| | This journal provides immediate access to some articles. In This Issue Proc Natl Acad Sci U S A. 2005 October 25; 102(43): 15275–15276. doi: 10.1073/iti4305102.PMCID: PMC1266159 Introduction Spatial Demography Special Feature: Spatial demography Kenneth W. Wachter PMCID: PMC1266156 Commentaries Ramanujan's congruences and Dyson's crank George E. Andrews and Ken Ono PMCID: PMC1266147 Application of a priori established gene sets to discover biologically important differential expression in microarray data Andrea Bild and Phillip George Febbo PMCID: PMC1266131 Perspective The discovery of ubiquitin-dependent proteolysis Keith D. Wilkinson PMCID: PMC1266097 Perspectives Perspectives on the geographic stability and mobility of people in cities Susan Hanson PMCID: PMC1266122 Profile Profile of John F. Dewey Regina Nuzzo PMCID: PMC1266112 Physical Sciences Applied Physical Sciences Biological imaging by soft x-ray diffraction microscopy David Shapiro, Pierre Thibault, Tobias Beetz, Veit Elser, Malcolm Howells, Chris Jacobsen, Janos Kirz, Enju Lima, Huijie Miao, Aaron M. Neiman, and David Sayre PMCID: PMC1250270 Chemistry Conformational dependence of a protein kinase phosphate transfer reaction Graeme Henkelman, Montiago X. LaBute, Chang-Shung Tung, P. W. Fenimore, and Benjamin H. McMahon PMCID: PMC1255735 Geology INAUGURAL ARTICLE by a Recently Elected Academy Member: Orogeny can be very short John F. Dewey PMCID: PMC1266104 Sustainability of irrigated agriculture in the San Joaquin Valley, California Gerrit Schoups, Jan W. Hopmans, Chuck A. Young, Jasper A. Vrugt, Wesley W. Wallender, Ken K. Tanji, and Sorab Panday PMCID: PMC1257392 Geology Mechanisms of classical crystal growth theory explain quartz and silicate dissolution behavior Patricia M. Dove, Nizhou Han, and James J. De Yoreo PMCID: PMC1266142 Geophysics A simulation-based approach to forecasting the next great San Francisco earthquake J. B. Rundle, P. B. Rundle, A. Donnellan, D. L. Turcotte, R. Shcherbakov, P. Li, B. D. Malamud, L. B. Grant, G. C. Fox, D. McLeod, G. Yakovlev, J. Parker, W. Klein, and K. F. Tiampo PMCID: PMC1266132 Mathematics Potential theory for shock reflection by a large-angle wedge Gui-Qiang Chen and Mikhail Feldman PMCID: PMC1266106 From the Cover:
Partition congruences and the Andrews-Garvan-Dyson crank Karl Mahlburg PMCID: PMC1266116 Essential equilibria Srihari Govindan and Robert Wilson PMCID: PMC1266119 Physics Asymptotically scale-invariant occupancy of phase space makes the entropy Sq extensive Constantino Tsallis, Murray Gell-Mann, and Yuzuru Sato PMCID: PMC1266086 Biological Sciences Agricultural Sciences From the Cover:
A maize resistance gene functions against bacterial streak disease in rice Bingyu Zhao, Xinghua Lin, Jesse Poland, Harold Trick, Jan Leach, and Scot Hulbert PMCID: PMC1266081 Delayed resistance to transgenic cotton in pink bollworm Bruce E. Tabashnik, Timothy J. Dennehy, and Yves Carrière PMCID: PMC1255739 Biochemistry From nonpeptide toward noncarbon protease inhibitors: Metallacarboranes as specific and potent inhibitors of HIV protease Petr Cígler, Milan Kožíšek, Pavlína Řezáčová, Jíří Brynda, Zbyszek Otwinowski, Jana Pokorná, Jaromír Plešek, Bohumír Grüner, Lucie Dolečková-Marešová, Martin Máša, Juraj Sedláček, Jochen Bodem, Hans-Georg Kräusslich, Vladimír Král, and Jan Konvalinka PMCID: PMC1255736 Polyglutamine aggregation nucleation: Thermodynamics of a highly unfavorable protein folding reaction Anusri M. Bhattacharyya, Ashwani K. Thakur, and Ronald Wetzel PMCID: PMC1266079 Reconfiguring the connectivity of a multiprotein complex: Fusions of yeast TATA-binding protein with Brf1, and the function of transcription factor IIIB George A. Kassavetis, Elisabetta Soragni, Robert Driscoll, and E. Peter Geiduschek PMCID: PMC1266137 Single-stranded DNA mimicry in the p53 transactivation domain interaction with replication protein A Elena Bochkareva, Lilia Kaustov, Ayeda Ayed, Gwan-Su Yi, Ying Lu, Antonio Pineda-Lucena, Jack C. C. Liao, Andrei L. Okorokov, Jo Milner, Cheryl H. Arrowsmith, and Alexey Bochkarev PMCID: PMC1266094 Coevolution of tRNA intron motifs and tRNA endonuclease architecture in Archaea Giuseppe D. Tocchini-Valentini, Paolo Fruscoloni, and Glauco P. Tocchini-Valentini PMCID: PMC1266117 An expanding family of archaeal transcriptional activators Mohamed Ouhammouch and E. Peter Geiduschek PMCID: PMC1266154 Structure and metal-dependent mechanism of peptidoglycan deacetylase, a streptococcal virulence factor David E. Blair, Alexander W. Schüttelkopf, James I. MacRae, and Daan M. F. van Aalten PMCID: PMC1252587 Effect of protein structure on mitochondrial import Alexander J. Wilcox, Jason Choy, Carlos Bustamante, and Andreas Matouschek PMCID: PMC1266127 Biophysics Structure of the KvAP voltage-dependent K+ channel and its dependence on the lipid membrane Seok-Yong Lee, Alice Lee, Jiayun Chen, and Roderick MacKinnon PMCID: PMC1253646 Conservation and relative importance of residues across protein-protein interfaces Mainak Guharoy and Pinak Chakrabarti PMCID: PMC1266102 Visualization of retrovirus budding with correlated light and electron microscopy Daniel R. Larson, Marc C. Johnson, Watt W. Webb, and Volker M. Vogt PMCID: PMC1266096 The copper-iron connection in biology: Structure of the metallo-oxidase Fet3p Alexander B. Taylor, Christopher S. Stoj, Lynn Ziegler, Daniel J. Kosman, and P. John Hart PMCID: PMC1257390 Effects of interface mutations on association modes and electron-transfer rates between proteins Seong A. Kang and Brian R. Crane PMCID: PMC1266099 Single-molecule Förster resonance energy transfer study of protein dynamics under denaturing conditions Elza V. Kuzmenkina, Colin D. Heyes, and G. Ulrich Nienhaus PMCID: PMC1266141 Structure and properties of α-synuclein and other amyloids determined at the amino acid level Charyl Del Mar, Eric A. Greenbaum, Leland Mayne, S. Walter Englander, and Virgil L. Woods, Jr. PMCID: PMC1266128 Hairpin folding rates reflect mutations within and remote from the turn region Katherine A. Olsen, R. Matthew Fesinmeyer, James M. Stewart, and Niels H. Andersen PMCID: PMC1266093 Cell Biology Friend spleen focus-forming virus transforms rodent fibroblasts in cooperation with a short form of the receptor tyrosine kinase Stk Kazuo Nishigaki, Charlotte Hanson, Tanya Jelacic, Delores Thompson, and Sandra Ruscetti PMCID: PMC1266114 Functions and dysfunctions of the nuclear lamin Ig-fold domain in nuclear assembly, growth, and Emery–Dreifuss muscular dystrophy Dale K. Shumaker, Reynold I. Lopez-Soler, Stephen A. Adam, Harald Herrmann, Robert D. Moir, Timothy P. Spann, and Robert D. Goldman PMCID: PMC1255737 H-ras, K-ras, and inner plasma membrane raft proteins operate in nanoclusters with differential dependence on the actin cytoskeleton Sarah J. Plowman, Cornelia Muncke, Robert G. Parton, and John F. Hancock PMCID: PMC1266090 Developmental Biology Synergistic action of E74B and ecdysteroid receptor in activating a 20-hydroxyecdysone effector gene GuoQiang Sun, Jinsong Zhu, Li Chen, and Alexander S. Raikhel PMCID: PMC1266084 Evolution Evolutionary conservation and diversification of Rh family genes and proteins Cheng-Han Huang and Jianbin Peng PMCID: PMC1266151 Molecular signatures for sex in the Placozoa Ana Y. Signorovitch, Stephen L. Dellaporta, and Leo W. Buss PMCID: PMC1266089 Plasmodium vivax: Recent world expansion and genetic identity to Plasmodium simium Chae Seung Lim, Loubna Tazi, and Francisco J. Ayala PMCID: PMC1266129 Increase in toxicity of an invasive weed after reassociation with its coevolved herbivore Arthur R. Zangerl and May R. Berenbaum PMCID: PMC1266144 Genetics Comparative gene expression analysis of blood and brain provides concurrent validation of SELENBP1 up-regulation in schizophrenia Stephen J. Glatt, Ian P. Everall, William S. Kremen, Jacques Corbeil, Roman Šášik, Negar Khanlou, Mark Han, Choong-Chin Liew, and Ming T. Tsuang PMCID: PMC1266138 DNA damage-induced phosphorylation of the human telomere-associated protein TRF2 Hiromi Tanaka, Marc S. Mendonca, Paul S. Bradshaw, Derek J. Hoelz, Linda H. Malkas, M. Stephen Meyn, and David Gilley PMCID: PMC1266153 From the Cover:
Gene set enrichment analysis: A knowledge-based approach for interpreting genome-wide expression profiles Aravind Subramanian, Pablo Tamayo, Vamsi K. Mootha, Sayan Mukherjee, Benjamin L. Ebert, Michael A. Gillette, Amanda Paulovich, Scott L. Pomeroy, Todd R. Golub, Eric S. Lander, and Jill P. Mesirov PMCID: PMC1239896 The wound repair response controls outcome to cutaneous leishmaniasis Anuratha Sakthianandeswaren, Colleen M. Elso, Ken Simpson, Joan M. Curtis, Beena Kumar, Terence P. Speed, Emanuela Handman, and Simon J. Foote PMCID: PMC1266107 Human microRNAs target a functionally distinct population of genes with AT-rich 3′ UTRs Harlan Robins and William H. Press PMCID: PMC1257391 Immunology Human decidual NK cells form immature activating synapses and are not cytotoxic Hernan D. Kopcow, David S. J. Allan, Xi Chen, Basya Rybalov, Milena M. Andzelm, Baoxue Ge, and Jack L. Strominger PMCID: PMC1266146 Different cell surface oligomeric states of B7-1 and B7-2: Implications for signaling Sumeena Bhatia, Michael Edidin, Steven C. Almo, and Stanley G. Nathenson PMCID: PMC1266120 Medical Sciences Divergent effects of matrix metalloproteinases 3, 7, 9, and 12 on atherosclerotic plaque stability in mouse brachiocephalic arteries Jason L. Johnson, Sarah J. George, Andrew C. Newby, and Christopher L. Jackson PMCID: PMC1266110 Complete and persistent phenotypic correction of phenylketonuria in mice by site-specific genome integration of murine phenylalanine hydroxylase cDNA Li Chen and Savio L. C. Woo PMCID: PMC1266087 Tumor promotion by caspase-resistant retinoblastoma protein Helena L. Borges, Jeff Bird, Katherine Wasson, Robert D. Cardiff, Nissi Varki, Lars Eckmann, and Jean Y. J. Wang PMCID: PMC1255734 Insulin-like growth factors 1 and 2 induce lymphangiogenesis in vivo Meit Björndahl, Renhai Cao, L. Johan Nissen, Steve Clasper, Louise A. Johnson, Yuan Xue, Zhongjun Zhou, David Jackson, Anker Jon Hansen, and Yihai Cao PMCID: PMC1266150 Creating oral squamous cancer cells: A cellular model of oral–esophageal carcinogenesis Gitta Goessel, Michael Quante, William C. Hahn, Hideki Harada, Steffen Heeg, Yasir Suliman, Michaela Doebele, Alexander von Werder, Christine Fulda, Hiroshi Nakagawa, Anil K. Rustgi, Hubert E. Blum, and Oliver G. Opitz PMCID: PMC1266078 NMDA antagonist inhibits the extracellular signal-regulated kinase pathway and suppresses cancer growth Andrzej Stepulak, Marco Sifringer, Wojciech Rzeski, Stefanie Endesfelder, Alexander Gratopp, Elena E. Pohl, Petra Bittigau, Ursula Felderhoff-Mueser, Angela M. Kaindl, Christoph Bührer, Henrik H. Hansen, Marta Stryjecka-Zimmer, Lechoslaw Turski, and Chrysanthy Ikonomidou PMCID: PMC1266139 WWOX gene restoration prevents lung cancer growth in vitro and in vivo Muller Fabbri, Dimitrios Iliopoulos, Francesco Trapasso, Rami I. Aqeilan, Amelia Cimmino, Nicola Zanesi, Sai Yendamuri, Shuang-Yin Han, Dino Amadori, Kay Huebner, and Carlo M. Croce PMCID: PMC1266103 Microbiology A paracrine peptide sex pheromone also acts as an autocrine signal to induce plasmid transfer and virulence factor expression in vivo Josephine R. Chandler, Helmut Hirt, and Gary M. Dunny PMCID: PMC1266105 Insights into the organization and dynamics of bacterial chemoreceptor clusters through in vivo crosslinking studies Claudia A. Studdert and John S. Parkinson PMCID: PMC1266109 Changes in energy metabolism of Mycobacterium tuberculosis in mouse lung and under in vitro conditions affecting aerobic respiration Lanbo Shi, Charles D. Sohaskey, Bavesh D. Kana, Stephanie Dawes, Robert J. North, Valerie Mizrahi, and Maria L. Gennaro PMCID: PMC1255738 A conserved motif in transmembrane helix 1 of diphtheria toxin mediates catalytic domain delivery to the cytosol Ryan Ratts, Carolina Trujillo, Ajit Bharti, Johanna vanderSpek, Robert Harrison, and John R. Murphy PMCID: PMC1257389 Group A Streptococcus produce pilus-like structures containing protective antigens and Lancefield T antigens Marirosa Mora, Giuliano Bensi, Sabrina Capo, Fabiana Falugi, Chiara Zingaretti, Andrea G. O. Manetti, Tiziana Maggi, Anna Rita Taddei, Guido Grandi, and John L. Telford PMCID: PMC1253647 Neuroscience Thinning of the cerebral cortex visualized in HIV/AIDS reflects CD4+ T lymphocyte decline Paul M. Thompson, Rebecca A. Dutton, Kiralee M. Hayashi, Arthur W. Toga, Oscar L. Lopez, Howard J. Aizenstein, and James T. Becker PMCID: PMC1266080 Altered cortical glutamatergic and GABAergic signal transmission with glial involvement in depression P. V. Choudary, M. Molnar, S. J. Evans, H. Tomita, J.Z. Li, M. P. Vawter, R. M. Myers, W. E. Bunney, Jr., H. Akil, S. J. Watson, and E. G. Jones PMCID: PMC1257393 Reprogramming of tau alternative splicing by spliceosome-mediated RNA trans-splicing: Implications for tauopathies Teresa Rodriguez-Martin, Mariano A. Garcia-Blanco, S. Gary Mansfield, Andrew C. Grover, Michael Hutton, Qingming Yu, Jianhua Zhou, Brian H. Anderton, and Jean-Marc Gallo PMCID: PMC1266082 Auditory orientation in crickets: Pattern recognition controls reactive steering James F. A. Poulet and Berthold Hedwig PMCID: PMC1266100 Early age-related cognitive impairment in mice lacking cannabinoid CB1 receptors A. Bilkei-Gorzo, I. Racz, O. Valverde, M. Otto, K. Michel, M. Sarstre, and A. Zimmer PMCID: PMC1266095 A functional genetic variation of adenosine deaminase affects the duration and intensity of deep sleep in humans J. V. Rétey, M. Adam, E. Honegger, R. Khatami, U. F. O. Luhmann, H. H. Jung, W. Berger, and H.-P. Landolt PMCID: PMC1266101 Diurnal and estradiol-dependent changes in gonadotropin-releasing hormone neuron firing activity Catherine A. Christian, Jessica L. Mobley, and Suzanne M. Moenter PMCID: PMC1257388 Pharmacology CK2 phosphorylation of eukaryotic translation initiation factor 5 potentiates cell cycle progression Miwako Kato Homma, Ikuo Wada, Toshiyuki Suzuki, Junko Yamaki, Edwin G. Krebs, and Yoshimi Homma PMCID: PMC1266118 Plant Biology D-type cyclins activate division in the root apex to promote seed germination in Arabidopsis Nompumelelo H. Masubelele, Walter Dewitte, Margit Menges, Spencer Maughan, Carl Collins, Rachael Huntley, Jeroen Nieuwland, Simon Scofield, and James A. H. Murray PMCID: PMC1266134 Psychology Rostral and dorsal anterior cingulate cortex make dissociable contributions during antisaccade error commission Frida E. Polli, Jason J. S. Barton, Matthew S. Cain, Katharine N. Thakkar, Scott L. Rauch, and Dara S. Manoach PMCID: PMC1255733 Social Sciences Anthropology INAUGURAL ARTICLE by a Recently Elected Academy Member: The evolution of lethal intergroup violence Raymond C. Kelly PMCID: PMC1266108 Economic Sciences Essential equilibria Srihari Govindan and Robert Wilson PMCID: PMC1266119 Social Sciences From the Cover:
Intervening in the residential mobility process: Neighborhood outcomes for low-income populations William A. V. Clark PMCID: PMC1266121 Migration up and down the urban hierarchy and across the life course D. A. Plane, C. J. Henrie, and M. J. Perry PMCID: PMC1266124 Population distribution and redistribution of the baby-boom cohort in the United States: Recent trends and implications Peter A. Rogerson and Daejong Kim PMCID: PMC1266126 Social Sciences Assimilation and differences between the settlement patterns of individual immigrants and immigrant households Mark Ellis and Richard Wright PMCID: PMC1266123 The changing demographic, legal, and technological contexts of political representation Benjamin Forest PMCID: PMC1266125 Confidentiality and spatially explicit data: Concerns and challenges Leah K. VanWey, Ronald R. Rindfuss, Myron P. Gutmann, Barbara Entwisle, and Deborah L. Balk PMCID: PMC1266143 Corrections Proc Natl Acad Sci U S A. 2005 October 25; 102(43): 15712. doi: 10.1073/pnas.0508068102.PMCID: PMC1266155 Corrects: Tobias Allander, et al. From the Cover:
Cloning of a human parvovirus by molecular screening of respiratory tract samples. Proc Natl Acad Sci U S A. 2005 September 6; 102(36): 12891–12896. Proc Natl Acad Sci U S A. 2005 October 25; 102(43): 15712. doi: 10.1073/pnas.0508403102.PMCID: PMC1266157 Corrects: Moritoshi Sato, et al. Imaging the nanomolar range of nitric oxide with an amplifier-coupled fluorescent indicator in living cells. Proc Natl Acad Sci U S A. 2005 October 11; 102(41): 14515–14520. Proc Natl Acad Sci U S A. 2005 October 25; 102(43): 15712. doi: 10.1073/pnas.0508442102.PMCID: PMC1266158 Corrects: Atsuko Uenoyama, et al. From the Cover:
Gliding ghosts of Mycoplasma mobile. Proc Natl Acad Sci U S A. 2005 September 6; 102(36): 12754–12758. |
