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Volume 14(3);  March 2005
Articles
Contributions of hydrophobic domain interface interactions to the folding and stability of human γD-crystallin
Shannon L. Flaugh, Melissa S. Kosinski-Collins, and Jonathan King
Protein Sci. 2005 March; 14(3): 569–581. doi: 10.1110/ps.041111405.
PMCID: PMC2279286
Understanding the relationship between the primary structure of proteins and its propensity to be soluble on overexpression in Escherichia coli
Susan Idicula-Thomas and Petety V. Balaji
Protein Sci. 2005 March; 14(3): 582–592. doi: 10.1110/ps.041009005.
PMCID: PMC2279285
Hsp20, a novel α-crystallin, prevents Aβ fibril formation and toxicity
Sungmun Lee, Kenneth Carson, Allison Rice-Ficht, and Theresa Good
Protein Sci. 2005 March; 14(3): 593–601. doi: 10.1110/ps.041020705.
PMCID: PMC2279291
Protein folding: Defining a “standard” set of experimental conditions and a preliminary kinetic data set of two-state proteins
Karen L. Maxwell, David Wildes, Arash Zarrine-Afsar, Miguel A. De Los Rios, Andrew G. Brown, Claire T. Friel, Linda Hedberg, Jia-Cherng Horng, Diane Bona, Erik J. Miller, Alexis Vallée-Bélisle, Ewan R.G. Main, Francesco Bemporad, Linlin Qiu, Kaare Teilum, Ngoc-Diep Vu, Aled M. Edwards, Ingo Ruczinski, Flemming M. Poulsen, Birthe B. Kragelund, Stephen W. Michnick, Fabrizio Chiti, Yawen Bai, Stephen J. Hagen, Luis Serrano, Mikael Oliveberg, Daniel P. Raleigh, Pernilla Wittung-Stafshede, Sheena E. Radford, Sophie E. Jackson, Tobin R. Sosnick, Susan Marqusee, Alan R. Davidson, and Kevin W. Plaxco
Protein Sci. 2005 March; 14(3): 602–616. doi: 10.1110/ps.041205405.
PMCID: PMC2279278
Availability of short amino acid sequences in proteins
Joji M. Otaki, Shunsuke Ienaka, Tomonori Gotoh, and Haruhiko Yamamoto
Protein Sci. 2005 March; 14(3): 617–625. doi: 10.1110/ps.041092605.
PMCID: PMC2279279
Analysis of subsecond protein dynamics by amide hydrogen exchange and mass spectrometry using a quenched-flow setup
Wolfgang Rist, Fernanda Rodriguez, Thomas J.D. Jørgensen, and Matthias P. Mayer
Protein Sci. 2005 March; 14(3): 626–632. doi: 10.1110/ps.041098305.
PMCID: PMC2279298
Normal modes for predicting protein motions: A comprehensive database assessment and associated Web tool
Vadim Alexandrov, Ursula Lehnert, Nathaniel Echols, Duncan Milburn, Donald Engelman, and Mark Gerstein
Protein Sci. 2005 March; 14(3): 633–643. doi: 10.1110/ps.04882105.
PMCID: PMC2279292
Structural features of the focal adhesion kinase–paxillin complex give insight into the dynamics of focal adhesion assembly
Craig M. Bertolucci, Cristina D. Guibao, and Jie Zheng
Protein Sci. 2005 March; 14(3): 644–652. doi: 10.1110/ps.041107205.
PMCID: PMC2279287
Protein aggregation determinants from a simplified model: Cooperative folders resist aggregation
Louis A. Clark
Protein Sci. 2005 March; 14(3): 653–662. doi: 10.1110/ps.041017305.
PMCID: PMC2279276
All three Ca2+-binding loops of photoproteins bind calcium ions: The crystal structures of calcium-loaded apo-aequorin and apo-obelin
Lu Deng, Eugene S. Vysotski, Svetlana V. Markova, Zhi-Jie Liu, John Lee, John Rose, and Bi-Cheng Wang
Protein Sci. 2005 March; 14(3): 663–675. doi: 10.1110/ps.041142905.
PMCID: PMC2279293
An efficient strategy for high-throughput expression screening of recombinant integral membrane proteins
Said Eshaghi, Marie Hedrén, Marina Ignatushchenko Abdel Nasser, Tove Hammarberg, Anders Thornell, and Pär Nordlund
Protein Sci. 2005 March; 14(3): 676–683. doi: 10.1110/ps.041127005.
PMCID: PMC2279288
Insights into the domains required for dimerization and assembly of human αB crystallin
Joy G. Ghosh and John I. Clark
Protein Sci. 2005 March; 14(3): 684–695. doi: 10.1110/ps.041152805.
PMCID: PMC2279284
β2-Microglobulin isoforms display an heterogeneous affinity for type I collagen
Sofia Giorgetti, Antonio Rossi, Palma Mangione, Sara Raimondi, Sara Marini, Monica Stoppini, Alessandra Corazza, Paolo Viglino, Gennaro Esposito, Giuseppe Cetta, Giampaolo Merlini, and Vittorio Bellotti
Protein Sci. 2005 March; 14(3): 696–702. doi: 10.1110/ps.041194005.
PMCID: PMC2279294
Test of the Binding Threshold Hypothesis for olfactory receptors: Explanation of the differential binding of ketones to the mouse and human orthologs of olfactory receptor 912-93
Patrick Hummel, Nagarajan Vaidehi, Wely B. Floriano, Spencer E. Hall, and William A. Goddard, III
Protein Sci. 2005 March; 14(3): 703–710. doi: 10.1110/ps.041119705.
PMCID: PMC2279295
Identification of the ligand binding sites on the molecular surface of proteins
Kengo Kinoshita and Haruki Nakamura
Protein Sci. 2005 March; 14(3): 711–718. doi: 10.1110/ps.041080105.
PMCID: PMC2279290
Structure and mechanism of ADP-ribose-1″-monophosphatase (Appr-1″-pase), a ubiquitous cellular processing enzyme
Desigan Kumaran, Subramaniam Eswaramoorthy, F. William Studier, and Subramanyam Swaminathan
Protein Sci. 2005 March; 14(3): 719–726. doi: 10.1110/ps.041132005.
PMCID: PMC2279289
The crystal structure of rabbit phosphoglucose isomerase complexed with D-sorbitol-6-phosphate, an analog of the open chain form of D-glucose-6-phosphate
Ji Hyun Lee and Constance J. Jeffery
Protein Sci. 2005 March; 14(3): 727–734. doi: 10.1110/ps.041070205.
PMCID: PMC2279277
Microsecond timescale backbone conformational dynamics in ubiquitin studied with NMR R relaxation experiments
Francesca Massi, Michael J. Grey, and Arthur G. Palmer, III
Protein Sci. 2005 March; 14(3): 735–742. doi: 10.1110/ps.041139505.
PMCID: PMC2279275
Structural and mechanistic studies of chloride induced activation of human pancreatic α-amylase
Robert Maurus, Anjuman Begum, Hsin-Hen Kuo, Andrew Racaza, Shin Numao, Carsten Andersen, Jeppe W. Tams, Jesper Vind, Christopher M. Overall, Stephen G. Withers, and Gary D. Brayer
Protein Sci. 2005 March; 14(3): 743–755. doi: 10.1110/ps.041079305.
PMCID: PMC2279296
Solution structure of the PWWP domain of the hepatoma-derived growth factor family
Nobukazu Nameki, Naoya Tochio, Seizo Koshiba, Makoto Inoue, Takashi Yabuki, Masaaki Aoki, Eiko Seki, Takayoshi Matsuda, Yukiko Fujikura, Miyuki Saito, Masaomi Ikari, Megumi Watanabe, Takaho Terada, Mikako Shirouzu, Mayumi Yoshida, Hiroshi Hirota, Akiko Tanaka, Yoshihide Hayashizaki, Peter Güntert, Takanori Kigawa, and Shigeyuki Yokoyama
Protein Sci. 2005 March; 14(3): 756–764. doi: 10.1110/ps.04975305.
PMCID: PMC2279273
Impact of remote mutations on metallo-β-lactamase substrate specificity: Implications for the evolution of antibiotic resistance
Peter Oelschlaeger, Stephen L. Mayo, and Juergen Pleiss
Protein Sci. 2005 March; 14(3): 765–774. doi: 10.1110/ps.041093405.
PMCID: PMC2279297
Binding of the anti-tubercular drug isoniazid to the arylamine N-acetyltransferase protein from Mycobacterium smegmatis
James Sandy, Simon Holton, Elizabeth Fullam, Edith Sim, and Martin Noble
Protein Sci. 2005 March; 14(3): 775–782. doi: 10.1110/ps.041163505.
PMCID: PMC2279269
Dynamics of the gp130 cytokine complex: A model for assembly on the cellular membrane
Andreas Schroers, Oliver Hecht, Karl-Josef Kallen, Michael Pachta, Stefan Rose-John, and Joachim Grötzinger
Protein Sci. 2005 March; 14(3): 783–790. doi: 10.1110/ps.041117105.
PMCID: PMC2279283
Crystal structure of the pyridoxal-5′-phosphate-dependent serine dehydratase from human liver
Lei Sun, Mark Bartlam, Yiwei Liu, Hai Pang, and Zihe Rao
Protein Sci. 2005 March; 14(3): 791–798. doi: 10.1110/ps.041179105.
PMCID: PMC2279282
The orientations of cytochrome c in the highly dynamic complex with cytochrome b5 visualized by NMR and docking using HADDOCK
Alexander N. Volkov, Davide Ferrari, Jonathan A.R. Worrall, Alexandre M.J.J. Bonvin, and Marcellus Ubbink
Protein Sci. 2005 March; 14(3): 799–811. doi: 10.1110/ps.041150205.
PMCID: PMC2279274
Ligand-binding regulation of LXR/RXR and LXR/PPAR heterodimerizations: SPR technology-based kinetic analysis correlated with molecular dynamics simulation
Liduo Yue, Fei Ye, Chunshan Gui, Haibin Luo, Jianhua Cai, Jianhua Shen, Kaixian Chen, Xu Shen, and Hualiang Jiang
Protein Sci. 2005 March; 14(3): 812–822. doi: 10.1110/ps.04951405.
PMCID: PMC2279270
Protein Structure Report
Crystal structure of a predicted phosphoribosyltransferase (TT1426) from Thermus thermophilus HB8 at 2.01 Å resolution
Mutsuko Kukimoto-Niino, Rie Shibata, Kazutaka Murayama, Hiroaki Hamana, Madoka Nishimoto, Yoshitaka Bessho, Takaho Terada, Mikako Shirouzu, Seiki Kuramitsu, and Shigeyuki Yokoyama
Protein Sci. 2005 March; 14(3): 823–827. doi: 10.1110/ps.041229405.
PMCID: PMC2279281
For the Record
Polymerization of the SAM domain of MAPKKK Ste11 from the budding yeast: Implications for efficient signaling through the MAPK cascades
Surajit Bhattacharjya, Ping Xu, Mukundan Chakrapani, Linda Johnston, and Feng Ni
Protein Sci. 2005 March; 14(3): 828–835. doi: 10.1110/ps.041122105.
PMCID: PMC2279271
Crystallization of bacteriorhodopsin from bicelle formulations at room temperature
Salem Faham, Gabriella L. Boulting, Elizabeth A. Massey, Sarah Yohannan, Dawn Yang, and James U. Bowie
Protein Sci. 2005 March; 14(3): 836–840. doi: 10.1110/ps.041167605.
PMCID: PMC2279272
Book Review
Membrane protein protocols: Expression, purification and characterization, edited by Barry S. Selinsky. 2003.: Humana Press. $99.50.
Lars-Oliver Essen
Protein Sci. 2005 March; 14(3): 841. doi: 10.1110/ps.041031405.
PMCID: PMC2279280
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