BioData Min Volume 1; 2008

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Volume 1; 2008

Editorial

Filling the gap between biology and computer science

Jesús S Aguilar-Ruiz, Jason H Moore, and Marylyn D Ritchie

BioData Min. 2008; 1: 1. Published online 2008 July 17. doi: 10.1186/1756-0381-1-1.

PMCID: PMC2547862

| Abstract | Full Text | PDF–171K |

Methodology

Uncovering mechanisms of transcriptional regulations by systematic mining of cis regulatory elements with gene expression profiles

Qicheng Ma, Gung-Wei Chirn, Joseph D Szustakowski, Adel Bakhtiarova, Penelope A Kosinski, Daniel Kemp, and Nanguneri Nirmala

BioData Min. 2008; 1: 4. Published online 2008 July 17. doi: 10.1186/1756-0381-1-4.

PMCID: PMC2553773

| Abstract | Full Text | PDF–430K |

Research

Modeling gene-by-environment interaction in comorbid depression with alcohol use disorders via an integrated bioinformatics approach

Richard C McEachin, Benjamin J Keller, Erika FH Saunders, and Melvin G McInnis

BioData Min. 2008; 1: 2. Published online 2008 July 17. doi: 10.1186/1756-0381-1-2.

PMCID: PMC2547861

Search extension transforms Wiki into a relational system: A case for flavonoid metabolite database

Masanori Arita and Kazuhiro Suwa

BioData Min. 2008; 1: 7. Published online 2008 September 17. doi: 10.1186/1756-0381-1-7.

PMCID: PMC2556319

| Abstract | Full Text | PDF–272K |

Mining tissue specificity, gene connectivity and disease association to reveal a set of genes that modify the action of disease causing genes

Antonio Reverter, Aaron Ingham, and Brian P Dalrymple

BioData Min. 2008; 1: 8. Published online 2008 September 19. doi: 10.1186/1756-0381-1-8.

PMCID: PMC2556670

Fast approximate hierarchical clustering using similarity heuristics

Meelis Kull and Jaak Vilo

BioData Min. 2008; 1: 9. Published online 2008 September 22. doi: 10.1186/1756-0381-1-9.

PMCID: PMC2561018

Reviews

Neural networks for genetic epidemiology: past, present, and future

Alison A Motsinger-Reif and Marylyn D Ritchie

BioData Min. 2008; 1: 3. Published online 2008 July 17. doi: 10.1186/1756-0381-1-3.

PMCID: PMC2553772

| Abstract | Full Text | PDF–400K |

Clustering-based approaches to SAGE data mining

Haiying Wang, Huiru Zheng, and Francisco Azuaje

BioData Min. 2008; 1: 5. Published online 2008 July 17. doi: 10.1186/1756-0381-1-5.

PMCID: PMC2553774

| Abstract | Full Text | PDF–446K |

A review of estimation of distribution algorithms in bioinformatics

Rubén Armañanzas, Iñaki Inza, Roberto Santana, Yvan Saeys, Jose Luis Flores, Jose Antonio Lozano, Yves Van de Peer, Rosa Blanco, Víctor Robles, Concha Bielza, and Pedro Larrañaga

BioData Min. 2008; 1: 6. Published online 2008 September 11. doi: 10.1186/1756-0381-1-6.

PMCID: PMC2576251

| Abstract | Full Text | PDF–330K |

Software Article

Fast Gene Ontology based clustering for microarray experiments

Kristian Ovaska, Marko Laakso, and Sampsa Hautaniemi

BioData Min. 2008; 1: 11. Published online 2008 November 21. doi: 10.1186/1756-0381-1-11.

PMCID: PMC2613876

| Abstract | Full Text | PDF–238K |

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		Other Issues: previous \| next \| latest \| archive Volume 1; 2008 Editorial Filling the gap between biology and computer science Jesús S Aguilar-Ruiz, Jason H Moore, and Marylyn D Ritchie BioData Min. 2008; 1: 1. Published online 2008 July 17. doi: 10.1186/1756-0381-1-1. PMCID: PMC2547862 \| Abstract \| Full Text \| PDF–171K \| Methodology Uncovering mechanisms of transcriptional regulations by systematic mining of cis regulatory elements with gene expression profiles Qicheng Ma, Gung-Wei Chirn, Joseph D Szustakowski, Adel Bakhtiarova, Penelope A Kosinski, Daniel Kemp, and Nanguneri Nirmala BioData Min. 2008; 1: 4. Published online 2008 July 17. doi: 10.1186/1756-0381-1-4. PMCID: PMC2553773 \| Abstract \| Full Text \| PDF–430K \| Research Modeling gene-by-environment interaction in comorbid depression with alcohol use disorders via an integrated bioinformatics approach Richard C McEachin, Benjamin J Keller, Erika FH Saunders, and Melvin G McInnis BioData Min. 2008; 1: 2. Published online 2008 July 17. doi: 10.1186/1756-0381-1-2. PMCID: PMC2547861 \| Abstract \| Full Text \| PDF–463K \| Supplementary Material \| Search extension transforms Wiki into a relational system: A case for flavonoid metabolite database Masanori Arita and Kazuhiro Suwa BioData Min. 2008; 1: 7. Published online 2008 September 17. doi: 10.1186/1756-0381-1-7. PMCID: PMC2556319 \| Abstract \| Full Text \| PDF–272K \| Mining tissue specificity, gene connectivity and disease association to reveal a set of genes that modify the action of disease causing genes Antonio Reverter, Aaron Ingham, and Brian P Dalrymple BioData Min. 2008; 1: 8. Published online 2008 September 19. doi: 10.1186/1756-0381-1-8. PMCID: PMC2556670 \| Abstract \| Full Text \| PDF–736K \| Supplementary Material \| Fast approximate hierarchical clustering using similarity heuristics Meelis Kull and Jaak Vilo BioData Min. 2008; 1: 9. Published online 2008 September 22. doi: 10.1186/1756-0381-1-9. PMCID: PMC2561018 \| Abstract \| Full Text \| PDF–3.1M \| Supplementary Material \| Reviews Neural networks for genetic epidemiology: past, present, and future Alison A Motsinger-Reif and Marylyn D Ritchie BioData Min. 2008; 1: 3. Published online 2008 July 17. doi: 10.1186/1756-0381-1-3. PMCID: PMC2553772 \| Abstract \| Full Text \| PDF–400K \| Clustering-based approaches to SAGE data mining Haiying Wang, Huiru Zheng, and Francisco Azuaje BioData Min. 2008; 1: 5. Published online 2008 July 17. doi: 10.1186/1756-0381-1-5. PMCID: PMC2553774 \| Abstract \| Full Text \| PDF–446K \| A review of estimation of distribution algorithms in bioinformatics Rubén Armañanzas, Iñaki Inza, Roberto Santana, Yvan Saeys, Jose Luis Flores, Jose Antonio Lozano, Yves Van de Peer, Rosa Blanco, Víctor Robles, Concha Bielza, and Pedro Larrañaga BioData Min. 2008; 1: 6. Published online 2008 September 11. doi: 10.1186/1756-0381-1-6. PMCID: PMC2576251 \| Abstract \| Full Text \| PDF–330K \| Software Article Fast Gene Ontology based clustering for microarray experiments Kristian Ovaska, Marko Laakso, and Sampsa Hautaniemi BioData Min. 2008; 1: 11. Published online 2008 November 21. doi: 10.1186/1756-0381-1-11. PMCID: PMC2613876 \| Abstract \| Full Text \| PDF–238K \|
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