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Volume 3(12);  December 1994
Research Articles
A Year of Progress
H. Neurath
Protein Sci. 1994 December; 3(12): 2165.
PMCID: PMC2142784
Conformational stability of dimeric proteins: quantitative studies by equilibrium denaturation.
K. E. Neet and D. E. Timm
Protein Sci. 1994 December; 3(12): 2167–2174.
PMCID: PMC2142765
Thermodynamic characterization of an equilibrium folding intermediate of staphylococcal nuclease.
D. Xie, R. Fox, and E. Freire
Protein Sci. 1994 December; 3(12): 2175–2184.
PMCID: PMC2142756
Six new candidate members of the alpha/beta twisted open-sheet family detected by sequence similarity to flavodoxin.
R. Grandori and J. Carey
Protein Sci. 1994 December; 3(12): 2185–2193.
PMCID: PMC2142762
Cavities and packing at protein interfaces.
S. J. Hubbard and P. Argos
Protein Sci. 1994 December; 3(12): 2194–2206.
PMCID: PMC2142764
A revised set of potentials for beta-turn formation in proteins.
E. G. Hutchinson and J. M. Thornton
Protein Sci. 1994 December; 3(12): 2207–2216.
PMCID: PMC2142776
Contributions of a hydrogen bond/salt bridge network to the stability of secondary and tertiary structure in lambda repressor.
S. Marqusee and R. T. Sauer
Protein Sci. 1994 December; 3(12): 2217–2225.
PMCID: PMC2142769
Hydrogen exchange in BPTI variants that do not share a common disulfide bond.
B. A. Schulman and P. S. Kim
Protein Sci. 1994 December; 3(12): 2226–2232.
PMCID: PMC2142759
Three-dimensional structure of Schistosoma japonicum glutathione S-transferase fused with a six-amino acid conserved neutralizing epitope of gp41 from HIV.
K. Lim, J. X. Ho, K. Keeling, G. L. Gilliland, X. Ji, F. Rüker, and D. C. Carter
Protein Sci. 1994 December; 3(12): 2233–2244.
PMCID: PMC2142753
Crystal structure of p-hydroxybenzoate hydroxylase reconstituted with the modified FAD present in alcohol oxidase from methylotrophic yeasts: evidence for an arabinoflavin.
W. J. van Berkel, M. H. Eppink, and H. A. Schreuder
Protein Sci. 1994 December; 3(12): 2245–2253.
PMCID: PMC2142777
The isomorphous structures of prethrombin2, hirugen-, and PPACK-thrombin: changes accompanying activation and exosite binding to thrombin.
J. Vijayalakshmi, K. P. Padmanabhan, K. G. Mann, and A. Tulinsky
Protein Sci. 1994 December; 3(12): 2254–2271.
PMCID: PMC2142772
On the nature of the unfolded intermediate in the in vitro transition of the colicin E1 channel domain from the aqueous to the membrane phase.
S. L. Schendel and W. A. Cramer
Protein Sci. 1994 December; 3(12): 2272–2279.
PMCID: PMC2142766
Structure-function analysis of human IL-6: identification of two distinct regions that are important for receptor binding.
A. Hammacher, L. D. Ward, J. Weinstock, H. Treutlein, K. Yasukawa, and R. J. Simpson
Protein Sci. 1994 December; 3(12): 2280–2293.
PMCID: PMC2142761
Ligand-induced conformational changes in the lactose permease of Escherichia coli: evidence for two binding sites.
J. Wu, S. Frillingos, J. Voss, and H. R. Kaback
Protein Sci. 1994 December; 3(12): 2294–2301.
PMCID: PMC2142758
The role of transmembrane domain III in the lactose permease of Escherichia coli.
M. Sahin-Tóth, S. Frillingos, E. Bibi, A. Gonzalez, and H. R. Kaback
Protein Sci. 1994 December; 3(12): 2302–2310.
PMCID: PMC2142773
Two domains of interaction with calcium binding proteins can be mapped using fragments of calponin.
F. L. Wills, W. D. McCubbin, M. Gimona, P. Strasser, and C. M. Kay
Protein Sci. 1994 December; 3(12): 2311–2321.
PMCID: PMC2142774
The structures of RNase A complexed with 3'-CMP and d(CpA): active site conformation and conserved water molecules.
I. Zegers, D. Maes, M. H. Dao-Thi, F. Poortmans, R. Palmer, and L. Wyns
Protein Sci. 1994 December; 3(12): 2322–2339.
PMCID: PMC2142771
Conserved sequence features of inteins (protein introns) and their use in identifying new inteins and related proteins.
S. Pietrokovski
Protein Sci. 1994 December; 3(12): 2340–2350.
PMCID: PMC2142770
Dissecting the energetics of an antibody-antigen interface by alanine shaving and molecular grafting.
L. Jin and J. A. Wells
Protein Sci. 1994 December; 3(12): 2351–2357.
PMCID: PMC2142782
Determinants of protein side-chain packing.
R. Tanimura, A. Kidera, and H. Nakamura
Protein Sci. 1994 December; 3(12): 2358–2365.
PMCID: PMC2142755
Residue-residue contact substitution probabilities derived from aligned three-dimensional structures and the identification of common folds.
M. A. Rodionov and M. S. Johnson
Protein Sci. 1994 December; 3(12): 2366–2377.
PMCID: PMC2142768
Molecular evolution and domain structure of plasminogen-related growth factors (HGF/SF and HGF1/MSP).
L. E. Donate, E. Gherardi, N. Srinivasan, R. Sowdhamini, S. Aparicio, and T. L. Blundell
Protein Sci. 1994 December; 3(12): 2378–2394.
PMCID: PMC2142779
Conservation of polyproline II helices in homologous proteins: implications for structure prediction by model building.
A. A. Adzhubei and M. J. Sternberg
Protein Sci. 1994 December; 3(12): 2395–2410.
PMCID: PMC2142760
Mass spectrometric measurement of protein amide hydrogen exchange rates of apo- and holo-myoglobin.
R. S. Johnson and K. A. Walsh
Protein Sci. 1994 December; 3(12): 2411–2418.
PMCID: PMC2142783
Disulfide crosslinks to probe the structure and flexibility of a designed four-helix bundle protein.
L. Regan, A. Rockwell, Z. Wasserman, and W. DeGrado
Protein Sci. 1994 December; 3(12): 2419–2427.
PMCID: PMC2142780
Topographic study of arrestin using differential chemical modifications and hydrogen/deuterium exchange.
H. Ohguro, K. Palczewski, K. A. Walsh, and R. S. Johnson
Protein Sci. 1994 December; 3(12): 2428–2434.
PMCID: PMC2142757
High-sensitivity sequencing of large proteins: partial structure of the rapamycin-FKBP12 target.
H. Erdjument-Bromage, M. Lui, D. M. Sabatini, S. H. Snyder, and P. Tempst
Protein Sci. 1994 December; 3(12): 2435–2446.
PMCID: PMC2142775
Crystallization and preliminary X-ray analysis of glucose-fructose oxidoreductase from Zymomonas mobilis.
H. Loos, U. Ermler, G. A. Sprenger, and H. Sahm
Protein Sci. 1994 December; 3(12): 2447–2449.
PMCID: PMC2142752
Crystallization and preliminary X-ray crystallographic analysis of the 38-kDa immunodominant antigen of Mycobacterium tuberculosis.
A. Choudhary, M. N. Vyas, N. K. Vyas, Z. Chang, and F. A. Quiocho
Protein Sci. 1994 December; 3(12): 2450–2451.
PMCID: PMC2142763
High mobility group protein, HMG-1, contains insignificant glycosyl modification.
Y. B. Chao, W. M. Scovell, and S. B. Yan
Protein Sci. 1994 December; 3(12): 2452–2454.
PMCID: PMC2142767
The subunit interfaces of oligomeric enzymes are conserved to a similar extent to the overall protein sequences.
N. V. Grishin and M. A. Phillips
Protein Sci. 1994 December; 3(12): 2455–2458.
PMCID: PMC2142754
Reaction mechanisms, catalysis, and movement.
W. P. Jencks
Protein Sci. 1994 December; 3(12): 2459–2464.
PMCID: PMC2142781
Dorothy Crowfoot Hodgkin (1910-1994).
J. P. Glusker
Protein Sci. 1994 December; 3(12): 2465–2469.
PMCID: PMC2142778
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