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Volume 13(2);  February 2004
Accelerated Communication
Myoglobin cavities provide interior ligand pathway
Martha M. Teeter
Protein Sci. 2004 February; 13(2): 313–318. doi: 10.1110/ps.03334304.
PMCID: PMC2286717
Articles
Formation of amyloid fibrils from fully reduced hen egg white lysozyme
Aoneng Cao, Daoying Hu, and Luhua Lai
Protein Sci. 2004 February; 13(2): 319–324. doi: 10.1110/ps.03183404.
PMCID: PMC2286694
Disabling the folding catalyst is the last critical step in α-lytic protease folding
Erin L. Cunningham and David A. Agard
Protein Sci. 2004 February; 13(2): 325–331. doi: 10.1110/ps.03389704.
PMCID: PMC2286698
Thermal stability of human α-crystallins sensed by amide hydrogen exchange
Azeem Hasan, Jiong Yu, David L. Smith, and Jean B. Smith
Protein Sci. 2004 February; 13(2): 332–341. doi: 10.1110/ps.03180004.
PMCID: PMC2286712
High-temperature solution NMR structure of TmCsp
Astrid Jung, Christian Bamann, Werner Kremer, Hans Robert Kalbitzer, and Eike Brunner
Protein Sci. 2004 February; 13(2): 342–350. doi: 10.1110/ps.03281604.
PMCID: PMC2286716
Analysis of forces that determine helix formation in α-proteins
Gelena T. Kilosanidze, Alexey S. Kutsenko, Natalia G. Esipova, and Vladimir G. Tumanyan
Protein Sci. 2004 February; 13(2): 351–357. doi: 10.1110/ps.03429104.
PMCID: PMC2286714
Solvent–amino acid interaction energies in three-dimensional-lattice Monte Carlo simulations of a model 27-mer protein: Folding thermodynamics and kinetics
Kai Leonhard, John M. Prausnitz, and Clayton J. Radke
Protein Sci. 2004 February; 13(2): 358–369. doi: 10.1110/ps.03198204.
PMCID: PMC2286699
An automated in vitro protein folding screen applied to a human dynactin subunit
Christoph Scheich, Frank H. Niesen, Robert Seckler, and Konrad Büssow
Protein Sci. 2004 February; 13(2): 370–380. doi: 10.1110/ps.03304604.
PMCID: PMC2286713
The folding landscape of Streptomyces griseus protease B reveals the energetic costs and benefits associated with evolving kinetic stability
Stephanie M.E. Truhlar, Erin L. Cunningham, and David A. Agard
Protein Sci. 2004 February; 13(2): 381–390. doi: 10.1110/ps.03336804.
PMCID: PMC2286692
Accurate and efficient loop selections by the DFIRE-based all-atom statistical potential
Chi Zhang, Song Liu, and Yaoqi Zhou
Protein Sci. 2004 February; 13(2): 391–399. doi: 10.1110/ps.03411904.
PMCID: PMC2286705
An accurate, residue-level, pair potential of mean force for folding and binding based on the distance-scaled, ideal-gas reference state
Chi Zhang, Song Liu, Hongyi Zhou, and Yaoqi Zhou
Protein Sci. 2004 February; 13(2): 400–411. doi: 10.1110/ps.03348304.
PMCID: PMC2286718
Crystal structure of human dipeptidyl peptidase IV in complex with a decapeptide reveals details on substrate specificity and tetrahedral intermediate formation
Kathleen Aertgeerts, Sheng Ye, Mike G. Tennant, Michelle L. Kraus, Joe Rogers, Bi-Ching Sang, Robert J. Skene, David R. Webb, and G. Sridhar Prasad
Protein Sci. 2004 February; 13(2): 412–421. doi: 10.1110/ps.03460604.
PMCID: PMC2286704
Phylogenetic and evolutionary analysis of the PLUNC gene family
Colin D. Bingle, Elizabeth E. LeClair, Suzanne Havard, Lynne Bingle, Paul Gillingham, and C. Jeremy Craven
Protein Sci. 2004 February; 13(2): 422–430. doi: 10.1110/ps.03332704.
PMCID: PMC2286710
Zymogenic and enzymatic properties of the 70–80 loop mutants of factor X/Xa
Lin Chen, Chandrashekhara Manithody, Likui Yang, and Alireza R. Rezaie
Protein Sci. 2004 February; 13(2): 431–442. doi: 10.1110/ps.03406904.
PMCID: PMC2286711
Automated selection of positions determining functional specificity of proteins by comparative analysis of orthologous groups in protein families
Olga V. Kalinina, Andrey A. Mironov, Mikhail S. Gelfand, and Aleksandra B. Rakhmaninova
Protein Sci. 2004 February; 13(2): 443–456. doi: 10.1110/ps.03191704.
PMCID: PMC2286703
Role of Phe283 in enzymatic reaction of cyclodextrin glycosyltransferase from alkalophilic Bacillus sp.1011: Substrate binding and arrangement of the catalytic site
Ryuta Kanai, Keiko Haga, Toshihiko Akiba, Kunio Yamane, and Kazuaki Harata
Protein Sci. 2004 February; 13(2): 457–465. doi: 10.1110/ps.03408504.
PMCID: PMC2286706
Nucleotide recognition in the ATP-grasp protein carbamoyl phosphate synthetase
Michael Kothe and Susan G. Powers-Lee
Protein Sci. 2004 February; 13(2): 466–475. doi: 10.1110/ps.03416804.
PMCID: PMC2286696
Hydrogen/deuterium exchange studies of native rabbit MM-CK dynamics
Hortense Mazon, Olivier Marcillat, Eric Forest, and Christian Vial
Protein Sci. 2004 February; 13(2): 476–486. doi: 10.1110/ps.03380604.
PMCID: PMC2286700
A simple formalism on dynamics of proteins on potential energy landscapes
Rajamanickam Murugan and Shymalava Mazumdar
Protein Sci. 2004 February; 13(2): 487–493. doi: 10.1110/ps.03347504.
PMCID: PMC2286693
An evolutionary route to xylanase process fitness
Nisha Palackal, Yali Brennan, Walter N. Callen, Paul Dupree, Gerhard Frey, Florence Goubet, Geoffrey P. Hazlewood, Shaun Healey, Young E. Kang, Keith A. Kretz, Edd Lee, Xuqiu Tan, Geoffery L. Tomlinson, John Verruto, Vicky W.K. Wong, Eric J. Mathur, Jay M. Short, Dan E. Robertson, and Brian A. Steer
Protein Sci. 2004 February; 13(2): 494–503. doi: 10.1110/ps.03333504.
PMCID: PMC2286715
Structural alteration of cofactor specificity in Corynebacterium 2,5-diketo-D-gluconic acid reductase
Gulsah Sanli, Scott Banta, Stephen Anderson, and Michael Blaber
Protein Sci. 2004 February; 13(2): 504–512. doi: 10.1110/ps.03450704.
PMCID: PMC2286697
The role of hydrogen bonding in the enzymatic reaction catalyzed by HIV-1 protease
Joanna Trylska, Paweł Grochowski, and J. Andrew McCammon
Protein Sci. 2004 February; 13(2): 513–528. doi: 10.1110/ps.03372304.
PMCID: PMC2286701
Crystal structure of a tetrameric GDP-d-mannose 4,6-dehydratase from a bacterial GDP-d-rhamnose biosynthetic pathway
Nicole A. Webb, Anne M. Mulichak, Joseph S. Lam, Heather L. Rocchetta, and R. Michael Garavito
Protein Sci. 2004 February; 13(2): 529–539. doi: 10.1110/ps.03393904.
PMCID: PMC2286695
For the Record
Chalcone isomerase family and fold: No longer unique to plants
Michael Gensheimer and Arcady Mushegian
Protein Sci. 2004 February; 13(2): 540–544. doi: 10.1110/ps.03395404.
PMCID: PMC2286709
Solution structure of a BolA-like protein from Mus musculus
Takuma Kasai, Makoto Inoue, Seizo Koshiba, Takashi Yabuki, Masaaki Aoki, Emi Nunokawa, Eiko Seki, Takayoshi Matsuda, Natsuko Matsuda, Yasuko Tomo, Mikako Shirouzu, Takaho Terada, Naomi Obayashi, Hiroaki Hamana, Naoko Shinya, Ayako Tatsuguchi, Satoko Yasuda, Mayumi Yoshida, Hiroshi Hirota, Yo Matsuo, Kazutoshi Tani, Harukazu Suzuki, Takahiro Arakawa, Piero Carninci, Jun Kawai, Yoshihide Hayashizaki, Takanori Kigawa, and Shigeyuki Yokoyama
Protein Sci. 2004 February; 13(2): 545–548. doi: 10.1110/ps.03401004.
PMCID: PMC2286707
Validation of helical tilt angles in the solution NMR structure of the Z domain of Staphylococcal protein A by combined analysis of residual dipolar coupling and NOE data
Deyou Zheng, James M. Aramini, and Gaetano T. Montelione
Protein Sci. 2004 February; 13(2): 549–554. doi: 10.1110/ps.03351704.
PMCID: PMC2286702
The interface of a membrane-spanning leucine zipper mapped by asparagine-scanning mutagenesis
Weiming Ruan, Eric Lindner, and Dieter Langosch
Protein Sci. 2004 February; 13(2): 555–559. doi: 10.1110/ps.03357404.
PMCID: PMC2286708
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