LoBoS 5

With the unreliability of the motherboards in LoBoS 4, the Computational Biophysics Section staff decided to switch back to Intel CPUs with Supermicro motherboards. As the Pentium 4 processor was not designed for multiprocessor operations, LoBoS 5 nodes were delivered with dual Intel Xeon processors. Approval for the cluster was granted in June, 2003 and LoBoS 5 was installed in stages between March and December of 2004. The first batch of 88 nodes were equipped with 2.66 GHz Xeons. All subsequent nodes have dual 3.06 GHz processors.

With 190 nodes now in operation, the LoBoS cluster has reached the limits of the physical space available to it on campus. A new, off-campus computer room has been constructed and work is underway to build out LoBoS 6.

Equipment Notes
190 compute nodes
  • SuperMicro motherboard
  • CPU:
    • 88 nodes: Dual 2.66 GHz Xeon 512 KB L2 cache
    • 102 nodes: Dual 3.06 GHz Xeon 512 KB L2 cache
  • 2048 MB PC-2100 DDR SDRAM and 1024 MB of swap space
  • 120 GB 7200 RPM EIDE hard drive
  • Onboard gigabit ethernet network interface card
  • Myrinet Interface:
    • 88 nodes: Myrinet E-card fiber network interface card
    • 40 nodes: No Myrinet connectivity
    • 62 nodes: Myrinet C-card fiber network interface card from LoBoS 4
2 master nodes
  • SuperMicro X5DPA motherboard
  • Dual 2.8 GHz Intel Xeon CPUs with 512 KB L2 cache
  • 2 x 120 GB EIDE hard drives in a RAID1 (mirroring) configuration
  • 4.8 TB RAID storage from EonStor equipped file servers (available throughout the LoBoS network).
Myrinet switching hardware The Myrinet switching hardware from LoBoS 4 was retained. In addition, a second, identical switch and line cards were added.

LoBoS5 nodes
LoBoS 5 nodes.