| | This journal provides immediate access to some articles. Review 3D domain swapping: As domains continue to swap Yanshun Liu and David Eisenberg PMCID: PMC2373619 Articles Epitope mapping of a monoclonal antibody against human thrombin by H/D-exchange mass spectrometry reveals selection of a diverse sequence in a highly conserved protein Abel Baerga-Ortiz, Carrie A. Hughes, Jeffrey G. Mandell, and Elizabeth A. Komives PMCID: PMC2373625 Electrostatic properties of the anion selective porin Omp32 from Delftia acidovorans and of the arginine cluster of bacterial porins Ulrich Zachariae, Assen Koumanov, Harald Engelhardt, and Andrey Karshikoff PMCID: PMC2373638 Conformational changes in chemically modified Escherichia coli thioredoxin monitored by H/D exchange and electrospray ionization mass spectrometry Moo-Young Kim, Claudia S. Maier, Donald J. Reed, and Max L. Deinzer PMCID: PMC2373629 Towards a general model for protein–substrate stereoselectivity Vidyasankar Sundaresan and Ravinder Abrol PMCID: PMC2373627 Structural features of interferon-γ aggregation revealed by hydrogen exchange Scott A. Tobler and Erik J. Fernandez PMCID: PMC2373637 Probing protein conformation with a minimal photochemical reagent Patricio O. Craig, Daniela B. Ureta, and José M. Delfino PMCID: PMC2373615 Conformational and thermodynamic properties of peptide binding to the human S100P protein Alexey V. Gribenko, Mercedes Guzmán-Casado, Maria M. Lopez, and George I. Makhatadze PMCID: PMC2373636 Control of the allosteric equilibrium of hemoglobin by cross-linking agents Michael C. Marden, Marion Cabanes-Macheteau, Alexandru Babes, Laurent Kiger, Nathalie Griffon, Claude Poyart, Telih Boyiri, Martin K. Safo, and Donald J. Abraham PMCID: PMC2373633 Product-conformation-driven ligation of peptides by V8 protease Sonati Srinivasulu and A. Seetharama Acharya PMCID: PMC2373616 Protein–protein docking with multiple residue conformations and residue substitutions David M. Lorber, Maria K. Udo, and Brian K. Shoichet PMCID: PMC2373613 The crystal structure of hypothetical protein MTH1491 from Methanobacterium thermoautotrophicum Dinesh Christendat, Vivian Saridakis, Youngchang Kim, Ponni A. Kumar, Xiaohui Xu, Anthony Semesi, Andzrej Joachimiak, Cheryl H. Arrowsmith, and Aled M. Edwards PMCID: PMC2373630 An improved hydrogen bond potential: Impact on medium resolution protein structures Felcy Fabiola, Richard Bertram, Andrei Korostelev, and Michael S. Chapman PMCID: PMC2373622 Enzymatic conformational fluctuations along the reaction coordinate of cytidine deaminase Ryan C. Noonan, Charles W. Carter, JR., and Carey K. Bagdassarian PMCID: PMC2373634 Structural basis of α-amylase activation by chloride Nushin Aghajari, Georges Feller, Charles Gerday, and Richard Haser PMCID: PMC2373612 Role of water in the catalytic cycle of E. coli dihydrofolate reductase Paul Shrimpton and Rudolf K. Allemann PMCID: PMC2373639 Computational stabilization of human growth hormone Anton V. Filikov, Robert J. Hayes, Peizhi Luo, Diane M. Stark, Cheryl Chan, Anirban Kundu, and Bassil I. Dahiyat PMCID: PMC2373623 Substrate entropy in enzyme enantioselectivity: An experimental and molecular modeling study of a lipase Jenny Ottosson, Linda Fransson, and Karl Hult PMCID: PMC2373621 Site-directed spin labeling of a bacterial chemoreceptor reveals a dynamic, loosely packed transmembrane domain Alexander Barnakov, Christian Altenbach, Ludmila Barnakova, Wayne L. Hubbell, and Gerald L. Hazelbauer PMCID: PMC2373632 Solution structure of a yeast ubiquitin-like protein Smt3: The role of structurally less defined sequences in protein–protein recognitions Wanyun Sheng and Xiubei Liao PMCID: PMC2373614 Analysis of the factors that stabilize a designed two-stranded antiparallel β-sheet Juan F. Espinosa, Faisal A. Syud, and Samuel H. Gellman1 PMCID: PMC2373626 TEM-1 β-lactamase as a scaffold for protein recognition and assay Daniel Legendre, Bénédicte Vucic, Vincent Hougardy, Anne-Lise Girboux, Christophe Henrioul, Julien Van Haute, Patrice Soumillion, and Jacques Fastrez PMCID: PMC2373628 Importance of secondary structural specificity determinants in protein folding: Insertion of a native β-sheet sequence into an α-helical coiled-coil Stanley C. Kwok, Colin T. Mant, and Robert S. Hodges PMCID: PMC2373624 Unfolding mechanics of holo- and apocalmodulin studied by the atomic force microscope Rukman Hertadi and Atsushi Ikai PMCID: PMC2373631 BetaCore, a designed water soluble four-stranded antiparallel β-sheet protein Natàlia Carulla, Clare Woodward, and George Barany PMCID: PMC2373618 X-ray crystallographic and kinetic correlation of a clinically observed human fumarase mutation Marcel Estévez, Jeremy Skarda, Josh Spencer, Leonard Banaszak, and Todd M. Weaver PMCID: PMC2373640 Covalent cross-linking of proteins without chemical reagents Brigitte L. Simons, Mary C. King, Terry Cyr, Mary Alice Hefford, and Harvey Kaplan PMCID: PMC2373635 Structure and functional characterization of the periplasmic N-terminal polypeptide domain of the sugar-specific ion channel protein (ScrY porin) Jenny Michels, Armin Geyer, Viorel Mocanu, Wolfram Welte, Alma L. Burlingame, and Michael Przybylski PMCID: PMC2373611 For the Record Fold recognition without folds Kristin K. Koretke, Robert B. Russell, and Andrei N. Lupas PMCID: PMC2373620 Lipopolysaccharide phosphorylating enzymes encoded in the genomes of Gram-negative bacteria are related to the eukaryotic protein kinases A. Krupa and N. Srinivasan PMCID: PMC2373617 |
