New Publications
2006-2008 Publications for RWU 4353
FISHERIES
U.S. Fish
and Wildlife Service (USFWS). 2008.
Bull Trout Recovery: Monitoring and Evaluation Guidance. Report
prepared for the U.S. Fish and Wildlife Service by the Bull Trout
Recovery and Monitoring Technical Group (RMEG). Portland, Oregon.
Version 1 - 74 pp.
Peterson, D. P., Rieman, B. E., Dunham, J. B.,
Fausch, K. D., and M. K. Young. 2008. Analysis
of trade-offs between the threat of invasion by nonnative
brook trout (Salvelinus fontinalis) and intentional
isolation for native westslope cutthroat trout (Oncorhynchus
clarkii lewisi). Canadian
Journal of Fisheries and Aquatic Sciences,
65(4):557–573
Appendix 1,
Appendix 2
Tonina,
D., Luce, C.H., Rieman, B., Buffington, J.M.,
Goodwin, P., Clayton, Stephen R., Ali, S.M., Barry, J.J., and
Berenbrock, C. 2008.
Hydrological response to timber harvest in northern Idaho:
implications for channel scour and persistence of salmonids.
Hydrological Processes, doi: 10.1002/hyp.6918.
Rieman, D.E., Isaak, D., Adams, S., Horan,
D., Nagel, D., Luce, C., and D. Myers.
2007.
Anticipated climate warming effects on bull trout habitats
and populations across the Interior Columbia River Basin.
Transactions of the American Fisheries Society.
136:1552-1565.
Peterson, D.P., Rieman, B.E., Dunham,
J.B., Fausch, K.D., and Young, M.K. 2007
Analyzing tradeoffs between the threat of invasion by brook
trout and effects of intentional isolation for native
westslope cutthroat trout. Pages
51–57 In Carline, R.F.; LoSapio, C., eds. 2007. Sustaining
wild trout in a changing world; proceedings of
Wild Trout IX symposium; 2007 October 9-12; West
Yellowstone, Montana. 308 pages.
Swenson, E. A., Rosenberger, A. E., and P. J.
Howell. 2007. Validation
of endoscopy for determination of maturity in small
salmonids and sex of mature individuals.
Transactions of the American Fisheries Society. 136:994–998.
Benjamin, J.R., J.B. Dunham,
and M.R. Dare. 2007.
Invasion by nonnative
brook trout in Panther Creek, Idaho: roles of local habitat quality,
biotic resistance, and connectivity to source habitats.
Transactions of the American Fisheries Society 136: 875-888.
Benjamin, J.R. 2006.
Invasion by nonnative brook trout in Panther Creek, Idaho: Roles of habitat quality, connectivity, and biotic resistance. M.S. Thesis, Boise State University, Idaho.
Courbois,
J., S.L. Katz, D.J. Isaak, M. Rub, C.
Jordan, A. Steel, R.F. Thurow, and T. Olsen. In
Preparation.
An evaluation of probability sampling strategies
for estimating
Chinook-salmon population size for redd count surveys.
Canadian Journal of Fisheries and Aquatic Sciences.
Downs, C.C., D. Horan, E. Morgan-Harris, and R.
Jakubowski. 2006.
Spawning demographics and juvenile dispersal of
an adfluvial bull trout population in Trestle Creek, Idaho. North
American Journal of Fisheries Management 26:190-200.
Dunham, J.B. and M.M.
Peacock. 2006.
Landscape attributes and life history
variability shape genetic structure of trout populations in a stream
network. Landscape Ecology 21:901-916.
Fausch, C., B. Rieman, J. Dunham, and
M. Young. 2006. Strategies for conserving native salmonid
populations at risk from nonnative invasions: tradeoffs in using
barriers to upstream movement. USDA Forest Service, Rocky Mountain
Research Station, GTR-RMRS-174, Fort Collins, CO.
Isaak, D.J., R.F. Thurow,
B.E. Rieman, and J.B. Dunham. 2007.
Chinook salmon
use of spawning patches: relative roles of habitat
quality, size, and connectivity. Ecological
Applications. 17(2):352-364.
Isaak,
D.J. and R.F. Thurow. 2006.
Network-scale and temporal variation in Chinook salmon redd
distributions: patterns inferred from spatially continuous
replicate surveys. Canadian Journal of Fisheries
and Aquatic Sciences 63:285-296.
McGrath, C.C. and W.M. Lewis, Jr.
2007. Competition and predation as mechanisms for displacement of
greenback cutthroat trout by brook trout. Transactions of the
American Fisheries Society 136:1381-1392.
Monnot, Lauri, J.B.
Dunham, T. Hoem, and P. Koetsier. 2008.
Influences of body size and environmental factors on autumn
downstream migration of bull trout in the Boise River, Idaho.
North American Journal of Fisheries Management 28: 231-240. doi: 10:
1577/M06-095.1.
Neville, H., D.J. Isaak,
R. Thurow, J. Dunham, and B. Rieman.
2007.
Microsatellite variation reveals weak genetic structure and
retention of genetic variability in threatened Chinook
salmon (Oncorhynchus tshawytscha) within a Snake
River watershed. Conservation Genetics
8(1):133-147.
Neville, H.M., J.B. Dunham, and M. Peacock.
2006.
Assessing connectivity in salmonid fishes with DNA microsatellite
markers, In K.R. Crooks and M. Sanjayan (eds.), Connectivity
Conservation. Cambridge University Press, GB, p. 318-342.
Neville, H.M., D.J. Isaak, J.B. Dunham, R. F.
Thurow, and B.E. Rieman. 2006.
Fine-scale natal homing and localized movement as shaped by sex and
spawning habitat in Chinook salmon: insights from spatial
autocorrelation analysis of individual genotypes. Molecular
Ecology, 15: 4589-4602. doi 10.1111/j.1365-294X.2006.03082.x
Reeves, G.H., P.A. Bisson, B.E. Rieman, L.E. Benda.
2006. Postfire Logging in Riparian Areas. Conservation Biology.
20(4):994-1004.
Rieman, B.E., J.D. Dunham, J.
Clayton. 2006.
Emerging concepts for management of river
ecosystems and challenges to applied integration of physical and
biological sciences in the Pacific Northwest. Journal of River
Basin Management 4(2):85-97.
Rieman, B.E., J.T.
Peterson, and D.E. Myers. 2006.
Have brook trout (Salvelinus
fontinalis) displaced bull trout (Salvelinus confluentus)
along longitudinal gradients in central Idaho streams? Canadian
Journal of Fish and Aquatic Sciences 63:63-78.
Thurow, R.F., B.E. Rieman, D.C. Lee, P.J.
Howell, and R.D. Perkinson. 2007. Distribution and status of redband
trout in the interior Columbia River Basin and portions of the
Klamath River and Great Basins, In R.K. Schroeder and J.D. Hall
(eds.), Redband Trout: Resilience and Challenge in a Changing
Landscape. Oregon Chapter, American Fisheries Society, Corvallis, p.
28-46.
Thurow, R.F., J.T. Peterson, J.W. Guzevich.
2006. Utility
and Validation of Night Snorkel Counts for Estimating Bull
Trout Abundance in First-to-Third Order Streams. North
American Journal of Fisheries Management 26:117-132
Whiteley, A., P. Spruell, B.
Rieman and F. Allendorf. 2006.
Fine-scale Genetic Structure of
Bull Trout at the Southern Distribution Limit. Transactions of the
American Fisheries Society 135:1238-1253.
WATERSHED
McKean, J.A., D.J. Isaak,
and C.W. Wright. In Press.
Geomorphic controls on salmon nesting patterns described by a new,
narrow-beam terrestrial-aquatic lidar. Frontiers in
Ecology and the Environment.
2008; 6, doi:10.1890/070109.
(zip-file for download - 13,153 KB)
Barry, J.J.,
Buffington, J.M., Goodwin, P., King, J.G., and Emmett,
W.W.
2008.
Performance of
bed-load transport equations relative to geomorphic significance: predicting
effective discharge and its transport rate. Journal of Hydraulic Engineering
134(5): 601-615. doi 10.1061/(ASCE)0733-9429(2008)134:5(601).
Roper, B.B.,
Buffington, J.M., Archer, E., Moyer, C., and Ward, M.
2008. The role
of observer variation in determining Rosgen stream types in
northeastern Oregon mountain streams. Journal of the
American Water Resources Association 44(2): 417-427.
doi:10.1111/j.1752-1688.2008.00171.x.
Tonina,
D., Luce, C.H., Rieman, B., Buffington, J.M.,
Goodwin, P., Clayton, Stephen R., Ali, S.M., Barry, J.J.,
and Berenbrock, C. 2008.
Hydrological
response to timber harvest in northern Idaho: implications
for channel scour and persistence of salmonids.
Hydrological Processes, doi: 10.1002/hyp.6918.
Buffington, J. M., and Tonina,
D. 2008.
Discussion of "Evaluating vertical velocities between the stream and the
hyporheic zone from temperature data" by Seydell, I., Wawra, B.E., and Zanke,
U.C.E. In Gravel-Bed Rivers 6–From Process Understanding to River
Restoration. Edited by Habersack, H., Piégay, H., and Rinaldi,
M. Elsevier, pp. 128-131.
Tonina, D., and Bellin, A.
2008. Effects of pore-scale dispersion, degree of heterogeneity, sampling
size, and source volume on the concentration moments of conservative
solutes in heterogeneous formations. Advances in Water Resources
31:339-354. doi:10.1016/j.advwatres.2007.08.009.
Barry, J.J.
2007. Bed load
transport in gravel-bed rivers, unpub. Ph.D. dissertation, University of
Idaho, Boise, ID, 164 pp.
Barry, J.J., Buffington, J.M., King,
J.G. 2007.
Correction to "A
general power equation for predicting bed load transport rates in gravel bed
rivers". Water Resources
Research 43:W08702. doi:10.1029/2007WR006103.
Bellin, A., and Tonina, D.
2007. Probability density function of non-reactive solute concentration in
heterogeneous porous formations. Journal of Contaminant Hydrology
94:109-125. doi:10.1016/j.jconhyd.2007.05.005.
Benjamin, J. R., Dunham, J.B., and Dare,
M. R.
2007.
Invasion by
non-native brook trout in Panther Creek, Idaho: roles of habitat quality, biotic
resistance, and connectivity to source habitats. Transactions of the
American Fisheries Society 136:875-888.
Bisson, Peter A.,
Dunham, J.B., Rosenberger,
A. E.,
Luce, C. H.,
and Rieman,
B. E.
2007. Influences of Wildfire
and Channel Reorganization on Spatial and Temporal Variation in Stream
Temperature and the Distribution of Fish and Amphibians. Ecosystems
doi: 10.1007/s10021-007-9029-8.
Dunham, J.B. , Rosenberger,
A. E.,
Luce, C. H.
and Rieman,
B. E.
2007. Influences of Wildfire
and Channel Reorganization on Spatial and Temporal Variation in Stream
Temperature and the Distribution of Fish and Amphibians. Ecosystems
doi: 10.1007/s10021-007-9029-8.
Rieman, B.E., Isaak, D.,
Adams, S., Horan,
D., Nagel, D., Luce, C., and Myers,
D.
2007. Anticipated climate warming effects on bull trout habitats
and populations across the Interior Columbia River Basin.
Transactions of the American Fisheries Society 136:1552-1565.
Tonina, D.,
Buffington, J.M. 2007.
Hyporheic exchange in gravel bed
rivers with pool-riffle morphology: Laboratory experiments and
three-dimensional modeling. Water Resources Research 43:W01421.
doi:10.1029/2005WR004328.
Bisson, P.A., Montgomery, D.R., and
Buffington, J.M. 2006.
Valley segments,
stream reaches, and channel units. In Methods in Stream Ecology.
Edited
by Hauer, F.R. and Lamberti, G.A. Academic Press/Elsevier, San Diego, CA.
pp. 23-49.
Book
Buffington, J.M.; Montgomery,
D.R.; Greenberg, H.M. 2006. Erratum: Basin-scale availability of salmonid spawning gravel as influenced by channel type and hydraulic roughness
in mountain catchments. Canadian Journal of Fisheries and Aquatic Sciences
63:2389.
Erratum
Burke, M., Jorde, K., Buffington, J.M., Braatne, J. and Benjakar, R.
2006.
Spatial distribution
of impacts to channel bed mobility due to flow regulation, Kootenai River, USA. Proceedings of the 8th
Federal Interagency Sedimentation Conference, Reno, NV, April 2-6, 2006.
Scheidt, N.E. 2006.
Stream succession: Channel changes after wildfire disturbance. M.S.
Thesis, University of Idaho, Boise. 60 pp.
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