/216513.PMCID: PMC2605302 Recent Advances in Medicago truncatula Genomics Jean-Michel Ané, Hongyan Zhu, and Julia Frugoli Int J Plant Genomics. 2008; 2008: 256597. Published online 2007 December 12. doi: 10.1155/2008/256597.PMCID: PMC2216067 Statistical Methods for Mapping Multiple QTL Wei Zou and Zhao-Bang Zeng Int J Plant Genomics. 2008; 2008: 286561. Published online 2008 June 8. doi: 10.1155/2008/286561.PMCID: PMC2423007 Development in Rice Genome Research Based on
Accurate Genome Sequence Takashi Matsumoto, Jianzhong Wu, Baltazar A. Antonio, and Takuji Sasaki Int J Plant Genomics. 2008; 2008: 348621. Published online 2008 June 18. doi: 10.1155/2008/348621.PMCID: PMC2430989 Genomics of Sorghum Andrew H. Paterson Int J Plant Genomics. 2008; 2008: 362451. Published online 2008 April 23. doi: 10.1155/2008/362451.PMCID: PMC2375965 Sugarcane Functional Genomics: Gene Discovery for Agronomic Trait Development M. Menossi, M. C. Silva-Filho, M. Vincentz, M.-A. Van-Sluys, and G. M. Souza Int J Plant Genomics. 2008; 2008: 458732. Published online 2007 December 16. doi: 10.1155/2008/458732.PMCID: PMC2216073 Barley Genomics: An Overview Nese Sreenivasulu, Andreas Graner, and Ulrich Wobus Int J Plant Genomics. 2008; 2008: 486258. Published online 2008 February 13. doi: 10.1155/2008/486258.PMCID: PMC2276607 Rice Molecular Breeding Laboratories in the Genomics Era: Current Status and Future Considerations Bert C. Y. Collard, Casiana M. Vera Cruz, Kenneth L. McNally, Parminder S. Virk, and David J. Mackill Int J Plant Genomics. 2008; 2008: 524847. Published online 2008 May 28. doi: 10.1155/2008/524847.PMCID: PMC2408710 Citrus Genomics Manuel Talon and Fred G. Gmitter Jr. Int J Plant Genomics. 2008; 2008: 528361. Published online 2008 May 19. doi: 10.1155/2008/528361.PMCID: PMC2396216
Brachypodium Genomics Bahar Sogutmaz Ozdemir, Pilar Hernandez, Ertugrul Filiz, and Hikmet Budak Int J Plant Genomics. 2008; 2008: 536104. Published online 2008 February 6. doi: 10.1155/2008/536104.PMCID: PMC2246064 Application of Association Mapping to Understanding the Genetic Diversity of Plant Germplasm Resources Ibrokhim Y. Abdurakhmonov and Abdusattor Abdukarimov Int J Plant Genomics. 2008; 2008: 574927. Published online 2008 June 8. doi: 10.1155/2008/574927.PMCID: PMC2423417 Progress in Understanding and Sequencing the Genome of Brassica rapa Chang Pyo Hong, Soo-Jin Kwon, Jung Sun Kim, Tae-Jin Yang, Beom-Seok Park, and Yong Pyo Lim Int J Plant Genomics. 2008; 2008: 582837. Published online 2008 January 24. doi: 10.1155/2008/582837.PMCID: PMC2233773 Statistical Analysis of Efficient Unbalanced Factorial
Designs for Two-Color Microarray Experiments Robert J. Tempelman Int J Plant Genomics. 2008; 2008: 584360. Published online 2008 June 18. doi: 10.1155/2008/584360.PMCID: PMC2431090 Phylogenetic Analyses: A Toolbox Expanding towards Bayesian Methods Stéphane Aris-Brosou and Xuhua Xia Int J Plant Genomics. 2008; 2008: 683509. Published online 2008 April 30. doi: 10.1155/2008/683509.PMCID: PMC2375977 Recent Advances in Cotton Genomics Hong-Bin Zhang, Yaning Li, Baohua Wang, and Peng W. Chee Int J Plant Genomics. 2008; 2008: 742304. Published online 2008 January 23. doi: 10.1155/2008/742304.PMCID: PMC2233810 Soybean Genomics: Developments through the Use of Cultivar “Forrest” David A. Lightfoot Int J Plant Genomics. 2008; 2008: 793158. Published online 2008 April 23. doi: 10.1155/2008/793158.PMCID: PMC2376204 Structural and Functional Genomics of Tomato Amalia Barone, Maria Luisa Chiusano, Maria Raffaella Ercolano, Giovanni Giuliano, Silvana Grandillo, and Luigi Frusciante Int J Plant Genomics. 2008; 2008: 820274. Published online 2008 January 31. doi: 10.1155/2008/820274.PMCID: PMC2246074 Bioinformatic Tools for Inferring Functional Information from Plant Microarray Data II: Analysis Beyond Single Gene Issa Coulibaly and Grier P. Page Int J Plant Genomics. 2008; 2008: 893941. Published online 2008 July 3. doi: 10.1155/2008/893941.PMCID: PMC2443398 Wheat Genomics: Present Status and Future Prospects P. K. Gupta, R. R. Mir, A. Mohan, and J. Kumar Int J Plant Genomics. 2008; 2008: 896451. Published online 2008 May 19. doi: 10.1155/2008/896451.PMCID: PMC2397558 |