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Volume 3(1);  January 2005
Synopses
Gene Signatures Predict Interferon Response for MS Patients
PLoS Biol. 2005 January; 3(1): e18. Published online 2004 December 28. doi: 10.1371/journal.pbio.0030018.
PMCID: PMC539062
Unexpressed but Indispensable—The DNA Sequences That Control Development
PLoS Biol. 2005 January; 3(1): e19. Published online 2004 December 2. doi: 10.1371/journal.pbio.0030019.
PMCID: PMC544543
Ancient DNA Tells Story of Giant Eagle Evolution
PLoS Biol. 2005 January; 3(1): e20. Published online 2005 January 4. doi: 10.1371/journal.pbio.0030020.
PMCID: PMC539337
Tracking Orangutans from the Sky
PLoS Biol. 2005 January; 3(1): e22. Published online 2004 December 7. doi: 10.1371/journal.pbio.0030022.
PMCID: PMC534815
Genome Sequencing: Using Models to Predict Who's Next
PLoS Biol. 2005 January; 3(1): e25. Published online 2005 January 4. doi: 10.1371/journal.pbio.0030025.
PMCID: PMC539338
Computation Provides a Virtual Recording of Auditory Signaling
PLoS Biol. 2005 January; 3(1): e26. Published online 2005 January 4. doi: 10.1371/journal.pbio.0030026.
PMCID: PMC539339
Evolution of Sex Chromosomes: The Case of the White Campion
PLoS Biol. 2005 January; 3(1): e28. Published online 2004 December 21. doi: 10.1371/journal.pbio.0030028.
PMCID: PMC536008
Structure of a Conserved RNA Element in the SARS Virus Genome Determined
PLoS Biol. 2005 January; 3(1): e29. Published online 2004 December 28. doi: 10.1371/journal.pbio.0030029.
PMCID: PMC539063
The Evolution of Self-Fertile Hermaphroditism: The Fog Is Clearing
PLoS Biol. 2005 January; 3(1): e30. Published online 2004 December 28. doi: 10.1371/journal.pbio.0030030.
PMCID: PMC539064
Hirsute or Hairless? Two Proteins May Spell the Difference
PLoS Biol. 2005 January; 3(1): e35. Published online 2004 December 28. doi: 10.1371/journal.pbio.0030035.
PMCID: PMC539066
Whisker Velocity Patterns Tell Rats What They're Feeling
PLoS Biol. 2005 January; 3(1): e36. Published online 2005 January 11. doi: 10.1371/journal.pbio.0030036.
PMCID: PMC544549
Separating Wheat from Chaff in Plant Genomes
PLoS Biol. 2005 January; 3(1): e39. Published online 2005 January 4. doi: 10.1371/journal.pbio.0030039.
PMCID: PMC539340
Multiple Campylobacter Genomes Sequenced
PLoS Biol. 2005 January; 3(1): e40. Published online 2005 January 4. doi: 10.1371/journal.pbio.0030040.
PMCID: PMC539341
Dispersal or Drift? More to Plant Biodiversity Than Meets the Eye
PLoS Biol. 2005 January; 3(1): e43. Published online 2005 January 4. doi: 10.1371/journal.pbio.0030043.
PMCID: PMC539342
Features
A Golden Age of Brain Exploration
Virginia Gewin
PLoS Biol. 2005 January; 3(1): e24. Published online 2005 January 18. doi: 10.1371/journal.pbio.0030024.
PMCID: PMC544547
Help Wanted: Science Manager
Kirsten A Hubbard
PLoS Biol. 2005 January; 3(1): e32. Published online 2005 January 18. doi: 10.1371/journal.pbio.0030032.
PMCID: PMC544548
Book Review/Science in the Media
Turning to Science
Hemai Parthasarathy
PLoS Biol. 2005 January; 3(1): e23. Published online 2005 January 18. doi: 10.1371/journal.pbio.0030023.
PMCID: PMC544546
Primer
Sex Determination across Evolution: Connecting the Dots
Eric S Haag and Alana V Doty
PLoS Biol. 2005 January; 3(1): e21. Published online 2005 January 18. doi: 10.1371/journal.pbio.0030021.
PMCID: PMC544544
Community Page
Biology by Numbers—Introducing Quantitation into Life Science Education
Tinri Aegerter-Wilmsen and Ton Bisseling
PLoS Biol. 2005 January; 3(1): e1. Published online 2005 January 18. doi: 10.1371/journal.pbio.0030001.
PMCID: PMC544540
Accessing the Microscopic World
Charles Carlson
PLoS Biol. 2005 January; 3(1): e12. Published online 2005 January 18. doi: 10.1371/journal.pbio.0030012.
PMCID: PMC544541
Research Articles
Transcription-Based Prediction of Response to IFNβ Using Supervised Computational Methods
Sergio E Baranzini, Parvin Mousavi, Jordi Rio, Stacy J Caillier, Althea Stillman, Pablo Villoslada, Matthew M Wyatt, Manuel Comabella, Larry D Greller, Roland Somogyi, Xavier Montalban, and Jorge R Oksenberg
PLoS Biol. 2005 January; 3(1): e2. Published online 2004 December 28. doi: 10.1371/journal.pbio.0030002.
PMCID: PMC539058
Aerial Surveys Give New Estimates for Orangutans in Sabah, Malaysia
Marc Ancrenaz, Olivier Gimenez, Laurentius Ambu, Karine Ancrenaz, Patrick Andau, Benoît Goossens, John Payne, Azri Sawang, Augustine Tuuga, and Isabelle Lackman-Ancrenaz
PLoS Biol. 2005 January; 3(1): e3. Published online 2004 December 7. doi: 10.1371/journal.pbio.0030003.
PMCID: PMC534813
A Gradual Process of Recombination Restriction in the Evolutionary History of the Sex Chromosomes in Dioecious Plants
Michael Nicolas, Gabriel Marais, Vladka Hykelova, Bohuslav Janousek, Valérie Laporte, Boris Vyskot, Dominique Mouchiroud, Ioan Negrutiu, Deborah Charlesworth, and Françoise Monéger
PLoS Biol. 2005 January; 3(1): e4. Published online 2004 December 21. doi: 10.1371/journal.pbio.0030004.
PMCID: PMC536007
The Structure of a Rigorously Conserved RNA Element within the SARS Virus Genome
Michael P Robertson, Haller Igel, Robert Baertsch, David Haussler, Manuel Ares, Jr, and William G Scott
PLoS Biol. 2005 January; 3(1): e5. Published online 2004 December 28. doi: 10.1371/journal.pbio.0030005.
PMCID: PMC539059
fog-2 and the Evolution of Self-Fertile Hermaphroditism in Caenorhabditis
Sudhir Nayak, Johnathan Goree, and Tim Schedl
PLoS Biol. 2005 January; 3(1): e6. Published online 2004 December 28. doi: 10.1371/journal.pbio.0030006.
PMCID: PMC539060
Highly Conserved Non-Coding Sequences Are Associated with Vertebrate Development
Adam Woolfe, Martin Goodson, Debbie K Goode, Phil Snell, Gayle K McEwen, Tanya Vavouri, Sarah F Smith, Phil North, Heather Callaway, Krys Kelly, Klaudia Walter, Irina Abnizova, Walter Gilks, Yvonne J. K Edwards, Julie E Cooke, and Greg Elgar
PLoS Biol. 2005 January; 3(1): e7. Published online 2004 November 11. doi: 10.1371/journal.pbio.0030007.
PMCID: PMC526512
Disentangling Sub-Millisecond Processes within an Auditory Transduction Chain
Tim Gollisch and Andreas M. V Herz
PLoS Biol. 2005 January; 3(1): e8. Published online 2005 January 4. doi: 10.1371/journal.pbio.0030008.
PMCID: PMC539322
Ancient DNA Provides New Insights into the Evolutionary History of New Zealand's Extinct Giant Eagle
Michael Bunce, Marta Szulkin, Heather R. L Lerner, Ian Barnes, Beth Shapiro, Alan Cooper, and Richard N Holdaway
PLoS Biol. 2005 January; 3(1): e9. Published online 2005 January 4. doi: 10.1371/journal.pbio.0030009.
PMCID: PMC539324
A Model of the Statistical Power of Comparative Genome Sequence Analysis
Sean R Eddy
PLoS Biol. 2005 January; 3(1): e10. Published online 2005 January 4. doi: 10.1371/journal.pbio.0030010.
PMCID: PMC539325
A Signaling Pathway Involving TGF-β2 and Snail in Hair Follicle Morphogenesis
Colin Jamora, Pedro Lee, Pawel Kocieniewski, Mohamad Azhar, Ryoichi Hosokawa, Yang Chai, and Elaine Fuchs
PLoS Biol. 2005 January; 3(1): e11. Published online 2004 December 28. doi: 10.1371/journal.pbio.0030011.
PMCID: PMC539061
Sorghum Genome Sequencing by Methylation Filtration
Joseph A Bedell, Muhammad A Budiman, Andrew Nunberg, Robert W Citek, Dan Robbins, Joshua Jones, Elizabeth Flick, Theresa Rohlfing, Jason Fries, Kourtney Bradford, Jennifer McMenamy, Michael Smith, Heather Holeman, Bruce A Roe, Graham Wiley, Ian F Korf, Pablo D Rabinowicz, Nathan Lakey, W. Richard McCombie, Jeffrey A Jeddeloh, and Robert A Martienssen
PLoS Biol. 2005 January; 3(1): e13. Published online 2005 January 4. doi: 10.1371/journal.pbio.0030013.
PMCID: PMC539327
Relaxed Molecular Clock Provides Evidence for Long-Distance Dispersal of Nothofagus (Southern Beech)
Michael Knapp, Karen Stöckler, David Havell, Frédéric Delsuc, Federico Sebastiani, and Peter J Lockhart
PLoS Biol. 2005 January; 3(1): e14. Published online 2005 January 4. doi: 10.1371/journal.pbio.0030014.
PMCID: PMC539330
Major Structural Differences and Novel Potential Virulence Mechanisms from the Genomes of Multiple Campylobacter Species
Derrick E Fouts, Emmanuel F Mongodin, Robert E Mandrell, William G Miller, David A Rasko, Jacques Ravel, Lauren M Brinkac, Robert T DeBoy, Craig T Parker, Sean C Daugherty, Robert J Dodson, A. Scott Durkin, Ramana Madupu, Steven A Sullivan, Jyoti U Shetty, Mobolanle A Ayodeji, Alla Shvartsbeyn, Michael C Schatz, Jonathan H Badger, Claire M Fraser, and Karen E Nelson
PLoS Biol. 2005 January; 3(1): e15. Published online 2005 January 4. doi: 10.1371/journal.pbio.0030015.
PMCID: PMC539331
Neuronal Encoding of Texture in the Whisker Sensory Pathway
Ehsan Arabzadeh, Erik Zorzin, and Mathew E Diamond
PLoS Biol. 2005 January; 3(1): e17. Published online 2005 January 11. doi: 10.1371/journal.pbio.0030017.
PMCID: PMC544542
Correction
Correction: Regulation of Muscle Fiber Type and Running Endurance by PPARδ
PLoS Biol. 2005 January; 3(1): e61. Published online 2005 January 18. doi: 10.1371/journal.pbio.0030061.
PMCID: PMC544550
Corrects: Yong-Xu Wang, et al. Regulation of Muscle Fiber Type and Running Endurance by PPARδ. PLoS Biol. 2004 October; 2(10): e294.
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