| | Research Articles Elevated Stress-Hemoconcentration in Major Depression Is Normalized
by Antidepressant Treatment: Secondary Analysis from a Randomized, Double-Blind
Clinical Trial and Relevance to Cardiovascular Disease Risk Ma-Li Wong, Chuanhui Dong, Karin Esposito, Sarika Thakur, Weiqing Liu, Robert M. Elashoff, and Julio Licinio PMCID: PMC2391294 Targeted Disruption of the PME-1 Gene Causes Loss of Demethylated PP2A and Perinatal Lethality in Mice Silvia Ortega-Gutiérrez, Donmienne Leung, Scott Ficarro, Eric C. Peters, and Benjamin F. Cravatt PMCID: PMC2438471 Relationship between Quality and Editorial Leadership of Biomedical Research Journals: A Comparative Study of Italian and UK Journals Valerie Matarese PMCID: PMC2438474 Genotyping of Bacillus cereus Strains by Microarray-Based Resequencing Michael E. Zwick, Maureen P. Kiley, Andrew C. Stewart, Alfred Mateczun, and Timothy D. Read PMCID: PMC2438477 Contextual Specificity in Peptide-Mediated Protein Interactions Amelie Stein and Patrick Aloy PMCID: PMC2438476 Marking Embryonic Stem Cells with a 2A Self-Cleaving Peptide: A NKX2-5 Emerald GFP BAC Reporter Edward C. Hsiao, Yuko Yoshinaga, Trieu D. Nguyen, Stacy L. Musone, Judy E. Kim, Paul Swinton, Isidro Espineda, Carlota Manalac, Pieter J. deJong, and Bruce R. Conklin PMCID: PMC2430532 A Fluctuation-Driven Mechanism for Slow Decision Processes in Reverberant Networks Daniel Martí, Gustavo Deco, Maurizio Mattia, Guido Gigante, and Paolo Del Giudice PMCID: PMC2432027 An Evaluation of Commercial Fluorescent Bead-Based Luminex Cytokine Assays Joel Fleury Djoba Siawaya, Teri Roberts, Chantal Babb, Gillian Black, Hawa Jande Golakai, Kim Stanley, Nchinya Bennedict Bapela, Eileen Hoal, Shreemanta Parida, Paul van Helden, and Gerhard Walzl PMCID: PMC2432042 Phytotoxic Effects of (±)-Catechin In vitro, in Soil, and in the Field Inderjit, Jarrod L. Pollock, Ragan M. Callaway, and William Holben PMCID: PMC2481294 On the Prevalence of M. avium Subspecies paratuberculosis DNA in the Blood of Healthy Individuals and Patients with Inflammatory Bowel Disease Ramon A. Juste, Natalia Elguezabal, Joseba M. Garrido, Andres Pavon, Maria V. Geijo, Iker Sevilla, Jose-Luis Cabriada, Angel Tejada, Francisco García-Campos, Roberto Casado, Itziar Ochotorena, Ander Izeta, and Robert J. Greenstein PMCID: PMC2434204 Modified Cav1.4 Expression in the Cacna1fnob2 Mouse Due to Alternative Splicing of an ETn Inserted in Exon 2 Clinton J. Doering, Renata Rehak, Stephan Bonfield, Jean B. Peloquin, William K. Stell, Silvina C. Mema, Yves Sauvé, and John E. McRory PMCID: PMC2432030 Autoimmune Pancreatocholangitis, Non-Autoimmune Pancreatitis and Primary Sclerosing Cholangitis: A Comparative Morphological and Immunological Analysis Irene Esposito, Diana Born, Frank Bergmann, Thomas Longerich, Thilo Welsch, Nathalia A. Giese, Markus W. Büchler, Jörg Kleeff, Helmut Friess, and Peter Schirmacher PMCID: PMC2440515 Pathogenesis of Age-Related Osteoporosis: Impaired Mechano-Responsiveness of Bone Is Not the Culprit Olli V. Leppänen, Harri Sievänen, Jarkko Jokihaara, Ilari Pajamäki, Pekka Kannus, and Teppo L. N. Järvinen PMCID: PMC2481275 Visualizing Global Properties of Large Complex Networks Weijiang Li and Hiroyuki Kurata PMCID: PMC2481276 The Proto-Oncogene LRF Is under Post-Transcriptional Control of MiR-20a: Implications for Senescence Laura Poliseno, Letizia Pitto, Marcella Simili, Laura Mariani, Luisa Riccardi, Alessia Ciucci, Milena Rizzo, Monica Evangelista, Alberto Mercatanti, Pier Paolo Pandolfi, and Giuseppe Rainaldi PMCID: PMC2435600 The CXCL12γ Chemokine Displays Unprecedented Structural and Functional Properties that Make It a Paradigm of Chemoattractant Proteins Patricia Rueda, Karl Balabanian, Bernard Lagane, Isabelle Staropoli, Ken Chow, Angelique Levoye, Cedric Laguri, Rabia Sadir, Thierry Delaunay, Elena Izquierdo, Jose Luis Pablos, Elena Lendinez, Antonio Caruz, Diego Franco, Françoise Baleux, Hugues Lortat-Jacob, and Fernando Arenzana-Seisdedos PMCID: PMC2481281 Attitudes Toward Consumption and Conservation of Tigers in China Brian Gratwicke, Judy Mills, Adam Dutton, Grace Gabriel, Barney Long, John Seidensticker, Belinda Wright, Wang You, and Li Zhang PMCID: PMC2435601 Novel MicroRNA Candidates and miRNA-mRNA Pairs in Embryonic Stem (ES) Cells Peili Gu, Jeffrey G. Reid, Xiaolian Gao, Chad A. Shaw, Chad Creighton, Peter L. Tran, Xiaochuan Zhou, Rafal B. Drabek, David L. Steffen, David M. Hoang, Michelle K. Weiss, Arash O. Naghavi, Jad El-daye, Mahjabeen F. Khan, Glen B. Legge, David A. Wheeler, Richard A. Gibbs, Jonathan N. Miller, Austin J. Cooney, and Preethi H. Gunaratne PMCID: PMC2481296 A Microsatellite Guided Insight into the Genetic Status of Adi, an Isolated Hunting-Gathering Tribe of Northeast India S. Krithika, Suvendu Maji, and T. S. Vasulu PMCID: PMC2435608 Population Substructure and Control Selection in Genome-Wide Association Studies Kai Yu, Zhaoming Wang, Qizhai Li, Sholom Wacholder, David J. Hunter, Robert N. Hoover, Stephen Chanock, and Gilles Thomas PMCID: PMC2432498 Sex-Specific Expression of the X-Linked Histone Demethylase Gene Jarid1c in Brain Jun Xu, Xinxian Deng, and Christine M. Disteche PMCID: PMC2438472 A Comparison of Wood Density between Classical Cremonese and Modern Violins Berend C. Stoel and Terry M. Borman PMCID: PMC2438473 RelB-Dependent Stromal Cells Promote T-Cell Leukemogenesis Nuno R. dos Santos, Maryvonne Williame, Stéphanie Gachet, Françoise Cormier, Anne Janin, Debra Weih, Falk Weih, and Jacques Ghysdael PMCID: PMC2440518 Polarized Growth in the Absence of F-Actin in Saccharomyces cerevisiae Exiting Quiescence Annelise Sahin, Bertrand Daignan-Fornier, and Isabelle Sagot PMCID: PMC2440520 Aberrant Expression of Oncogenic and Tumor-Suppressive MicroRNAs in Cervical Cancer Is Required for Cancer Cell Growth Xiaohong Wang, Shuang Tang, Shu-Yun Le, Robert Lu, Janet S. Rader, Craig Meyers, and Zhi-Ming Zheng PMCID: PMC2438475 Potentiation of Nerve Growth Factor-Induced Neurite Outgrowth by Fluvoxamine: Role of Sigma-1 Receptors, IP3 Receptors and Cellular Signaling Pathways Tomoko Nishimura, Tamaki Ishima, Masaomi Iyo, and Kenji Hashimoto PMCID: PMC2435603 Cerebrospinal Fluid B Cells Correlate with Early Brain Inflammation in Multiple Sclerosis Bettina Kuenz, Andreas Lutterotti, Rainer Ehling, Claudia Gneiss, Monika Haemmerle, Carolyn Rainer, Florian Deisenhammer, Michael Schocke, Thomas Berger, and Markus Reindl PMCID: PMC2438478 The Complement Anaphylatoxin C5a Induces Apoptosis in Adrenomedullary Cells during Experimental Sepsis Michael A. Flierl, Daniel Rittirsch, Anthony J. Chen, Brian A. Nadeau, Danielle E. Day, J. Vidya Sarma, Markus S. Huber-Lang, and Peter A. Ward PMCID: PMC2481299 Knee Arthroplasty: Disabilities in Comparison to the General Population and to Hip Arthroplasty Using a French National Longitudinal Survey Agnes Dechartres, Isabelle Boutron, Remy Nizard, Serge Poiraudeau, Carine Roy, Gabriel Baron, Philippe Ravaud, and Jean-François Ravaud PMCID: PMC2432021 Defining Human Embryo Phenotypes by Cohort-Specific Prognostic Factors Sunny H. Jun, Bokyung Choi, Lora Shahine, Lynn M. Westphal, Barry Behr, Renee A. Reijo Pera, Wing H. Wong, and Mylene W. M. Yao PMCID: PMC2432022 A Randomized Controlled Phase IIb Trial of Antigen-Antibody Immunogenic Complex Therapeutic Vaccine in Chronic Hepatitis B Patients Dao-Zhen Xu, Kai Zhao, Li-Min Guo, Xin-Yue Chen, Hui-Fen Wang, Ji-Ming Zhang, Qin Xie, Hong Ren, Wen-Xiang Wang, Lan-Juan Li, Min Xu, Pei Liu, Jun-Qi Niu, Xue-Fan Bai, Xin-Liang Shen, Zheng-Hong Yuan, Xuan-Yi Wang, and Yu-Mei Wen PMCID: PMC2430617 An Automated Phylogenetic Tree-Based Small Subunit rRNA Taxonomy and Alignment Pipeline (STAP) Dongying Wu, Amber Hartman, Naomi Ward, and Jonathan A. Eisen PMCID: PMC2432038 A Common Genomic Framework for a Diverse Assembly of Plasmids in the Symbiotic Nitrogen Fixing Bacteria Lisa C. Crossman, Santiago Castillo-Ramírez, Craig McAnnula, Luis Lozano, Georgios S. Vernikos, José L. Acosta, Zara F. Ghazoui, Ismael Hernández-González, Georgina Meakin, Alan W. Walker, Michael F. Hynes, J. Peter W. Young, J. Allan Downie, David Romero, Andrew W. B. Johnston, Guillermo Dávila, Julian Parkhill, and Víctor González PMCID: PMC2434198 Broccoli Consumption Interacts with GSTM1 to Perturb Oncogenic Signalling Pathways in the Prostate Maria Traka, Amy V. Gasper, Antonietta Melchini, James R. Bacon, Paul W. Needs, Victoria Frost, Andrew Chantry, Alexandra M. E. Jones, Catharine A. Ortori, David A. Barrett, Richard Y. Ball, Robert D. Mills, and Richard F. Mithen PMCID: PMC2430620 FUS-DDIT3 Prevents the Development of Adipocytic Precursors in Liposarcoma by Repressing PPARγ and C/EBPα and Activating eIF4E Pedro A. Pérez-Mancera, Camino Bermejo-Rodríguez, Manuel Sánchez-Martín, Fernando Abollo-Jiménez, Belén Pintado, and Isidro Sánchez-García PMCID: PMC2434200 Trait-Like Brain Activity during Adolescence Predicts Anxious Temperament in Primates Andrew S. Fox, Steven E. Shelton, Terrence R. Oakes, Richard J. Davidson, and Ned H. Kalin PMCID: PMC2430534 In-Cell Biochemistry Using NMR Spectroscopy David S. Burz and Alexander Shekhtman PMCID: PMC2453524 A Role for Polyploidy in the Tumorigenicity of Pim-1-Expressing Human Prostate and Mammary Epithelial Cells Meejeon Roh, Omar E. Franco, Simon W. Hayward, Riet van der Meer, and Sarki A. Abdulkadir PMCID: PMC2440349 An Accurate Definition of the Status of Inactive Hepatitis B Virus Carrier by a Combination of Biomarkers (FibroTest-ActiTest) and Viral Load Yen Ngo, Yves Benhamou, Vincent Thibault, Patrick Ingiliz, Mona Munteanu, Pascal Lebray, Dominique Thabut, Rachel Morra, Djamila Messous, Frederic Charlotte, Françoise Imbert-Bismut, Dominique Rousselot-Bonnefont, Joseph Moussalli, Vlad Ratziu, and Thierry Poynard PMCID: PMC2440801 Baseline Levels of Influenza-Specific CD4 Memory T-Cells Affect T-Cell Responses to Influenza Vaccines Xiao-Song He, Tyson H. Holmes, Sanae Sasaki, Maria C. Jaimes, George W. Kemble, Cornelia L. Dekker, Ann M. Arvin, and Harry B. Greenberg PMCID: PMC2440350 Impaired Spatial Learning Strategies and Novel Object Recognition in Mice Haploinsufficient for the Dual Specificity Tyrosine-Regulated Kinase-1A (Dyrk1A) Glòria Arqué, Vassiliki Fotaki, David Fernández, María Martínez de Lagrán, Maria L. Arbonés, and Mara Dierssen PMCID: PMC2481280 Genomic Counter-Stress Changes Induced by the Relaxation Response Jeffery A. Dusek, Hasan H. Otu, Ann L. Wohlhueter, Manoj Bhasin, Luiz F. Zerbini, Marie G. Joseph, Herbert Benson, and Towia A. Libermann PMCID: PMC2432467 A Visual Metaphor Describing Neural Dynamics in Schizophrenia Nico J. M. van Beveren and Lieuwe de Haan PMCID: PMC2481285 IGF-1, IGFBP-1, and IGFBP-3 Polymorphisms Predict Circulating IGF Levels but Not Breast Cancer Risk: Findings from the Breast and Prostate Cancer Cohort Consortium (BPC3) Alpa V. Patel, Iona Cheng, Federico Canzian, Loïc Le Marchand, Michael J. Thun, Christine D. Berg, Julie Buring, Eugenia E. Calle, Stephen Chanock, Francoise Clavel-Chapelon, David G. Cox, Miren Dorronsoro, Laure Dossus, Christopher A. Haiman, Susan E. Hankinson, Brian E. Henderson, Robert Hoover, David J. Hunter, Rudolf Kaaks, Laurence N. Kolonel, Peter Kraft, Jakob Linseisen, Eiliv Lund, Jonas Manjer, Catherine McCarty, Petra H. M. Peeters, Malcolm C. Pike, Michael Pollak, Elio Riboli, Daniel O. Stram, Anne Tjonneland, Ruth C. Travis, Dimitrios Trichopoulos, Rosario Tumino, Meredith Yeager, Regina G. Ziegler, and Heather Spencer Feigelson PMCID: PMC2440354 Children's Perceptions of Rainforest Biodiversity: Which Animals Have the Lion's Share of Environmental Awareness? Jake L. Snaddon, Edgar C. Turner, and William A. Foster PMCID: PMC2435628 Characterization of a Peptide Domain within the GB Virus C NS5A Phosphoprotein that Inhibits HIV Replication Jinhua Xiang, James H. McLinden, Qing Chang, Emma L. Jordan, and Jack T. Stapleton PMCID: PMC2440355 Superfast Vocal Muscles Control Song Production in Songbirds Coen P. H. Elemans, Andrew F. Mead, Lawrence C. Rome, and Franz Goller PMCID: PMC2440420 RickA Expression Is Not Sufficient to Promote Actin-Based Motility of Rickettsia raoultii Premanand Balraj, Khalid El Karkouri, Guy Vestris, Leon Espinosa, Didier Raoult, and Patricia Renesto PMCID: PMC2440523 Nonsense-Mediated mRNA Decay Impacts MSI-Driven Carcinogenesis and Anti-Tumor Immunity in Colorectal Cancers Jamila El-Bchiri, Agathe Guilloux, Peggy Dartigues, Etienne Loire, Dominique Mercier, Olivier Buhard, Iradj Sobhani, Pierre de la Grange, Didier Auboeuf, Françoise Praz, Jean-François Fléjou, and Alex Duval PMCID: PMC2440797 The Pleiotropic Effects of Simvastatin on Retinal Microvascular Endothelium Has Important Implications for Ischaemic Retinopathies Reinhold J. Medina, Christina L. O'Neill, Adrian B. Devine, Tom A. Gardiner, and Alan W. Stitt PMCID: PMC2440506 Ubiquitination Is Required for Effective Replication of Coxsackievirus B3 Xiaoning Si, Guang Gao, Jerry Wong, Yahong Wang, Jingchun Zhang, and Honglin Luo PMCID: PMC2440516 Avoiding Costly Conservation Mistakes: The Importance of Defining Actions and Costs in Spatial Priority Setting Josie Carwardine, Kerrie A. Wilson, Matt Watts, Andres Etter, Carissa J. Klein, and Hugh P. Possingham PMCID: PMC2440517 Chloroquine Mediated Modulation of Anopheles gambiae Gene Expression Patrícia Abrantes, George Dimopoulos, Ana Rita Grosso, Virgílio E. do Rosário, and Henrique Silveira PMCID: PMC2432468 Intestinal Bacteria Condition Dendritic Cells to Promote IgA Production Joanna C. Massacand, Patrick Kaiser, Bettina Ernst, Aubry Tardivel, Kurt Bürki, Pascal Schneider, and Nicola L. Harris PMCID: PMC2432026 Transcriptional Responses of Arabidopsis thaliana during Wilt Disease Caused by the Soil-Borne Phytopathogenic Bacterium, Ralstonia solanacearum Jian Hu, Xavier Barlet, Laurent Deslandes, Judith Hirsch, Dong Xin Feng, Imre Somssich, and Yves Marco PMCID: PMC2435627 Preferred Spatial Frequencies for Human Face Processing Are Associated with Optimal Class Discrimination in the Machine Matthias S. Keil, Agata Lapedriza, David Masip, and Jordi Vitria PMCID: PMC2435629 Simplifying Consent for HIV Testing Is Associated with an Increase in HIV Testing and Case Detection in Highest Risk Groups, San Francisco January 2003–June 2007 Nicola M. Zetola, Carlos G. Grijalva, Sarah Gertler, C. Bradley Hare, Beth Kaplan, Teri Dowling, Grant Colfax, Mitchell H. Katz, and Jeffrey D. Klausner PMCID: PMC2435630 Mating with Stressed Males Increases the Fitness of Ant Queens Alexandra Schrempf and Jürgen Heinze PMCID: PMC2434203 Systemic Complement Activation in Age-Related Macular Degeneration Hendrik P. N. Scholl, Peter Charbel Issa, Maja Walier, Stefanie Janzer, Beatrix Pollok-Kopp, Florian Börncke, Lars G. Fritsche, Ngaihang V. Chong, Rolf Fimmers, Thomas Wienker, Frank G. Holz, Bernhard H. F. Weber, and Martin Oppermann PMCID: PMC2440421 Human AQP5 Plays a Role in the Progression of Chronic Myelogenous Leukemia (CML) Young Kwang Chae, Sung Koo Kang, Myoung Sook Kim, Janghee Woo, Juna Lee, Steven Chang, Dong-Wook Kim, Myungshin Kim, Seonyang Park, Inho Kim, Bhumsuk Keam, Jiyoung Rhee, Nam Hee Koo, Gyeongsin Park, Soo-Hyun Kim, Se-Eun Jang, Il-Young Kweon, David Sidransky, and Chulso Moon PMCID: PMC2440422 Prenatal Activation of Microglia Induces Delayed Impairment of Glutamatergic Synaptic Function Anne Roumier, Olivier Pascual, Catherine Béchade, Shirley Wakselman, Jean-Christophe Poncer, Eleonore Réal, Antoine Triller, and Alain Bessis PMCID: PMC2440505 Identification of a Common Gene Expression Response in Different Lung Inflammatory Diseases in Rodents and Macaques Jeroen L. A. Pennings, Tjeerd G. Kimman, and Riny Janssen PMCID: PMC2442866 Can Machines Think? Interaction and Perspective Taking with Robots Investigated via fMRI Sören Krach, Frank Hegel, Britta Wrede, Gerhard Sagerer, Ferdinand Binkofski, and Tilo Kircher PMCID: PMC2440351 Lifespan Mental Activity Predicts Diminished Rate of Hippocampal Atrophy Michael J. Valenzuela, Perminder Sachdev, Wei Wen, Xiaohua Chen, and Henry Brodaty PMCID: PMC2440814 Increased Level of Extracellular ATP at Tumor Sites: In Vivo Imaging with Plasma Membrane Luciferase Patrizia Pellegatti, Lizzia Raffaghello, Giovanna Bianchi, Federica Piccardi, Vito Pistoia, and Francesco Di Virgilio PMCID: PMC2440522 Binding to the Minor Groove of the Double-Strand, Tau Protein Prevents DNA from Damage by Peroxidation Yan Wei, Mei-Hua Qu, Xing-Sheng Wang, Lan Chen, Dong-Liang Wang, Ying Liu, Qian Hua, and Rong-Qiao He PMCID: PMC2432501 Maternal Feeding Controls Fetal Biological Clock Hidenobu Ohta, Shanhai Xu, Takahiro Moriya, Masayuki Iigo, Tatsuya Watanabe, Norimichi Nakahata, Hiroshi Chisaka, Takushi Hanita, Tadashi Matsuda, Toshihiro Ohura, Yoshitaka Kimura, Nobuo Yaegashi, Shigeru Tsuchiya, Hajime Tei, and Kunihiro Okamura PMCID: PMC2432029 The Efficacy of Generating Three Independent Anti-HIV-1 siRNAs from a Single U6 RNA Pol III-Expressed Long Hairpin RNA Sheena Saayman, Samantha Barichievy, Alexio Capovilla, Kevin V. Morris, Patrick Arbuthnot, and Marc S. Weinberg PMCID: PMC2434202 Expulsion of Symbiotic Algae during Feeding by the Green Hydra – a Mechanism for Regulating Symbiont Density? Yelena Fishman, Eliahu Zlotkin, and Daniel Sher PMCID: PMC2432043 Destabilization of the Dystrophin-Glycoprotein Complex without Functional Deficits in α-Dystrobrevin Null Muscle Tina M. Bunnell, Michele A. Jaeger, Daniel P. Fitzsimons, Kurt W. Prins, and James M. Ervasti PMCID: PMC2432020 CyclinPred: A SVM-Based Method for Predicting Cyclin Protein Sequences Mridul K. Kalita, Umesh K. Nandal, Ansuman Pattnaik, Anandhan Sivalingam, Gowthaman Ramasamy, Manish Kumar, Gajendra P. S. Raghava, and Dinesh Gupta PMCID: PMC2435623 Effective, Robust Design of Community Mitigation for Pandemic Influenza: A Systematic Examination of Proposed US Guidance Victoria J. Davey, Robert J. Glass, H. Jason Min, Walter E. Beyeler, and Laura M. Glass PMCID: PMC2432023 A Molecular Study of Microbe Transfer between Distant Environments Sean D. Hooper, Jeroen Raes, Konrad U. Foerstner, Eoghan D. Harrington, Daniel Dalevi, and Peer Bork PMCID: PMC2442867 Both Functional LTβ Receptor and TNF Receptor 2 Are Required for the Development of Experimental Cerebral Malaria Dieudonnée Togbe, Paulo Loureiro de Sousa, Mathilde Fauconnier, Victorine Boissay, Lizette Fick, Stefanie Scheu, Klaus Pfeffer, Robert Menard, Georges E. Grau, Bich-Thuy Doan, Jean Claude Beloeil, Laurent Renia, Anna M. Hansen, Helen J. Ball, Nicholas H. Hunt, Bernhard Ryffel, and Valerie F. J. Quesniaux PMCID: PMC2442868 Transcriptome Alteration in the Diabetic Heart by Rosiglitazone: Implications for Cardiovascular Mortality Kitchener D. Wilson, Zongjin Li, Roger Wagner, Patrick Yue, Phillip Tsao, Gergana Nestorova, Mei Huang, David L. Hirschberg, Paul G. Yock, Thomas Quertermous, and Joseph C. Wu PMCID: PMC2481284 Hedonic Taste in Drosophila Revealed by Olfactory Receptors Expressed in Taste Neurons Makoto Hiroi, Teiichi Tanimura, and Frédéric Marion-Poll PMCID: PMC2440521 Periodontal Tissue Regeneration Using Fibroblast Growth Factor -2: Randomized Controlled Phase II Clinical Trial Masahiro Kitamura, Keisuke Nakashima, Yusuke Kowashi, Takeo Fujii, Hidetoshi Shimauchi, Takashi Sasano, Toshi Furuuchi, Mitsuo Fukuda, Toshihide Noguchi, Toshiaki Shibutani, Yukio Iwayama, Shogo Takashiba, Hidemi Kurihara, Masami Ninomiya, Jun-ichi Kido, Toshihiko Nagata, Takafumi Hamachi, Katsumasa Maeda, Yoshitaka Hara, Yuichi Izumi, Takao Hirofuji, Enyu Imai, Masatoshi Omae, Mitsuru Watanuki, and Shinya Murakami PMCID: PMC2432040 Caveolin-1 Influences Vascular Protease Activity and Is a Potential Stabilizing Factor in Human Atherosclerotic Disease Juan A. Rodriguez-Feo, Willem E. Hellings, Frans L. Moll, Jean-Paul P. M. De Vries, Ben J. van Middelaar, Ale Algra, Joost Sluijter, Evelyn Velema, Theo van der Broek, William C. Sessa, Dominique P. V. De Kleijn, and Gerard Pasterkamp PMCID: PMC2432041 Human-Mediated Emergence as a Weed and Invasive Radiation in the Wild of the CD Genome Allotetraploid Rice Species (Oryza, Poaceae) in the Neotropics Gérard Second and Germinal Rouhan PMCID: PMC2434201 A Fully Atomistic Model of the Cx32 Connexon Sergio Pantano, Francesco Zonta, and Fabio Mammano PMCID: PMC2481295 Pharmacologic Stem Cell Based Intervention as a New Approach to Osteoporosis Treatment in Rodents Takayoshi Yamaza, Yasuo Miura, Yanming Bi, Yongzhong Liu, Kentaro Akiyama, Wataru Sonoyama, Voymesh Patel, Silvio Gutkind, Marian Young, Stan Gronthos, Anh Le, Cun-Yu Wang, WanJun Chen, and Songtao Shi PMCID: PMC2440798 Lateral Transfer of a Lectin-Like Antifreeze Protein Gene in Fishes Laurie A. Graham, Stephen C. Lougheed, K. Vanya Ewart, and Peter L. Davies PMCID: PMC2440524 Soldier-Specific Modification of the Mandibular Motor Neurons in Termites Yuki Ishikawa, Hitoshi Aonuma, and Toru Miura PMCID: PMC2435624 Professional and Home-Made Face Masks Reduce Exposure to Respiratory Infections among the General Population Marianne van der Sande, Peter Teunis, and Rob Sabel PMCID: PMC2440799 Waist Circumference and Body Mass Index as Predictors of Health Care Costs Betina Højgaard, Dorte Gyrd-Hansen, Kim Rose Olsen, Jes Søgaard, and Thorkild I. A. Sørensen PMCID: PMC2440800 Knowledge, Awareness and Practices Regarding Dengue Fever among the Adult Population of Dengue Hit Cosmopolitan Ahmed Itrat, Abdullah Khan, Sunniya Javaid, Mahwash Kamal, Hassan Khan, Sannia Javed, Saira Kalia, Adil Haleem Khan, Muhammad Imran Sethi, and Imtiaz Jehan PMCID: PMC2440812 EEF2 Analysis Challenges the Monophyly of Archaeplastida and Chromalveolata Eunsoo Kim and Linda E. Graham PMCID: PMC2440802 The Tumorigenicity of Mouse Embryonic Stem Cells and In Vitro Differentiated Neuronal Cells Is Controlled by the Recipients' Immune Response Ralf Dressel, Jan Schindehütte, Tanja Kuhlmann, Leslie Elsner, Peter Novota, Paul Christian Baier, Arne Schillert, Heike Bickeböller, Thomas Herrmann, Claudia Trenkwalder, Walter Paulus, and Ahmed Mansouri PMCID: PMC2440803 Adaptation of Saccharomyces cerevisiae Cells to High Ethanol Concentration and Changes in Fatty Acid Composition of Membrane and Cell Size Thai Nho Dinh, Keisuke Nagahisa, Takashi Hirasawa, Chikara Furusawa, and Hiroshi Shimizu PMCID: PMC2440543 A Three-Way Comparison of Tuberculin Skin Testing, QuantiFERON-TB Gold and T-SPOT.TB in Children Tom G. Connell, Nicole Ritz, Georgia A. Paxton, Jim P. Buttery, Nigel Curtis, and Sarath C. Ranganathan PMCID: PMC2440545 Haptic Perception of Object Curvature in Parkinson's Disease Jürgen Konczak, Kuan-yi Li, Paul J. Tuite, and Howard Poizner PMCID: PMC2440419 Automated Identification of Acute Hepatitis B Using Electronic Medical Record Data to Facilitate Public Health Surveillance Michael Klompas, Gillian Haney, Daniel Church, Ross Lazarus, Xuanlin Hou, and Richard Platt PMCID: PMC2440348 Probing the Dynamics of Identified Neurons with a Data-Driven Modeling Approach Thomas Nowotny, Rafael Levi, and Allen I. Selverston PMCID: PMC2440808 Comparative Analysis of Viral Gene Expression Programs during Poxvirus Infection: A Transcriptional Map of the Vaccinia and Monkeypox Genomes Kathleen H. Rubins, Lisa E. Hensley, George W. Bell, Chunlin Wang, Elliot J. Lefkowitz, Patrick O. Brown, and David A. Relman PMCID: PMC2440811 Galectin-4 Controls Intestinal Inflammation by Selective Regulation of Peripheral and Mucosal T Cell Apoptosis and Cell Cycle Daniela Paclik, Silvio Danese, Uta Berndt, Bertram Wiedenmann, Axel Dignass, and Andreas Sturm PMCID: PMC2440804 Triacylglycerol Fatty Acid Composition in Diet-Induced Weight Loss in Subjects with Abnormal Glucose Metabolism – the GENOBIN Study Ursula Schwab, Tuulikki Seppänen-Laakso, Laxman Yetukuri, Jyrki Ågren, Marjukka Kolehmainen, David E. Laaksonen, Anna-Liisa Ruskeepää, Helena Gylling, Matti Uusitupa, Matej Orešič, and for the GENOBIN Study Group PMCID: PMC2440352 Effects of Unexpected Chords and of Performer's Expression on Brain Responses and Electrodermal Activity Stefan Koelsch, Simone Kilches, Nikolaus Steinbeis, and Stefanie Schelinski PMCID: PMC2435625 Are Child and Adolescent Responses to Placebo Higher in Major Depression than in Anxiety Disorders? A Systematic Review of Placebo-Controlled Trials David Cohen, Emmanuelle Deniau, Alejandro Maturana, Marie-Laure Tanguy, Nicolas Bodeau, Réal Labelle, Jean-Jacques Breton, and Jean-Marc Guile PMCID: PMC2435626 Systematic Evaluation of Candidate Blood Markers for Detecting Ovarian Cancer Chana Palmer, Xiaobo Duan, Sarah Hawley, Nathalie Scholler, Jason D. Thorpe, Rob A. Sahota, May Q. Wong, Andrew Wray, Lindsay A. Bergan, Charles W. Drescher, Martin W. McIntosh, Patrick O. Brown, Brad H. Nelson, and Nicole Urban PMCID: PMC2440813 IGF1 Is a Common Target Gene of Ewing's Sarcoma Fusion Proteins in Mesenchymal Progenitor Cells Luisa Cironi, Nicolò Riggi, Paolo Provero, Natalie Wolf, Mario-Luca Suvà, Domizio Suvà, Vincent Kindler, and Ivan Stamenkovic PMCID: PMC2481291 fMRI Evidence for a Dual Process Account of the Speed-Accuracy Tradeoff in Decision-Making Jason Ivanoff, Philip Branning, and René Marois PMCID: PMC2440815 Phase 1 Trial of Malaria Transmission Blocking Vaccine Candidates Pfs25 and Pvs25 Formulated with Montanide ISA 51 Yimin Wu, Ruth D. Ellis, Donna Shaffer, Erica Fontes, Elissa M. Malkin, Siddhartha Mahanty, Michael P. Fay, David Narum, Kelly Rausch, Aaron P. Miles, Joan Aebig, Andrew Orcutt, Olga Muratova, Guanhong Song, Lynn Lambert, Daming Zhu, Kazutoyo Miura, Carole Long, Allan Saul, Louis H. Miller, and Anna P. Durbin PMCID: PMC2440546 Oct-4 Expression Maintained Cancer Stem-Like Properties in Lung Cancer-Derived CD133-Positive Cells Yu-Chih Chen, Han-Shui Hsu, Yi-Wei Chen, Tung-Hu Tsai, Chorng-Kuang How, Chien-Ying Wang, Shih-Chieh Hung, Yuh-Lih Chang, Ming-Long Tsai, Yi-Yen Lee, Hung-Hai Ku, and Shih-Hwa Chiou PMCID: PMC2440807 Modified Whole-Mount In situ Hybridization Protocol for the Detection of Transgene Expression in Electroporated Chick Embryos Natacha Arede and Ana T. Tavares PMCID: PMC2441435 Tankyrase 1 and Tankyrase 2 Are Essential but Redundant for Mouse Embryonic Development Y. Jeffrey Chiang, Susan J. Hsiao, Dena Yver, Samuel W. Cushman, Lino Tessarollo, Susan Smith, and Richard J. Hodes PMCID: PMC2441437 Principles of Glomerular Organization in the Human Olfactory Bulb – Implications for Odor Processing Alison Maresh, Diego Rodriguez Gil, Mary C. Whitman, and Charles A. Greer PMCID: PMC2440537 Finite Size Effects in Simulations of Protein Aggregation Amol Pawar and Giorgio Favrin PMCID: PMC2441439 The Role of Cardiac Troponin T Quantity and Function in Cardiac Development and Dilated Cardiomyopathy Ferhaan Ahmad, Sanjay K. Banerjee, Michele L. Lage, Xueyin N. Huang, Stephen H. Smith, Samir Saba, Jennifer Rager, David A. Conner, Andrzej M. Janczewski, Kimimasa Tobita, Joseph P. Tinney, Ivan P. Moskowitz, Antonio R. Perez-Atayde, Bradley B. Keller, Michael A. Mathier, Sanjeev G. Shroff, Christine E. Seidman, and J. G. Seidman PMCID: PMC2441440 Sequence Information Encoded in DNA that May Influence Long-Range Chromatin Structure Correlates with Human Chromosome Functions Taichi E. Takasuka, Alfred Cioffi, and Arnold Stein PMCID: PMC2440353 Phase Locking Induces Scale-Free Topologies in Networks of Coupled Oscillators Irene Sendiña-Nadal, Javier M. Buldú, Inmaculada Leyva, and Stefano Boccaletti PMCID: PMC2440542 Local Alignment Refinement Using Structural Assessment Pierre Chodanowski, Aurélien Grosdidier, Ernest Feytmans, and Olivier Michielin PMCID: PMC2440426 Use of Evidence-Based Practices in Pregnancy and Childbirth: South East Asia Optimising Reproductive and Child Health in Developing Countries Project The SEA-ORCHID Study Group PMCID: PMC2440816 Birds Reveal their Personality when Singing László Zsolt Garamszegi, Marcel Eens, and János Török PMCID: PMC2441454 Functional Analysis of Spontaneous Cell Movement under Different Physiological Conditions Hiroaki Takagi, Masayuki J. Sato, Toshio Yanagida, and Masahiro Ueda PMCID: PMC2444018 The C/H3 Domain of p300 Is Required to Protect VRK1 and VRK2 from their Downregulation Induced by p53 Alberto Valbuena, Sandra Blanco, Francisco M. Vega, and Pedro A. Lazo PMCID: PMC2441436 Cognitive Components of Regularity Processing in the Auditory Domain Stefan Koelsch and Daniela Sammler PMCID: PMC2440538 Phylogenetic Detection of Recombination with a Bayesian Prior on the Distance between Trees Leonardo de Oliveira Martins, Élcio Leal, and Hirohisa Kishino PMCID: PMC2440540 Insight into Microevolution of Yersinia pestis by Clustered Regularly Interspaced Short Palindromic Repeats Yujun Cui, Yanjun Li, Olivier Gorgé, Mikhail E. Platonov, Yanfeng Yan, Zhaobiao Guo, Christine Pourcel, Svetlana V. Dentovskaya, Sergey V. Balakhonov, Xiaoyi Wang, Yajun Song, Andrey P. Anisimov, Gilles Vergnaud, and Ruifu Yang PMCID: PMC2440536 Variants of ST8SIA1 Are Associated with Risk of Developing Multiple Sclerosis Seema Husain, Cagri Yildirim-Toruner, Justin P. Rubio, Judith Field, The Southern MS Genetics Consortium, Marvin Schwalb, Stuart Cook, Marcella Devoto, and Emilia Vitale PMCID: PMC2440423 The Actinome of Dictyostelium discoideum in Comparison to Actins and Actin-Related Proteins from Other Organisms Jayabalan M. Joseph, Petra Fey, Nagendran Ramalingam, Xiao I. Liu, Meino Rohlfs, Angelika A. Noegel, Annette Müller-Taubenberger, Gernot Glöckner, and Michael Schleicher PMCID: PMC2441452 Genes Differentially Expressed in Conidia and Hyphae of Aspergillus fumigatus upon Exposure to Human Neutrophils Janyce A. Sugui, H. Stanley Kim, Kol A. Zarember, Yun C. Chang, John I. Gallin, Willian C. Nierman, and Kyung J. Kwon-Chung PMCID: PMC2481287 Epigenotyping in Peripheral Blood Cell DNA and Breast Cancer Risk: A Proof of Principle Study Martin Widschwendter, Sophia Apostolidou, Elke Raum, Dietrich Rothenbacher, Heidi Fiegl, Usha Menon, Christa Stegmaier, Ian J. Jacobs, and Hermann Brenner PMCID: PMC2442168 The CXC-Chemokine CXCL4 Interacts with Integrins Implicated in Angiogenesis Sallouha Aidoudi, Kinga Bujakowska, Nelly Kieffer, and Andreas Bikfalvi PMCID: PMC2481302 PKCε Stimulated Arginine Methylation of RIP140 for Its Nuclear-Cytoplasmic Export in Adipocyte Differentiation Pawan Gupta, Ping-Chih Ho, M. D. Mostaqul Huq, Amjad Ali Khan, Nien-Pei Tsai, and Li-Na Wei PMCID: PMC2440817 Genetic Immunisation by Liver Stage Antigen 3 Protects Chimpanzees against Malaria despite Low Immune Responses Pierre Daubersies, Benjamin Ollomo, Jean-Pierre Sauzet, Karima Brahimi, Blanca-Liliana Perlaza, Wijnand Eling, Hubert Moukana, Pierre Rouquet, Charles de Taisne, and Pierre Druilhe PMCID: PMC2441826 Direct Infection and Replication of Naturally Occurring Hepatitis C Virus Genotypes 1, 2, 3 and 4 in Normal Human Hepatocyte Cultures Martina Buck PMCID: PMC2442186 Modelling the Epidemiological Impact of Intermittent Preventive Treatment against Malaria in Infants Amanda Ross, Melissa Penny, Nicolas Maire, Alain Studer, Ilona Carneiro, David Schellenberg, Brian Greenwood, Marcel Tanner, and Thomas Smith PMCID: PMC2441827 A Network Model for the Correlation between Epistasis and Genomic Complexity Rafael Sanjuán and Miguel R. Nebot PMCID: PMC2481279 Potential Effects of Oilseed Rape Expressing Oryzacystatin-1 (OC-1) and of Purified Insecticidal Proteins on Larvae of the Solitary Bee Osmia bicornis Roger Konrad, Natalie Ferry, Angharad M. R. Gatehouse, and Dirk Babendreier PMCID: PMC2441441 Interferon-Gamma Release Assay for the Diagnosis of Latent TB Infection – Analysis of Discordant Results, when Compared to the Tuberculin Skin Test Albert Nienhaus, Anja Schablon, and Roland Diel PMCID: PMC2441828 Amelioration of Streptozotocin-Induced Diabetes in Mice with Cells Derived from Human Marrow Stromal Cells Min Zhao, Stephanie A. Amiel, Sanaz Ajami, Jie Jiang, Mohamed Rela, Nigel Heaton, and Guo Cai Huang PMCID: PMC2441861 Monocytes from Cystic Fibrosis Patients Are Locked in an LPS Tolerance State: Down-Regulation of TREM-1 as Putative Underlying Mechanism Carlos del Fresno, Vanesa Gómez-Piña, Vanesa Lores, Alessandra Soares-Schanoski, Irene Fernández-Ruiz, Blas Rojo, Rodolfo Alvarez-Sala, Ernesto Caballero-Garrido, Felipe García, Tania Veliz, Francisco Arnalich, Pablo Fuentes-Prior, Francisco García-Río, and Eduardo López-Collazo PMCID: PMC2442190 Histone Deacetylases Control Neurogenesis in Embryonic Brain by Inhibition of BMP2/4 Signaling Maya Shakèd, Kathrin Weissmüller, Hanno Svoboda, Peter Hortschansky, Norikazu Nishino, Stefan Wölfl, and Kerry L. Tucker PMCID: PMC2441862 Changes in Gray Matter Induced by Learning—Revisited Joenna Driemeyer, Janina Boyke, Christian Gaser, Christian Büchel, and Arne May PMCID: PMC2447176 Genomic Instability Is Associated with Natural Life Span Variation in Saccharomyces cerevisiae Hong Qin, Meng Lu, and David S. Goldfarb PMCID: PMC2441830 Targeted Development of Registries of Biological Parts Jean Peccoud, Megan F. Blauvelt, Yizhi Cai, Kristal L. Cooper, Oswald Crasta, Emily C. DeLalla, Clive Evans, Otto Folkerts, Blair M. Lyons, Shrinivasrao P. Mane, Rebecca Shelton, Matthew A. Sweede, and Sally A. Waldon PMCID: PMC2441434 An Integrated Epigenetic and Genetic Analysis of DNA Methyltransferase Genes (DNMTs) in Tumor Resistant and Susceptible Chicken Lines Ying Yu, Huanmin Zhang, Fei Tian, Wensheng Zhang, Hongbin Fang, and Jiuzhou Song PMCID: PMC2481300 Non-Linear Population Firing Rates and Voltage Sensitive Dye Signals in Visual Areas 17 and 18 to Short Duration Stimuli David Eriksson, Tamas Tompa, and Per E. Roland PMCID: PMC2441438 Sequences, Annotation and Single Nucleotide Polymorphism of the Major Histocompatibility Complex in the Domestic Cat Naoya Yuhki, James C. Mullikin, Thomas Beck, Robert Stephens, and Stephen J. O'Brien PMCID: PMC2453318 The Angio-Fibrotic Switch of VEGF and CTGF in Proliferative Diabetic Retinopathy Esther J. Kuiper, Frans A. Van Nieuwenhoven, Marc D. de Smet, Jan C. van Meurs, Michael W. Tanck, Noelynn Oliver, Ingeborg Klaassen, Cornelis J. F. Van Noorden, Roel Goldschmeding, and Reinier O. Schlingemann PMCID: PMC2443281 Molecular Characterization of the Gastrula in the Turtle Emys orbicularis: An Evolutionary Perspective on Gastrulation Marion Coolen, Delphine Nicolle, Jean-Louis Plouhinec, Aurélie Gombault, Tatjana Sauka-Spengler, Arnaud Menuet, Claude Pieau, and Sylvie Mazan PMCID: PMC2442194 Protein Solubility and Folding Enhancement by Interaction with RNA Seong Il Choi, Kyoung Sim Han, Chul Woo Kim, Ki-Sun Ryu, Byung Hee Kim, Kyun-Hwan Kim, Seo-Il Kim, Tae Hyun Kang, Hang-Cheol Shin, Keo-Heun Lim, Hyo Kyung Kim, Jeong-Min Hyun, and Baik L. Seong PMCID: PMC2444022 Female Dominance over Males in Primates: Self-Organisation and Sexual Dimorphism Charlotte K. Hemelrijk, Jan Wantia, and Karin Isler PMCID: PMC2441829 Diversity and Evolution of Coral Fluorescent Proteins Naila O. Alieva, Karen A. Konzen, Steven F. Field, Ella A. Meleshkevitch, Marguerite E. Hunt, Victor Beltran-Ramirez, David J. Miller, Jörg Wiedenmann, Anya Salih, and Mikhail V. Matz PMCID: PMC2481297 Activity-Dependent Shedding of the NMDA Receptor Glycine Binding Site by Matrix Metalloproteinase 3: A PUTATIVE Mechanism of Postsynaptic Plasticity Thorsten Pauly, Miriam Ratliff, Eweline Pietrowski, Rainer Neugebauer, Andrea Schlicksupp, Joachim Kirsch, and Jochen Kuhse PMCID: PMC2443283 A Novel Strategy Involved Anti-Oxidative Defense: The Conversion of NADH into NADPH by a Metabolic Network Ranji Singh, Joseph Lemire, Ryan J. Mailloux, and Vasu D. Appanna PMCID: PMC2443280 Evolution of Streptococcus pneumoniae and Its Close Commensal Relatives Mogens Kilian, Knud Poulsen, Trinelise Blomqvist, Leiv S. Håvarstein, Malene Bek-Thomsen, Hervé Tettelin, and Uffe B. S. Sørensen PMCID: PMC2444020 Implication of New WHO Growth Standards on Identification of Risk Factors and Estimated Prevalence of Malnutrition in Rural Malawian Infants Marc-André Prost, Andreas Jahn, Sian Floyd, Hazzie Mvula, Eleneus Mwaiyeghele, Venance Mwinuka, Thomas Mhango, Amelia C. Crampin, Nuala McGrath, Paul E. M. Fine, and Judith R. Glynn PMCID: PMC2442189 Virus-Like Particles of SARS-Like Coronavirus Formed by Membrane Proteins from Different Origins Demonstrate Stimulating Activity in Human Dendritic Cells Bingke Bai, Qinxue Hu, Hui Hu, Peng Zhou, Zhengli Shi, Jin Meng, Baojing Lu, Yi Huang, Panyong Mao, and Hanzhong Wang PMCID: PMC2441860 Nerve Growth Factor Stimulates Interaction of Cayman Ataxia Protein BNIP-H/Caytaxin with Peptidyl-Prolyl Isomerase Pin1 in Differentiating Neurons Jan Paul Buschdorf, Li Li Chew, Unice Jim Kim Soh, Yih-Cherng Liou, and Boon Chuan Low PMCID: PMC2442193 Does Sex-Selective Predation Stabilize or Destabilize Predator-Prey Dynamics? David S. Boukal, Luděk Berec, and Vlastimil Křivan PMCID: PMC2444021 UV-Light Exposed Prion Protein Fails to Form Amyloid Fibrils Abhay Kumar Thakur and Ch Mohan Rao PMCID: PMC2442654 Specific and Sensitive Detection of H. pylori in Biological Specimens by Real-Time RT-PCR and In Situ Hybridization Hui Liu, Arifur Rahman, Cristina Semino-Mora, Sonia Q. Doi, and Andre Dubois PMCID: PMC2481290 Differential Effects of Migration and Deportation on HIV Infection among Male and Female Injection Drug Users in Tijuana, Mexico Steffanie A. Strathdee, Remedios Lozada, Victoria D. Ojeda, Robin A. Pollini, Kimberly C. Brouwer, Alicia Vera, Wayne Cornelius, Lucie Nguyen, Carlos Magis-Rodriguez, Thomas L. Patterson, and for Proyecto El Cuete PMCID: PMC2467493 Influenza Virus in Human Exhaled Breath: An Observational Study Patricia Fabian, James J. McDevitt, Wesley H. DeHaan, Rita O. P. Fung, Benjamin J. Cowling, Kwok Hung Chan, Gabriel M. Leung, and Donald K. Milton PMCID: PMC2442192 Major Histocompatibility Complex Based Resistance to a Common Bacterial Pathogen of Amphibians Seth M. Barribeau, Jandouwe Villinger, and Bruce Waldman PMCID: PMC2443284 High Throughput Automated Allele Frequency Estimation by Pyrosequencing Julie Doostzadeh, Shadi Shokralla, Farnaz Absalan, Roxana Jalili, Sharareh Mohandessi, James W. Langston, Ronald W. Davis, Mostafa Ronaghi, and Baback Gharizadeh PMCID: PMC2442187 Modulating Vesicle Priming Reveals that Vesicle Immobilization Is Necessary but not Sufficient for Fusion-Competence Ofer Yizhar and Uri Ashery PMCID: PMC2444019 Identification of a Neuropeptide S Responsive Circuitry Shaping Amygdala Activity via the Endopiriform Nucleus Susanne Meis, Jorge Ricardo Bergado-Acosta, Yuchio Yanagawa, Kunihiko Obata, Oliver Stork, and Thomas Munsch PMCID: PMC2442874 Molecular Subsets in the Gene Expression Signatures of Scleroderma Skin Ausra Milano, Sarah A. Pendergrass, Jennifer L. Sargent, Lacy K. George, Timothy H. McCalmont, M. Kari Connolly, and Michael L. Whitfield PMCID: PMC2481301 Structure-Activity Relationship and Substrate-Dependent Phenomena in Effects of Ginsenosides on Activities of Drug-Metabolizing P450 Enzymes Miao Hao, Yuqing Zhao, Peizhan Chen, He Huang, Hong Liu, Hualiang Jiang, Ruiwen Zhang, and Hui Wang PMCID: PMC2442655 Age-Specific Epigenetic Drift in Late-Onset Alzheimer's Disease Sun-Chong Wang, Beatrice Oelze, and Axel Schumacher PMCID: PMC2444024 The Protein Phosphatase 7 Regulates Phytochrome Signaling in Arabidopsis Thierry Genoud, Marcela Treviño Santa Cruz, Tea Kulisic, Francesca Sparla, Christian Fankhauser, and Jean-Pierre Métraux PMCID: PMC2444027 A 28,000 Years Old Cro-Magnon mtDNA Sequence Differs from All Potentially Contaminating Modern Sequences David Caramelli, Lucio Milani, Stefania Vai, Alessandra Modi, Elena Pecchioli, Matteo Girardi, Elena Pilli, Martina Lari, Barbara Lippi, Annamaria Ronchitelli, Francesco Mallegni, Antonella Casoli, Giorgio Bertorelle, and Guido Barbujani PMCID: PMC2444030 Defects in Actin Dynamics Lead to an Autoinflammatory Condition through the Upregulation of CXCL5 Angela M. Verdoni, Richard S. Smith, Akihiro Ikeda, and Sakae Ikeda PMCID: PMC2442876 Native Bacterial Endophytes Promote Host Growth in a Species-Specific Manner; Phytohormone Manipulations Do Not Result in Common Growth Responses Hoang Hoa Long, Dominik D. Schmidt, and Ian T. Baldwin PMCID: PMC2444036 Modulation of NKT Cell Development by B7-CD28 Interaction: An Expanding Horizon for Costimulation Xincheng Zheng, Huiming Zhang, Lijie Yin, Chyung-Ru Wang, Yang Liu, and Pan Zheng PMCID: PMC2442875 The Polycomb Repressive Complex 2 Is a Potential Target of SUMO Modifications Eva Madi Riising, Roberto Boggio, Susanna Chiocca, Kristian Helin, and Diego Pasini PMCID: PMC2442188 Identification of a Regulatory T Cell Specific Cell Surface Molecule that Mediates Suppressive Signals and Induces Foxp3 Expression Rui Wang, Qi Wan, Lina Kozhaya, Hodaka Fujii, and Derya Unutmaz PMCID: PMC2442191 Advances in Quantitative Hepcidin Measurements by Time-of-Flight Mass Spectrometry Dorine W. Swinkels, Domenico Girelli, Coby Laarakkers, Joyce Kroot, Natascia Campostrini, Erwin H. J. M. Kemna, and Harold Tjalsma PMCID: PMC2442656 Neither Replication nor Simulation Supports a Role for the Axon Guidance Pathway in the Genetics of Parkinson's Disease Yonghong Li, Charles Rowland, Georgia Xiromerisiou, Robert J. Lagier, Steven J. Schrodi, Efthimios Dradiotis, David Ross, Nam Bui, Joseph Catanese, Konstantinos Aggelakis, Andrew Grupe, and Georgios Hadjigeorgiou PMCID: PMC2442653 Genome Holography: Deciphering Function-Form Motifs from Gene Expression Data Asaf Madi, Yonatan Friedman, Dalit Roth, Tamar Regev, Sharron Bransburg-Zabary, and Eshel Ben Jacob PMCID: PMC2444029 Analysis of Venezuelan Equine Encephalitis Replicon Particles Packaged in Different Coats Kurt I. Kamrud, Kim D. Alterson, Chasity Andrews, Laura O. Copp, Whitney C. Lewis, Bolyn Hubby, Deepa Patel, Jonathan O. Rayner, Todd Talarico, and Jonathan F. Smith PMCID: PMC2447172 Evaluating the Influence of Epidemiological Parameters and Host Ecology on the Spread of Phocine Distemper Virus through Populations of Harbour Seals Catriona M. Harris, Justin M. J. Travis, and John Harwood PMCID: PMC2442657 Immunological Monitoring of Renal Transplant Recipients to Predict Acute Allograft Rejection Following the Discontinuation of Tacrolimus Ellen Kreijveld, Hans J. P. M. Koenen, Bram van Cranenbroek, Esther van Rijssen, Irma Joosten, and Luuk B. Hilbrands PMCID: PMC2442873 A Meta-Analysis of Microarray Gene Expression in Mouse Stem Cells: Redefining Stemness Yvonne J. K. Edwards, Kevin Bryson, and David T. Jones PMCID: PMC2444034 Murine Leukemia Virus Spreading in Mice Impaired in the Biogenesis of Secretory Lysosomes and Ca2+-Regulated Exocytosis Wai-Tsing Chan, Nathan M. Sherer, Pradeep D. Uchil, Edward K. Novak, Richard T. Swank, and Walther Mothes PMCID: PMC2443282 Role of Sox-9, ER81 and VE-Cadherin in Retinoic Acid-Mediated Trans-Differentiation of Breast Cancer Cells Yoshimi Endo, Kamla Deonauth, Priya Prahalad, Becky Hoxter, Yuelin Zhu, and Stephen W. Byers PMCID: PMC2444023 Claudin-1 Is a p63 Target Gene with a Crucial Role in Epithelial Development Teresa Lopardo, Nadia Lo Iacono, Barbara Marinari, Maria L. Giustizieri, Daniel G. Cyr, Giorgio Merlo, Francesca Crosti, Antonio Costanzo, and Luisa Guerrini PMCID: PMC2453228 Visual Working Memory Capacity and Proactive Interference Joshua K. Hartshorne PMCID: PMC2447156 High Protein Binding and Cidal Activity against Penicillin-Resistant S. pneumoniae: A Cefditoren In Vitro Pharmacodynamic Simulation David Sevillano, Lorenzo Aguilar, Luis Alou, María-José Giménez, Natalia González, Martha Torrico, Fabio Cafini, Asunción Fenoll, Pilar Coronel, and José Prieto PMCID: PMC2453320 Mitochondrial Ca2+ Overload Underlies Aβ Oligomers Neurotoxicity Providing an Unexpected Mechanism of Neuroprotection by NSAIDs Sara Sanz-Blasco, Ruth A. Valero, Ignacio Rodríguez-Crespo, Carlos Villalobos, and Lucía Núñez PMCID: PMC2447871 Substantial Alterations of the Cutaneous Bacterial Biota in Psoriatic Lesions Zhan Gao, Chi-hong Tseng, Bruce E. Strober, Zhiheng Pei, and Martin J. Blaser PMCID: PMC2447873 Massively Parallel Interrogation of Aptamer Sequence, Structure and Function Nicholas O. Fischer, Jeffrey B.-H. Tok, and Theodore M. Tarasow PMCID: PMC2444025 TAF6δ Controls Apoptosis and Gene Expression in the Absence of p53 Emmanuelle Wilhelm, François-Xavier Pellay, Arndt Benecke, and Brendan Bell PMCID: PMC2444026 Global Regulation of Nucleotide Biosynthetic Genes by c-Myc Yen-Chun Liu, Feng Li, Jesse Handler, Cheng Ran Lisa Huang, Yan Xiang, Nicola Neretti, John M. Sedivy, Karen I. Zeller, and Chi V. Dang PMCID: PMC2444028 Seventeen New Complete mtDNA Sequences Reveal Extensive Mitochondrial Genome Evolution within the Demospongiae Xiujuan Wang and Dennis V. Lavrov PMCID: PMC2444032 A Bistable Gene Switch for Antibiotic Biosynthesis: The Butyrolactone Regulon in Streptomyces coelicolor Sarika Mehra, Salim Charaniya, Eriko Takano, and Wei-Shou Hu PMCID: PMC2444045 Prelimbic and Infralimbic Prefrontal Cortex Interact during Fast Network Oscillations Karlijn I. van Aerde, Tim S. Heistek, and Huibert D. Mansvelder PMCID: PMC2444037 Transmembrane Protein Oxygen Content and Compartmentalization of Cells Rajkumar Sasidharan, Andrew Smith, and Mark Gerstein PMCID: PMC2443287 Antimalarial Therapy Selection for Quinolone Resistance among Escherichia coli in the Absence of Quinolone Exposure, in Tropical South America Ross J. Davidson, Ian Davis, Barbara M. Willey, Keyro Rizg, Shelly Bolotin, Vanessa Porter, Jane Polsky, Nick Daneman, Allison McGeer, Paul Yang, Dennis Scolnik, Roy Rowsell, Olga Imas, and Michael S. Silverman PMCID: PMC2481278 Forty Years Trends in Timing of Pubertal Growth Spurt in 157,000 Danish School Children Lise Aksglaede, Lina W. Olsen, Thorkild I. A. Sørensen, and Anders Juul PMCID: PMC2443288 Binding of α2ML1 to the Low Density Lipoprotein Receptor-Related Protein 1 (LRP1) Reveals a New Role for LRP1 in the Human Epidermis Marie-Florence Galliano, Eve Toulza, Nathalie Jonca, Steven L. Gonias, Guy Serre, and Marina Guerrin PMCID: PMC2453322 Genetic Variation and De Novo Mutations in the Parthenogenetic Caucasian Rock Lizard Darevskia unisexualis Tatiana N. Badaeva, Daria N. Malysheva, Vitaly I. Korchagin, and Alexei P. Ryskov PMCID: PMC2447159 Willingness of Men Who Have Sex with Men (MSM) in the United States to Be Circumcised as Adults to Reduce the Risk of HIV Infection Elin B. Begley, Krishna Jafa, Andrew C. Voetsch, James D. Heffelfinger, Craig B. Borkowf, and Patrick S. Sullivan PMCID: PMC2443289 Genistein-Supplemented Diet Decreases Malaria Liver Infection in Mice and Constitutes a Potential Prophylactic Strategy Margarida Cunha-Rodrigues, Sílvia Portugal, Miguel Prudêncio, Lígia A. Gonçalves, Cristina Casalou, Dominik Buger, Robert Sauerwein, Werner Haas, and Maria M. Mota PMCID: PMC2443290 Differential Interactions of the Autonomous Pathway RRM Proteins and Chromatin Regulators in the Silencing of Arabidopsis Targets Isabel Bäurle and Caroline Dean PMCID: PMC2444039 Oncogenic BRAF Regulates Melanoma Proliferation through the Lineage Specific Factor MITF Claudia Wellbrock, Sareena Rana, Hugh Paterson, Helen Pickersgill, Thijn Brummelkamp, and Richard Marais PMCID: PMC2444043 AIP4/Itch Regulates Notch Receptor Degradation in the Absence of Ligand Patricia Chastagner, Alain Israël, and Christel Brou PMCID: PMC2444042 Rheological Characterization of the Bundling Transition in F-Actin Solutions Induced by Methylcellulose Simone Köhler, Oliver Lieleg, and Andreas R. Bausch PMCID: PMC2443286 Type I Interferon: Potential Therapeutic Target for Psoriasis? Yihong Yao, Laura Richman, Chris Morehouse, Melissa de los Reyes, Brandon W. Higgs, Anmarie Boutrin, Barbara White, Anthony Coyle, James Krueger, Peter A. Kiener, and Bahija Jallal PMCID: PMC2481274 Paleodistributions and Comparative Molecular Phylogeography of Leafcutter Ants (Atta spp.) Provide New Insight into the Origins of Amazonian Diversity Scott E. Solomon, Mauricio Bacci, Jr, Joaquim Martins, Jr, Giovanna Gonçalves Vinha, and Ulrich G. Mueller PMCID: PMC2447876 Evidence of Henipavirus Infection in West African Fruit Bats David T. S. Hayman, Richard Suu-Ire, Andrew C. Breed, Jennifer A. McEachern, Linfa Wang, James L. N. Wood, and Andrew A. Cunningham PMCID: PMC2453319 Adaptive Immune Neuroprotection in G93A-SOD1 Amyotrophic Lateral Sclerosis Mice Rebecca Banerjee, R. Lee Mosley, Ashley D. Reynolds, Alok Dhar, Vernice Jackson-Lewis, Paul H. Gordon, Serge Przedborski, and Howard E. Gendelman PMCID: PMC2481277 A Motion Illusion Reveals Mechanisms of Perceptual Stabilization Anton L. Beer, Andreas H. Heckel, and Mark W. Greenlee PMCID: PMC2453321 Interaction of Hyperalgesia and Sensory Loss in Complex Regional Pain Syndrome Type I (CRPS I) Volker Huge, Meike Lauchart, Stefanie Förderreuther, Wibke Kaufhold, Michael Valet, Shahnaz Christina Azad, Antje Beyer, and Walter Magerl PMCID: PMC2453233 Splice Variants of the Forkhead Box Protein AFX Exhibit Dominant Negative Activity and Inhibit AFXα-Mediated Tumor Cell Apoptosis Eun Jig Lee, Jeong Mo Kim, Mi Kyung Lee, and J. Larry Jameson PMCID: PMC2447181 Marine Biofilm Bacteria Evade Eukaryotic Predation by Targeted Chemical Defense Carsten Matz, Jeremy S. Webb, Peter J. Schupp, Shui Yen Phang, Anahit Penesyan, Suhelen Egan, Peter Steinberg, and Staffan Kjelleberg PMCID: PMC2444038 Abundance of Early Functional HIV-Specific CD8+ T Cells Does Not Predict AIDS-Free Survival Time Ingrid M. M. Schellens, José A. M. Borghans, Christine A. Jansen, Iris M. De Cuyper, Ronald B. Geskus, Debbie van Baarle, and Frank Miedema PMCID: PMC2447878 A Cytoplasmic Domain Mutation in ClC-Kb Affects Long-Distance Communication Across the Membrane Gilbert Q. Martinez and Merritt Maduke PMCID: PMC2447174 CCR5Δ32 Genotypes in a German HIV-1 Seroconverter Cohort and Report of HIV-1 Infection in a CCR5Δ32 Homozygous Individual Djin-Ye Oh, Heiko Jessen, Claudia Kücherer, Konrad Neumann, Nari Oh, Gabriele Poggensee, Barbara Bartmeyer, Arne Jessen, Axel Pruss, Ralf R. Schumann, and Osamah Hamouda PMCID: PMC2453227 Hypoxia-Induced Retinal Angiogenesis in Zebrafish as a Model to Study Retinopathy Renhai Cao, Lasse Dahl Ejby Jensen, Iris Söll, Giselbert Hauptmann, and Yihai Cao PMCID: PMC2447178 Circadian Genes Are Expressed during Early Development in Xenopus laevis Kristen L. Curran, Silvia LaRue, Brittany Bronson, Jessica Solis, Aaron Trow, Nicole Sarver, and Haisun Zhu PMCID: PMC2518526 iTRAQ Analysis of Complex Proteome Alterations in 3xTgAD Alzheimer's Mice: Understanding the Interface between Physiology and Disease Bronwen Martin, Randall Brenneman, Kevin G. Becker, Marjan Gucek, Robert N. Cole, and Stuart Maudsley PMCID: PMC2453232 The Male Sex Pheromone of the Butterfly Bicyclus anynana: Towards an Evolutionary Analysis Caroline M. Nieberding, Helene de Vos, Maria V. Schneider, Jean-Marc Lassance, Natalia Estramil, Jimmy Andersson, Joakim Bång, Erik Hedenström, Christer Löfstedt, and Paul M. Brakefield PMCID: PMC2447158 Conservation of the S10-spc-α Locus within Otherwise Highly Plastic Genomes Provides Phylogenetic Insight into the Genus Leptospira Berta Victoria, Ahmed Ahmed, Richard L. Zuerner, Niyaz Ahmed, Dieter M. Bulach, Javier Quinteiro, and Rudy A. Hartskeerl PMCID: PMC2481283 Supernatant from Bifidobacterium Differentially Modulates Transduction Signaling Pathways for Biological Functions of Human Dendritic Cells Cyrille Hoarau, Laurence Martin, Delphine Faugaret, Christophe Baron, Audrey Dauba, Cécile Aubert-Jacquin, Florence Velge-Roussel, and Yvon Lebranchu PMCID: PMC2447180 Arterially Perfused Neurosphere-Derived Cells Distribute Outside the Ischemic Core in a Model of Transient Focal Ischemia and Reperfusion In Vitro Chiara Pastori, Laura Librizzi, Gian Luca Breschi, Cristina Regondi, Carolina Frassoni, Ferruccio Panzica, Simona Frigerio, Maurizio Gelati, Eugenio Parati, Maria Grazia De Simoni, and Marco de Curtis PMCID: PMC2453234 Expression Analysis of the NLRP Gene Family Suggests a Role in Human Preimplantation Development Pu Zhang, Morag Dixon, Marco Zucchelli, Fredwell Hambiliki, Lev Levkov, Outi Hovatta, and Juha Kere PMCID: PMC2447171 The Influence of Markov Decision Process Structure on the Possible Strategic Use of Working Memory and Episodic Memory Eric A. Zilli and Michael E. Hasselmo PMCID: PMC2447173 Universal Scaling in the Branching of the Tree of Life E. Alejandro Herrada, Claudio J. Tessone, Konstantin Klemm, Víctor M. Eguíluz, Emilio Hernández-García, and Carlos M. Duarte PMCID: PMC2447175 Regulation of the V-ATPase along the Endocytic Pathway Occurs through Reversible Subunit Association and Membrane Localization Céline Lafourcade, Komla Sobo, Sylvie Kieffer-Jaquinod, Jérome Garin, and F. Gisou van der Goot PMCID: PMC2447177 Impairment of Adolescent Hippocampal Plasticity in a Mouse Model for Alzheimer's Disease Precedes Disease Phenotype Daniela Hartl, Michael Rohe, Lei Mao, Matthias Staufenbiel, Claus Zabel, and Joachim Klose PMCID: PMC2447155 Brucellosis Vaccines: Assessment of Brucella melitensis Lipopolysaccharide Rough Mutants Defective in Core and O-Polysaccharide Synthesis and Export David González, María-Jesús Grilló, María-Jesús De Miguel, Tara Ali, Vilma Arce-Gorvel, Rose-May Delrue, Raquel Conde-Álvarez, Pilar Muñoz, Ignacio López-Goñi, Maite Iriarte, Clara-M. Marín, Andrej Weintraub, Göran Widmalm, Michel Zygmunt, Jean-Jacques Letesson, Jean-Pierre Gorvel, José-María Blasco, and Ignacio Moriyón PMCID: PMC2453230 Sample Size and Precision in NIH Peer Review David Kaplan, Nicola Lacetera, and Celia Kaplan PMCID: PMC2447157 Disturbed Clockwork Resetting in Sharp-1 and Sharp-2 Single and Double Mutant Mice Moritz J. Rossner, Henrik Oster, Sven P. Wichert, Lisa Reinecke, Michael C. Wehr, Johannes Reinecke, Gregor Eichele, Reshma Taneja, and Klaus-Armin Nave PMCID: PMC2447179 Cheating on the Edge Lee Alan Dugatkin, Aaron D. Dugatkin, Ronald M. Atlas, and Michael H. Perlin PMCID: PMC2453231 Altered Metabolism of Growth Hormone Receptor Mutant Mice: A Combined NMR Metabonomics and Microarray Study Horst Joachim Schirra, Cameron G. Anderson, William J. Wilson, Linda Kerr, David J. Craik, Michael J. Waters, and Agnieszka M. Lichanska PMCID: PMC2447874 Squalamine: An Appropriate Strategy against the Emergence of Multidrug Resistant Gram-Negative Bacteria? Chanaz Salmi, Celine Loncle, Nicolas Vidal, Yves Letourneux, Jacques Fantini, Marc Maresca, Nadira Taïeb, Jean-Marie Pagès, and Jean Michel Brunel PMCID: PMC2447875 Effect of Antihypertensive Therapy with Alpha Methyldopa on Levels of Angiogenic Factors in Pregnancies with Hypertensive Disorders Asma Khalil, Shanthi Muttukrishna, Kevin Harrington, and Eric Jauniaux PMCID: PMC2447877 Domain Organization of Long Signal Peptides of Single-Pass Integral Membrane Proteins Reveals Multiple Functional Capacity Jan A. Hiss, Eduard Resch, Alexander Schreiner, Michael Meissner, Anna Starzinski-Powitz, and Gisbert Schneider PMCID: PMC2447879 Seasonality of Influenza A(H3N2) Virus: A Hong Kong Perspective (1997–2006) Julian W. Tang, Karry L. K. Ngai, Wai Y. Lam, and Paul K. S. Chan PMCID: PMC2481298 Nod2 Mediates Susceptibility to Yersinia pseudotuberculosis in Mice Ulrich Meinzer, Sophie Esmiol-Welterlin, Frederick Barreau, Dominique Berrebi, Monique Dussaillant, Stephane Bonacorsi, Fabrice Chareyre, Michiko Niwa-Kawakita, Corinne Alberti, Ghislaine Sterkers, Claude Villard, Thecla Lesuffleur, Michel Peuchmaur, Michael Karin, Lars Eckmann, Marco Giovannini, Vincent Ollendorff, Hans Wolf-Watz, and Jean-Pierre Hugot PMCID: PMC2447872 Interaction between Purkinje Cells and Inhibitory Interneurons May Create Adjustable Output Waveforms to Generate Timed Cerebellar Output Simon Hong and Lance M. Optican PMCID: PMC2474676 Does Pathogen Spillover from Commercially Reared Bumble Bees Threaten Wild Pollinators? Michael C. Otterstatter and James D. Thomson PMCID: PMC2464710 Network Evolution of Body Plans Koichi Fujimoto, Shuji Ishihara, and Kunihiko Kaneko PMCID: PMC2464711 Effective Gene Therapy in a Mouse Model of Prion Diseases Karine Toupet, Valérie Compan, Carole Crozet, Chantal Mourton-Gilles, Nadine Mestre-Francés, Françoise Ibos, Pierre Corbeau, Jean-Michel Verdier, and Véronique Perrier PMCID: PMC2453229 The Role of Input Noise in Transcriptional Regulation Gašper Tkačik, Thomas Gregor, and William Bialek PMCID: PMC2475664 Effect of Transmission Setting and Mixed Species Infections on Clinical Measures of Malaria in Malawi Marian C. Bruce, Allan Macheso, Louise A. Kelly-Hope, Standwell Nkhoma, Alex McConnachie, and Malcolm E. Molyneux PMCID: PMC2467490 Bovine Tuberculosis in Doñana Biosphere Reserve: The Role of Wild Ungulates as Disease Reservoirs in the Last Iberian Lynx Strongholds Christian Gortázar, María José Torres, Joaquín Vicente, Pelayo Acevedo, Manuel Reglero, José de la Fuente, Juan José Negro, and Javier Aznar-Martín PMCID: PMC2464716 Neutrality and the Response of Rare Species to Environmental Variance Lisandro Benedetti-Cecchi, Iacopo Bertocci, Stefano Vaselli, Elena Maggi, and Fabio Bulleri PMCID: PMC2481292 Measuring Co-Authorship and Networking-Adjusted Scientific Impact John P. A. Ioannidis PMCID: PMC2464713 Deleted in Liver Cancer 1 (DLC1) Negatively Regulates Rho/ROCK/MLC Pathway in Hepatocellular Carcinoma Carmen Chak-Lui Wong, Chun-Ming Wong, Frankie Chi-Fat Ko, Lo-Kong Chan, Yick-Pang Ching, Judy Wai-Ping Yam, and Irene Oi-lin Ng PMCID: PMC2464714 Comparative 3'UTR Analysis Allows Identification of Regulatory Clusters that Drive Eph/ephrin Expression in Cancer Cell Lines Jennifer Winter, Stefan Roepcke, Sven Krause, Eva-Christina Müller, Albrecht Otto, Martin Vingron, and Susann Schweiger PMCID: PMC2474680 Multiple Functions for ORF75c in Murid Herpesvirus-4 Infection Miguel Gaspar, Michael B. Gill, Jens-Bernhard Lösing, Janet S. May, and Philip G. Stevenson PMCID: PMC2464709 Modulation of Serotonin Transporter Function during Fetal Development Causes Dilated Heart Cardiomyopathy and Lifelong Behavioral Abnormalities Cornelle W. Noorlander, Frederique F. T. Ververs, Peter G. J. Nikkels, Cees J. A. van Echteld, Gerard H. A. Visser, and Marten P. Smidt PMCID: PMC2518512 Not All Missed Doses Are the Same: Sustained NNRTI Treatment Interruptions Predict HIV Rebound at Low-to-Moderate Adherence Levels Jean-Jacques Parienti, Moupali Das-Douglas, Véronique Massari, David Guzman, Steven G. Deeks, Renaud Verdon, and David R. Bangsberg PMCID: PMC2467488 A Model for the Detection of Moving Targets in Visual Clutter Inspired by Insect Physiology Steven D. Wiederman, Patrick A. Shoemaker, and David C. O'Carroll PMCID: PMC2464731 Remodeling of the Streptococcus agalactiae Transcriptome in Response to Growth Temperature Laurent Mereghetti, Izabela Sitkiewicz, Nicole M. Green, and James M. Musser PMCID: PMC2464734 Regulating Factors of PrPres Glycosylation in Creutzfeldt-Jakob Disease - Implications for the Dissemination and the Diagnosis of Human Prion Strains Etienne Levavasseur, Isabelle Laffont-Proust, Émilie Morain, Baptiste A. Faucheux, Nicolas Privat, Katell Peoc'h, Véronique Sazdovitch, Jean-Philippe Brandel, Jean-Jacques Hauw, and Stéphane Haïk PMCID: PMC2464735 Reversible Disassembly of the Actin Cytoskeleton Improves the Survival Rate and Developmental Competence of Cryopreserved Mouse Oocytes Basarab G. Hosu, Steven F. Mullen, John K. Critser, and Gabor Forgacs PMCID: PMC2467491 Adenosine Deaminase Activity Is a Sensitive Marker for the Diagnosis of Tuberculous Pleuritis in Patients with Very Low CD4 Counts Kamaldeen Baba, Anwar A. Hoosen, Nina Langeland, and Anne M. Dyrhol-Riise PMCID: PMC2464737 A Patient-Specific in silico Model of Inflammation and Healing Tested in Acute Vocal Fold Injury Nicole Y. K. Li, Katherine Verdolini, Gilles Clermont, Qi Mi, Elaine N. Rubinstein, Patricia A. Hebda, and Yoram Vodovotz PMCID: PMC2481293 Extra-Nuclear Signaling of Progesterone Receptor to Breast Cancer Cell Movement and Invasion through the Actin Cytoskeleton Xiao-Dong Fu, Maria S. Giretti, Chiara Baldacci, Silvia Garibaldi, Marina Flamini, Angel Matias Sanchez, Angiolo Gadducci, Andrea R. Genazzani, and Tommaso Simoncini PMCID: PMC2464736 Lower Miocene Stratigraphy along the Panama Canal and Its Bearing on the Central American Peninsula Michael Xavier Kirby, Douglas S. Jones, and Bruce J. MacFadden PMCID: PMC2464738 Conserving, Distributing and Managing Genetically Modified Mouse Lines by Sperm Cryopreservation G. Charles Ostermeier, Michael V. Wiles, Jane S. Farley, and Robert A. Taft PMCID: PMC2453316 The PlcR Virulence Regulon of Bacillus cereus Michel Gohar, Karoline Faegri, Stéphane Perchat, Solveig Ravnum, Ole Andreas Økstad, Myriam Gominet, Anne-Brit Kolstø, and Didier Lereclus PMCID: PMC2464732 Postglacial Colonisation Patterns and the Role of Isolation and Expansion in Driving Diversification in a Passerine Bird Bengt Hansson, Dennis Hasselquist, Maja Tarka, Pavel Zehtindjiev, and Staffan Bensch PMCID: PMC2467487 Matrix Development in Self-Assembly of Articular Cartilage Gidon Ofek, Christopher M. Revell, Jerry C. Hu, David D. Allison, K. Jane Grande-Allen, and Kyriacos A. Athanasiou PMCID: PMC2464773 Demonstration of a Novel HIV-1 Restriction Phenotype from a Human T Cell Line Yanxing Han, Xiaojun Wang, Ying Dang, and Yong-Hui Zheng PMCID: PMC2464712 Distinct Neurocognitive Strategies for Comprehensions of Human and Artificial Intelligence Jianqiao Ge and Shihui Han PMCID: PMC2453324 Diurnal and Circadian Rhythms in the Tomato Transcriptome and Their Modulation by Cryptochrome Photoreceptors Paolo Facella, Loredana Lopez, Fabrizio Carbone, David W. Galbraith, Giovanni Giuliano, and Gaetano Perrotta PMCID: PMC2474677 Evolutionary Patterns in the Sequence and Structure of Transfer RNA: A Window into Early Translation and the Genetic Code Feng-Jie Sun and Gustavo Caetano-Anollés PMCID: PMC2474678 Establishment of Rat Embryonic Stem Cells and Making of Chimera Rats Shinobu Ueda, Masaki Kawamata, Takumi Teratani, Taku Shimizu, Yoshitaka Tamai, Hiromasa Ogawa, Katsuyuki Hayashi, Hiroyuki Tsuda, and Takahiro Ochiya PMCID: PMC2483735 ATP Release from Vascular Endothelia Occurs Across Cx43 Hemichannels and Is Attenuated during Hypoxia Marion Faigle, Jessica Seessle, Stephanie Zug, Karim C. El Kasmi, and Holger K. Eltzschig PMCID: PMC2474679 Multiple Multilocus DNA Barcodes from the Plastid Genome Discriminate Plant Species Equally Well Aron J. Fazekas, Kevin S. Burgess, Prasad R. Kesanakurti, Sean W. Graham, Steven G. Newmaster, Brian C. Husband, Diana M. Percy, Mehrdad Hajibabaei, and Spencer C. H. Barrett PMCID: PMC2475660 Poly A- Transcripts Expressed in HeLa Cells Qingfa Wu, Yeong C. Kim, Jian Lu, Zhenyu Xuan, Jun Chen, Yonglan Zheng, Tom Zhou, Michael Q. Zhang, Chung-I Wu, and San Ming Wang PMCID: PMC2481391 Dopamine Inhibits Mitochondrial Motility in Hippocampal Neurons Sigeng Chen, Geoffrey C. Owens, and David B. Edelman PMCID: PMC2467486 Prevalence and Infection Load Dynamics of Rickettsia felis in Actively Feeding Cat Fleas Kathryn E. Reif, Rhett W. Stout, Gretchen C. Henry, Lane D. Foil, and Kevin R. Macaluso PMCID: PMC2474969 Identify Alternative Splicing Events Based on Position-Specific Evolutionary Conservation Liang Chen and Sika Zheng PMCID: PMC2467489 Evolution of Skull and Mandible Shape in Cats (Carnivora: Felidae) Per Christiansen PMCID: PMC2475670 Dinosaurian Soft Tissues Interpreted as Bacterial Biofilms Thomas G. Kaye, Gary Gaugler, and Zbigniew Sawlowicz PMCID: PMC2483347 Transmembrane and Ubiquitin-Like Domain-Containing Protein 1 (Tmub1/HOPS) Facilitates Surface Expression of GluR2-Containing AMPA Receptors Hyunjeong Yang, Hiroshi Takagi, Yoshiyuki Konishi, Hiroshi Ageta, Koji Ikegami, Ikuko Yao, Showbu Sato, Ken Hatanaka, Kaoru Inokuchi, Dae-Hyun Seog, and Mitsutoshi Setou PMCID: PMC2474703 Does an Insect's Unconditioned Response to Sucrose Reveal Expectations of Reward? Mariana Gil, Randolf Menzel, and Rodrigo J. De Marco PMCID: PMC2467492 The Murid Herpesvirus-4 gL Regulates an Entry-Associated Conformation Change in gH Laurent Gillet, Susanna Colaco, and Philip G. Stevenson PMCID: PMC2481400 Conserved Secondary Structures in Aspergillus Abigail Manson McGuire and James E. Galagan PMCID: PMC2467506 An Optimized Chloroplast DNA Extraction Protocol for Grasses (Poaceae) Proves Suitable for Whole Plastid Genome Sequencing and SNP Detection Kerstin Diekmann, Trevor R. Hodkinson, Evelyn Fricke, and Susanne Barth PMCID: PMC2474675 Role of the Transcriptional Corepressor Bcor in Embryonic Stem Cell Differentiation and Early Embryonic Development Joseph Alan Wamstad, Connie Marie Corcoran, Anne Marjorie Keating, and Vivian J. Bardwell PMCID: PMC2535898 Design and Construction of a Double Inversion Recombination Switch for Heritable Sequential Genetic Memory Timothy S. Ham, Sung K. Lee, Jay D. Keasling, and Adam P. Arkin PMCID: PMC2481393 Polymorphisms in the Estrogen Receptor 1 and Vitamin C and Matrix Metalloproteinase Gene Families Are Associated with Susceptibility to Lymphoma Christine F. Skibola, Paige M. Bracci, Eran Halperin, Alexandra Nieters, Alan Hubbard, Randi A. Paynter, Danica R. Skibola, Luz Agana, Nikolaus Becker, Patrick Tressler, Matthew S. Forrest, Sriram Sankararaman, Lucia Conde, Elizabeth A. Holly, and Martyn T. Smith PMCID: PMC2474696 High-Resolution, In Vivo Magnetic Resonance Imaging of Drosophila at 18.8 Tesla Brian Null, Corey W. Liu, Maj Hedehus, Steven Conolly, and Ronald W. Davis PMCID: PMC2474967 Sequence Relationships among C. elegans, D. melanogaster and Human microRNAs Highlight the Extensive Conservation of microRNAs in Biology Carolina Ibáñez-Ventoso, Mehul Vora, and Monica Driscoll PMCID: PMC2486268 Mdm2 Induces Mono-Ubiquitination of FOXO4 Arjan B. Brenkman, Peter L. J. de Keizer, Niels J. F. van den Broek, A. G. Jochemsen, and Boudewijn M. Th. Burgering PMCID: PMC2475507 Evolutionary Emergence of microRNAs in Human Embryonic Stem Cells Hong Cao, Chao-shun Yang, and Tariq M. Rana PMCID: PMC2474702 Quantitative Image Analysis Reveals Distinct Structural Transitions during Aging in Caenorhabditis elegans Tissues Josiah Johnston, Wendy B. Iser, David K. Chow, Ilya G. Goldberg, and Catherine A. Wolkow PMCID: PMC2483734 Exploring Proteins in Anopheles gambiae Male and Female Antennae through MALDI Mass Spectrometry Profiling Francesca R. Dani, Simona Francese, Guido Mastrobuoni, Antonio Felicioli, Beniamino Caputo, Frederic Simard, Giuseppe Pieraccini, Gloriano Moneti, Mario Coluzzi, Alessandra della Torre, and Stefano Turillazzi PMCID: PMC2474704 Notch and Presenilin Regulate Cellular Expansion and Cytokine Secretion but Cannot Instruct Th1/Th2 Fate Acquisition Chin-Tong Ong, John R. Sedy, Kenneth M. Murphy, and Raphael Kopan PMCID: PMC2474705 Streptococcus iniae M-Like Protein Contributes to Virulence in Fish and Is a Target for Live Attenuated Vaccine Development Jeffrey B. Locke, Ramy K. Aziz, Mike R. Vicknair, Victor Nizet, and John T. Buchanan PMCID: PMC2483786 Effects of Algal Diversity on the Production of Biomass in Homogeneous and Heterogeneous Nutrient Environments: A Microcosm Experiment Jerome J. Weis, Daniel S. Madrigal, and Bradley J. Cardinale PMCID: PMC2467485 SdiA, an N-Acylhomoserine Lactone Receptor, Becomes Active during the Transit of Salmonella enterica through the Gastrointestinal Tract of Turtles Jenee N. Smith, Jessica L. Dyszel, Jitesh A. Soares, Craig D. Ellermeier, Craig Altier, Sara D. Lawhon, L. Garry Adams, Vjollca Konjufca, Roy Curtiss, III, James M. Slauch, and Brian M. M. Ahmer PMCID: PMC2475663 Increased Resting-State Functional Connectivity in Obese Adolescents; A Magnetoencephalographic Pilot Study Kim T. E. Olde Dubbelink, Abraham Felius, Jeroen P. A. Verbunt, Bob W. van Dijk, Henk W. Berendse, Cornelis J. Stam, and Henriette A. Delemarre-van de Waal PMCID: PMC2474698 Quality of Pharmaceutical Industry Press Releases Based on Original Research Bindee Kuriya, Elana C. Schneid, and Chaim M. Bell PMCID: PMC2518517 Human Microglial Cells Synthesize Albumin in Brain Sung-Min Ahn, Kyunghee Byun, Kun Cho, Jin Young Kim, Jong Shin Yoo, Deokhoon Kim, Sun Ha Paek, Seung U. Kim, Richard J. Simpson, and Bonghee Lee PMCID: PMC2483733 Protection Induced by Plasmodium falciparum MSP142 Is Strain-Specific, Antigen and Adjuvant Dependent, and Correlates with Antibody Responses Jeffrey A. Lyon, Evelina Angov, Michael P. Fay, JoAnn S. Sullivan, Autumn S. Girourd, Sally J. Robinson, Elke S. Bergmann-Leitner, Elizabeth H. Duncan, Christian A. Darko, William E. Collins, Carole A. Long, and John W. Barnwell PMCID: PMC2474699 The N-Terminal Domain of the Drosophila Retinoblastoma Protein Rbf1 Interacts with ORC and Associates with Chromatin in an E2F Independent Manner Joseph Ahlander, Xiao-Bo Chen, and Giovanni Bosco PMCID: PMC2475671 From Plants to Birds: Higher Avian Predation Rates in Trees Responding to Insect Herbivory Elina Mäntylä, Giorgio A. Alessio, James D. Blande, Juha Heijari, Jarmo K. Holopainen, Toni Laaksonen, Panu Piirtola, and Tero Klemola PMCID: PMC2475509 Effect of Attenuation of Treg during BCG Immunization on Anti-Mycobacterial Th1 Responses and Protection against Mycobacterium tuberculosis Barbara Jaron, Eddie Maranghi, Claude Leclerc, and Laleh Majlessi PMCID: PMC2475666 In Vitro Analysis of Integrated Global High-Resolution DNA Methylation Profiling with Genomic Imbalance and Gene Expression in Osteosarcoma Bekim Sadikovic, Maisa Yoshimoto, Khaldoun Al-Romaih, Georges Maire, Maria Zielenska, and Jeremy A. Squire PMCID: PMC2515339 Clustering of Drosophila melanogaster Immune Genes in Interplay with Recombination Rate K. Mathias Wegner PMCID: PMC2475659 Comparative Analysis of Human Gut Microbiota by Barcoded Pyrosequencing Anders F. Andersson, Mathilda Lindberg, Hedvig Jakobsson, Fredrik Bäckhed, Pål Nyrén, and Lars Engstrand PMCID: PMC2475661 Temperature-Dependent Sex Determination in Fish Revisited: Prevalence, a Single Sex Ratio Response Pattern, and Possible Effects of Climate Change Natalia Ospina-Álvarez and Francesc Piferrer PMCID: PMC2481392 Climate Change and Local Public Health in the United States: Preparedness, Programs and Perceptions of Local Public Health Department Directors Edward W. Maibach, Amy Chadwick, Dennis McBride, Michelle Chuk, Kristie L. Ebi, and John Balbus PMCID: PMC2474970 Potassium Channel and NKCC Cotransporter Involvement in Ocular Refractive Control Mechanisms Sheila G. Crewther, Melanie J. Murphy, and David P. Crewther PMCID: PMC2481396 Social Competitiveness and Plasticity of Neuroendocrine Function in Old Age: Influence of Neonatal Novelty Exposure and Maternal Care Reliability Katherine G. Akers, Zhen Yang, Dominic P. DelVecchio, Bethany C. Reeb, Russell D. Romeo, Bruce S. McEwen, and Akaysha C. Tang PMCID: PMC2475497 Retinoic Acid Promotes the Generation of Pancreatic Endocrine Progenitor Cells and Their Further Differentiation into β-Cells Maria Öström, Kelly A. Loffler, Sara Edfalk, Lars Selander, Ulf Dahl, Camillo Ricordi, Jongmin Jeon, Mayrin Correa-Medina, Juan Diez, and Helena Edlund PMCID: PMC2475501 Mitochondrial Dysfunction Increases Oxidative Stress and Decreases Chronological Life Span in Fission Yeast Alice Zuin, Natalia Gabrielli, Isabel A. Calvo, Sarela García-Santamarina, Kwang-Lae Hoe, Dong Uk Kim, Han-Oh Park, Jacqueline Hayles, José Ayté, and Elena Hidalgo PMCID: PMC2475502 Classification and Identification of Bacteria by Mass Spectrometry and Computational Analysis Sascha Sauer, Anja Freiwald, Thomas Maier, Michael Kube, Richard Reinhardt, Markus Kostrzewa, and Klaus Geider PMCID: PMC2475672 Bid Participates in Genotoxic Drug-Induced Apoptosis of HeLa Cells and Is Essential for Death Receptor Ligands' Apoptotic and Synergistic Effects Barbara Köhler, Sergio Anguissola, Caoimhin G. Concannon, Markus Rehm, Donat Kögel, and Jochen H. M. Prehn PMCID: PMC2481399 Zebrafish Endzone Regulates Neural Crest-Derived Chromatophore Differentiation and Morphology Brigitte L. Arduini, Glen R. Gallagher, and Paul D. Henion PMCID: PMC2483736 A National Survey of Musculoskeletal Impairment in Rwanda: Prevalence, Causes and Service Implications Oluwarantimi Atijosan, Dorothea Rischewski, Victoria Simms, Hannah Kuper, Bonaventure Linganwa, Assuman Nuhi, Allen Foster, and Chris Lavy PMCID: PMC2483936 Corrections Correction: PINK1 Is Necessary for Long Term Survival and Mitochondrial Function in Human Dopaminergic Neurons Alison Wood-Kaczmar, Sonia Gandhi, Zhi Yao, Andrey Y. Abramov, Erik A. Miljan, Gregory Keen, Lee Stanyer, Iain Hargreaves, Kristina Klupsch, Emma Deas, Julian Downward, Louise Mansfield, Parmjit Jat, Joanne Taylor, Simon Heales, Michael R. Duchen, David Latchman, Sarah J. Tabrizi, and Nicholas W. Wood PMCID: PMC2651652 Corrects: Alison Wood-Kaczmar, et al. PINK1 Is Necessary for Long Term Survival and Mitochondrial Function in Human Dopaminergic Neurons. PLoS ONE. 2008; 3(6): e2455. Correction: A Unique Carrier for Delivery of Therapeutic Compounds beyond the Blood-Brain Barrier Delara Karkan, Cheryl Pfeifer, Timothy Z. Vitalis, Gavin Arthur, Maki Ujiie, Qingqi Chen, Sam Tsai, Gerrasimo Koliatis, Reinhard Gabathuler, and Wilfred A. Jefferies PMCID: PMC2645281 Corrects: Delara Karkan, et al. A Unique Carrier for Delivery of Therapeutic Compounds beyond the Blood-Brain Barrier. PLoS ONE. 2008; 3(6): e2469. Correction: An Accurate Definition of the Status of Inactive Hepatitis B Virus Carrier by a Combination of Biomarkers (FibroTest-ActiTest) and Viral Load Yen Ngo, Yves Benhamou, Vincent Thibault, Patrick Ingiliz, Mona Munteanu, Pascal Lebray, Dominique Thabut, Rachel Morra, Djamila Messous, Frederic Charlotte, Françoise Imbert-Bismut, Dominique Bonnefont-Rousselot, Joseph Moussalli, Vlad Ratziu, and Thierry Poynard PMCID: PMC2651651 Corrects: Yen Ngo, et al. An Accurate Definition of the Status of Inactive Hepatitis B Virus Carrier by a Combination of Biomarkers (FibroTest-ActiTest) and Viral Load. PLoS ONE. 2008; 3(7): e2573. Correction: A Unique Carrier for Delivery of Therapeutic Compounds beyond the Blood-Brain Barrier Delara Karkan, Cheryl Pfeifer, Timothy Z. Vitalis, Gavin Arthur, Maki Ujiie, Qingqi Chen, Sam Tsai, Gerrasimo Koliatis, Reinhard Gabathuler, and Wilfred A. Jefferies PMCID: PMC2645282 Corrects: Delara Karkan, et al. A Unique Carrier for Delivery of Therapeutic Compounds beyond the Blood-Brain Barrier. PLoS ONE. 2008; 3(6): e2469. Correction: Inducible Ablation of Melanopsin-Expressing Retinal Ganglion Cells Reveals Their Central Role in Non-Image Forming Visual Responses Megumi Hatori, Hiep Le, Christopher Vollmers, Sheena Racheal Keding, Nobushige Tanaka, Thorsten Buch, Ari Waisman, Christian Schmedt, Timothy Jegla, and Satchidananda Panda PMCID: PMC2651654 Corrects: Megumi Hatori, et al. Inducible Ablation of Melanopsin-Expressing Retinal Ganglion Cells Reveals Their Central Role in Non-Image Forming Visual Responses. PLoS ONE. 2008; 3(6): e2451. Correction: An Automated Phylogenetic Tree-Based Small Subunit rRNA Taxonomy and Alignment Pipeline (STAP) Dongying Wu, Amber Hartman, Naomi Ward, and Jonathan A. Eisen PMCID: PMC2645283 Corrects: Dongying Wu, et al. An Automated Phylogenetic Tree-Based Small Subunit rRNA Taxonomy and Alignment Pipeline (STAP). PLoS ONE. 2008; 3(7): e2566. Correction: Iron(III)-Salophene: An Organometallic Compound with Selective Cytotoxic and Anti-Proliferative Properties in Platinum-Resistant Ovarian Cancer Cells Thilo S. Lange, Kyu Kwang Kim, Rakesh K. Singh, Robert M. Strongin, Carolyn K. McCourt, and Laurent Brard PMCID: PMC2655736 Corrects: Thilo S. Lange, et al. Iron(III)-Salophene: An Organometallic Compound with Selective Cytotoxic and Anti-Proliferative Properties in Platinum-Resistant Ovarian Cancer Cells. PLoS ONE. 2008; 3(5): e2303. Correction: Cell Encapsulation in Sub-mm Sized Gel Modules Using Replica Molding Alison P. McGuigan, Derek A. Bruzewicz, Ana Glavan, Manish J. Butte, and George M. Whitesides PMCID: PMC2651646 Corrects: Alison P. McGuigan, et al. Cell Encapsulation in Sub-mm Sized Gel Modules Using Replica Molding. PLoS ONE. 2008; 3(5): e2258. Correction: Inducible Ablation of Melanopsin-Expressing Retinal Ganglion Cells Reveals Their Central Role in Non-Image Forming Visual Responses Megumi Hatori, Hiep Le, Christopher Vollmers, Sheena Racheal Keding, Nobushige Tanaka, Thorsten Buch, Ari Waisman, Christian Schmedt, Timothy Jegla, and Satchidananda Panda PMCID: PMC2651655 Corrects: Megumi Hatori, et al. Inducible Ablation of Melanopsin-Expressing Retinal Ganglion Cells Reveals Their Central Role in Non-Image Forming Visual Responses. PLoS ONE. 2008; 3(6): e2451. Correction: Systemic Complement Activation in Age-Related Macular Degeneration Hendrik P. N. Scholl, Peter Charbel Issa, Maja Walier, Stefanie Janzer, Beatrix Pollok-Kopp, Florian Börncke, Lars G. Fritsche, Ngaihang V. Chong, Rolf Fimmers, Thomas Wienker, Frank G. Holz, Bernhard H. F. Weber, and Martin Oppermann PMCID: PMC2651648 Corrects: Hendrik P. N. Scholl, et al. Systemic Complement Activation in Age-Related Macular Degeneration. PLoS ONE. 2008; 3(7): e2593. Correction: Systemic Complement Activation in Age-Related Macular Degeneration Hendrik P. N. Scholl, Peter Charbel Issa, Maja Walier, Stefanie Janzer, Beatrix Pollok-Kopp, Florian Börncke, Lars G. Fritsche, Ngaihang V. Chong, Rolf Fimmers, Thomas Wienker, Frank G. Holz, Bernhard H. F. Weber, and Martin Oppermann PMCID: PMC2656691 Corrects: Hendrik P. N. Scholl, et al. Systemic Complement Activation in Age-Related Macular Degeneration. PLoS ONE. 2008; 3(7): e2593. Correction: A Novel Strategy Involved in Anti-Oxidative Defense: The Conversion of NADH into NADPH by a Metabolic Network Ranji Singh, Joseph Lemire, Ryan J. Mailloux, and Vasu D. Appanna PMCID: PMC2651653 Corrects: Ranji Singh, et al. A Novel Strategy Involved Anti-Oxidative Defense: The Conversion of NADH into NADPH by a Metabolic Network. PLoS ONE. 2008; 3(7): e2682. Correction: Use of Evidence-Based Practices in Pregnancy and Childbirth: South East Asia Optimising
Reproductive and Child Health in Developing Countries Project The SEA-ORCHID Study Group PMCID: PMC2645284 Corrects: . Use of Evidence-Based Practices in Pregnancy and Childbirth: South East Asia Optimising Reproductive and Child Health in Developing Countries Project. PLoS ONE. 2008; 3(7): e2646. |
