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Volume 10(11);  November 2001
Articles
Electrostatic contributions to protein–protein interactions: Fast energetic filters for docking and their physical basis
Raquel Norel, Felix Sheinerman, Donald Petrey, and Barry Honig
Protein Sci. 2001 November; 10(11): 2147–2161.
PMCID: PMC2374075
Reconstitution of a native-like SH2 domain from disordered peptide fragments examined by multidimensional heteronuclear NMR
Deanna Dahlke Ojennus, Mark R. Fleissner, and Deborah S. Wuttke
Protein Sci. 2001 November; 10(11): 2162–2175.
PMCID: PMC2374061
The crystal structures of glutathione S-transferases isozymes 1–3 and 1–4 from Anopheles dirus species B
Aaron J. Oakley, Thasaneeya Harnnoi, Rungrutai Udomsinprasert, Kanya Jirajaroenrat, Albert J. Ketterman, and Matthew C.J. Wilce
Protein Sci. 2001 November; 10(11): 2176–2185.
PMCID: PMC2374065
Influence of a sulfhydryl cross-link across the allosteric-site interface of E. coli phosphofructokinase
Jason L. Johnson, Mauricio D. Lasagna, and Gregory D. Reinhart
Protein Sci. 2001 November; 10(11): 2186–2194.
PMCID: PMC2374071
Solvent-induced collapse of α-synuclein and acid-denatured cytochrome c
Artemiza S. Morar, Alina Olteanu, Gregory B. Young, and Gary J. Pielak
Protein Sci. 2001 November; 10(11): 2195–2199.
PMCID: PMC2374057
Structural features underlying selective inhibition of protein kinase CK2 by ATP site-directed tetrabromo-2-benzotriazole
Roberto Battistutta, Erika De Moliner, Stefania Sarno, Giuseppe Zanotti, and Lorenzo A. Pinna
Protein Sci. 2001 November; 10(11): 2200–2206.
PMCID: PMC2374052
Characterization of ostrich (Struthio camelus) β-microseminoprotein (MSP): Ideication of homologous sequences in EST databases and analysis of their evolution during speciation
Claude Lazure, Michéle Villemure, Dany Gauthier, Ryno J. Naudé, and Majambu Mbikay
Protein Sci. 2001 November; 10(11): 2207–2218.
PMCID: PMC2374068
Peptide-plane flipping in proteins
Steven Hayward
Protein Sci. 2001 November; 10(11): 2219–2227.
PMCID: PMC2374056
Key interactions in the immunoglobulin-like structure of apo-neocarzinostatin: Evidence from nuclear magnetic resonance relaxation data and molecular dynamics simulations
Nadia Izadi-Pruneyre, Éric Quiniou, Yves Blouquit, Javier Perez, Philippe Minard, Michel Desmadril, Joël Mispelter, and Élisabeth Adjadj
Protein Sci. 2001 November; 10(11): 2228–2240.
PMCID: PMC2374070
Structure of the transmembrane region of the M2 protein H+ channel
Junfeng Wang, Sanguk Kim, Frank Kovacs, and Timothy A. Cross
Protein Sci. 2001 November; 10(11): 2241–2250.
PMCID: PMC2374074
Ideication of disulfide-linked peptides by isotope profiles produced by peptic digestion of proteins in 50% 18O water
Tristan P. Wallis, James J. Pitt, and Jeffrey J. Gorman
Protein Sci. 2001 November; 10(11): 2251–2271.
PMCID: PMC2374058
E. coli methionine sulfoxide reductase with a truncated N terminus or C terminus, or both, retains the ability to reduce methionine sulfoxide
Sandrine Boschi-Muller, Saïd Azza, and Guy Branlant
Protein Sci. 2001 November; 10(11): 2272–2279.
PMCID: PMC2374066
Proteins of circularly permuted sequence present within the same organism: The major serine proteinase inhibitor from Capsicum annuum seeds
Nikolinka Antcheva, Alessandro Pintar, András Patthy, András Simoncsits, Endre Barta, Bojidar Tchorbanov, and Sándor Pongor
Protein Sci. 2001 November; 10(11): 2280–2290.
PMCID: PMC2374053
Insights into the alkaline transformation of ferricytochrome c from 1H NMR studies in 30% acetonitrile–water
Sivashankar G. Sivakolundu and Patricia Ann Mabrouk
Protein Sci. 2001 November; 10(11): 2291–2300.
PMCID: PMC2374059
Role of conserved residues in structure and stability: Tryptophans of human serum retinol-binding protein, a model for the lipocalin superfamily
Lesley H. Greene, Evangelia D. Chrysina, Laurence I. Irons, Anastassios C. Papageorgiou, K. Ravi Acharya, and Keith Brew
Protein Sci. 2001 November; 10(11): 2301–2316.
PMCID: PMC2374051
Implications of secondary structure prediction and amino acid sequence comparison of class I and class II phosphoribosyl diphosphate synthases on catalysis, regulation, and quaternary structure
Britta N. Krath and Bjarne Hove-Jensen
Protein Sci. 2001 November; 10(11): 2317–2324.
PMCID: PMC2374067
Salt-dependent monomer–dimer equilibrium of bovine β-lactoglobulin at pH 3
Kazumasa Sakurai, Motohisa Oobatake, and Yuji Goto
Protein Sci. 2001 November; 10(11): 2325–2335.
PMCID: PMC2374064
Structural comparison of recombinant human macrophage colony stimulating factor β and a partially reduced derivative using hydrogen deuterium exchange and electrospray ionization mass spectrometry
Y. Heidi Zhang, Xuguang Yan, Claudia S. Maier, Michael I. Schimerlik, and Max L. Deinzer
Protein Sci. 2001 November; 10(11): 2336–2345.
PMCID: PMC2374063
Chaperone-like activity of peptidyl-prolyl cis-trans isomerase during creatine kinase refolding
Wen-Bin Ou, Wei Luo, Yong-Doo Park, and Hai-Meng Zhou
Protein Sci. 2001 November; 10(11): 2346–2353.
PMCID: PMC2374073
Pcons: A neural-network–based consensus predictor that improves fold recognition
Jesper Lundström, Leszek Rychlewski, Janusz Bujnicki, and Arne Elofsson
Protein Sci. 2001 November; 10(11): 2354–2362.
PMCID: PMC2374055
Native-state conformational dynamics of GART: A regulatory pH-dependent coil–helix transition examined by electrostatic calculations
Dimitrios Morikis, Adrian H. Elcock, Patricia A. Jennings, and J. Andrew McCammon
Protein Sci. 2001 November; 10(11): 2363–2378.
PMCID: PMC2374060
Proton transfer dynamics of GART: The pH-dependent catalytic mechanism examined by electrostatic calculations
Dimitrios Morikis, Adrian H. Elcock, Patricia A. Jennings, and J. Andrew McCammon
Protein Sci. 2001 November; 10(11): 2379–2392.
PMCID: PMC2374072
Distance mapping of protein-binding sites using spin-labeled oligosaccharide ligands
Nitin U. Jain, Andre Venot, Kimiko Umemoto, Hakon Leffler, and James H. Prestegard
Protein Sci. 2001 November; 10(11): 2393–2400.
PMCID: PMC2374062
High and low oxygen affinity conformations of T state hemoglobin
Stefano Bruno, Maria Bonaccio, Stefano Bettati, Claudio Rivetti, Cristiano Viappiani, Stefania Abbruzzetti, and Andrea Mozzarelli
Protein Sci. 2001 November; 10(11): 2401–2407.
PMCID: PMC2374069
For the Record
Macromolecular organization of the Yersinia pestis capsular F1 antigen: Insights from time-of-flight mass spectrometry
Mark A. Tito, Julie Miller, Kate F. Griffin, E. Diane Williamson, Richard W. Titball, and Carol V. Robinson
Protein Sci. 2001 November; 10(11): 2408–2413.
PMCID: PMC2374054
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