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Streptococcus mutans Search Results

Record: 1 of 1  
MiniMap IGR715 IGR713 IGR717 IGR714 IGR718 IGR712 IGR716 SMu0819 SMu0820 cca, - SMu0822 SMu0824 SMu0825 ypjG, - SMu0823 hsdR, - SMu0818 SMu0819 SMu0820 cca, - SMu0822 SMu0824 SMu0825 ypjG, - SMu0823 hsdR, - SMu0818 SMu0820 cca, - SMu0822 SMu0824 SMu0825 ypjG, - SMu0823 hsdR, - SMu0818 dapB, - SMu0821 dapB, - SMu0821 SMu0819


LANL Gene ID: SMu0823

GenBank Locus Tag: SMU.902

DNA Molecule Name:
1  

GenBank ID:
24379354

Gene Name:
ypjG  

Definition:
ABC transporter, ATP-binding protein

Cellular Location:
Cytoplasm, Membrane [Evidence]

Gene Start:
856964

Gene Stop:
858832

Gene Length:
1869

Molecular Weight*:
71157

pI*:
5.00

Net Charge*:
-21.02

EC:
 

Functional Class:
Transport and binding proteins; ABC Superfamily: ATP-binding protein  

Gene Ontology:
Molecular function
  GO:0000166    nucleotide binding
  GO:0005524    ATP binding
  GO:0016887    ATPase activity
  GO:0017111    nucleoside-triphosphatase activity


Pathway: pathway table

Comment:
For other components see SMu0826 (MSD2).

View in HOMD Genome Viewer

Blast Summary:  PSI-Blast Search
Several matches in gapped BLAST to ABC transporter, ATP-binding protein: residues 1-621 are 69% similar to the protein in S.pyogenes (15674895|)and are 70% similar to the protein from S.pneumoniae (15901396|).






The best hit to the Streptococcus agalactiae 2603 V/R genome is to SAG1340 (0.0).


Top Blast Hits:  Updated monthly
Click here to view the entire PsiBlast results.
 gi|24379354|ref|NP_721309.1|  putative ABC transporter, ATP-...  1137   0.0  
 gi|116627322|ref|YP_819941.1|  ATPase component of ABC trans...   910   0.0  
 gi|55820513|ref|YP_138955.1|  ABC transporter, drug resistan...   908   0.0  
 gi|76787048|ref|YP_329981.1|  ABC transporter, ATP-binding p...   894   0.0  
 gi|22537487|ref|NP_688338.1|  ABC transporter, ATP-binding p...   892   0.0  
 gi|76798775|ref|ZP_00780991.1|  ABC transporter, ATP-binding...   889   0.0  
 gi|77409478|ref|ZP_00786170.1|  ABC transporter, ATP-binding...   888   0.0  
 gi|81096800|ref|ZP_00875130.1|  ABC transporter [Streptococc...   873   0.0  
 gi|146318484|ref|YP_001198196.1|  ATPase component of ABC tr...   866   0.0  
 gi|157074879|gb|ABV09562.1|  ABC transporter, ATP-binding pr...   848   0.0


InterPro Summary:  InterProScan

InterPro
IPR003439
Domain
ABC transporter related
PD000006 [155-198]T 0.0 PD000006 ABC_transporter[438-480]T 0.0 PD000006 ABC_transporter ABC_transporter
PF00005 [29-228]T 5.09998762524108E-35 PF00005 ABC_tran[342-510]T 2.10000267834025E-33 PF00005 ABC_tran ABC_tran
PS50893 [4-252]T 0.0 PS50893 ABC_TRANSPORTER_2[317-534]T 0.0 PS50893 ABC_TRANSPORTER_2 ABC_TRANSPORTER_2
InterPro
IPR003593
Domain
AAA+ ATPase, core
SM00382 [28-235]T 2.70000000000008E-11 SM00382 AAA[341-516]T 9.200000000000099E-9 SM00382 AAA AAA
noIPR
unintegrated
unintegrated
G3DSA:3.40.50.300 [4-233]T 2.1000026783402502E-36 G3DSA:3.40.50.300 G3DSA:3.40.50.300[316-562]T 4.30000170645879E-34 G3DSA:3.40.50.300 G3DSA:3.40.50.300 G3DSA:3.40.50.300
PTHR19211 [128-587]T 0.0 PTHR19211 PTHR19211 PTHR19211
PTHR19211:SF7 [128-587]T 0.0 PTHR19211:SF7 PTHR19211:SF7 PTHR19211:SF7
SSF47655 [566-616]T 0.015 SSF47655 STAT STAT
SSF52540 [6-239]T 2.2000000000000004E-50 SSF52540 SSF52540[317-577]T 4.1000000000000004E-44 SSF52540 SSF52540 SSF52540


COGS Summary:  COGS Search
BeTs to 10 clades of COG0488
COG name: ATPase components of ABC transporters with duplicated ATPase domains
Functional Class: R
The phylogenetic pattern of COG0488 is ----Y--CEBRHuj--olinx
Number of proteins in this genome belonging to this COG is 4
Blocks Summary:  Blocks Search
***** IPB001140 (ABC transporter transmembrane region) with a combined E-value of 2.8e-21.
    IPB001140A    331-377
    IPB001140B    435-473
    IPB001140C    487-516


 ProDom Summary:  Protein Domain Search
Residues 556-619 are 51% similar to a (ATP-BINDING ABC COMPLETE PROTEOME) protein domain (PD031335 which is seen in Q9CFC6_LACLA.

Residues 414-477 are 43% similar to a (ABC TRANSPORTER ABC-TRANSPORTER) protein domain (PD330281 which is seen in Q9F901_STRPN.

Residues 245-326 are 57% similar to a (ATP-BINDING ABC TRANSPORT TRANSPORTER) protein domain (PD331541 which is seen in Q9CFC6_LACLA.

Residues 249-331 are 40% similar to a (ATP-BINDING ABC PROTEOME TRANSPORTER) protein domain (PD005562 which is seen in O06476_BACSU.

Residues 381-437 are 63% similar to a (PROTEOME COMPLETE TRANSPORT TRANSPORTER) protein domain (PD019163 which is seen in Q9CFC6_LACLA.

Residues 435-480 are 52% similar to a (PROTEOME BINDING ATP-BINDING COMPLETE) protein domain (PD335182 which is seen in Q9X7B1_MYCLE.

Residues 327-380 are 53% similar to a (PROTEOME BINDING COMPLETE ABC) protein domain (PD382315 which is seen in Q9CFC6_LACLA.

Residues 297-371 are 34% similar to a (FIS FLJ11198 EAKLY CDNA:) protein domain (PD060943 which is seen in Q9H7A8_HUMAN.

Residues 483-526 are 61% similar to a (ATP-BINDING ABC TRANSPORTER PROTEOME COMPLETE REPEAT) protein domain (PD000796 which is seen in Q9CFC6_LACLA.

Residues 331-398 are 33% similar to a (ATP-BINDING PROTEOME COMPLETE ABC) protein domain (PD220985 which is seen in Q9KFD1_BACHD.

Residues 201-514 are 23% similar to a (ATP-BINDING ABC TRANSPORTER) protein domain (PD068705 which is seen in Q9ZC01_STRCO.

Residues 317-407 are 45% similar to a (PROTEOME TRANSPORTER ATP-BINDING COMPLETE) protein domain (PD245664 which is seen in Q9KBM6_BACHD.

Residues 419-508 are 38% similar to a (ATP-BINDING) protein domain (PD397028 which is seen in Q53712_STRAT.

Residues 69-144 are 48% similar to a (PROTEOME COMPLETE TRANSPORT TRANSPORTER) protein domain (PD337757 which is seen in Q9CFC6_LACLA.

Residues 420-481 are 40% similar to a (ATP-BINDING RESISTANCE PLASMID COMPLETE) protein domain (PD019698 which is seen in Q9ZKZ3_HELPJ.

Residues 1-68 are 66% similar to a (PROTEOME BINDING COMPLETE ABC) protein domain (PD387663 which is seen in Q9CFC6_LACLA.

Residues 335-375 are 56% similar to a (ATP-BINDING TRANSPORT ABC TRANSPORTER COMPLETE PROTEOME) protein domain (PD000005 which is seen in Q9HZI7_PSEAE.

Residues 438-480 are 90% similar to a (ATP-BINDING TRANSPORT ABC TRANSPORTER COMPLETE PROTEOME) protein domain (PD000006 which is seen in Q9CFC6_LACLA.


Paralogs:  Local Blast Search
SMu0823 is paralogously related (blast p-value < 1e-3) to SMu1306, SMu1959, SMu0729, SMu1757, SMu0390, SMu0418, SMu0849, SMu1410, SMu1288, SMu0907, SMu1920, SMu0731, SMu1518, SMu0258, SMu1064, SMu1710, SMu1762, SMu1001, SMu1316, SMu0944, SMu0517, SMu1003, SMu1023, SMu0335, SMu0218, SMu1724, SMu0594, SMu0164, SMu0024, SMu0786, SMu1751, SMu1093, SMu0234, SMu1811, SMu1079, SMu1950, SMu0884, SMu1380, SMu1517, SMu1068, SMu1428, SMu0805, SMu0235, SMu0986, SMu0825, SMu1210, SMu0596, SMu1065, SMu1246, SMu1231, SMu0824, SMu0987, SMu0916, SMu1649, SMu0374, SMu0216, SMu1949, SMu0950, SMu1036, SMu0475, SMu1545, SMu0224, SMu0971, SMu0837, SMu0976, SMu0836, SMu1037, SMu1202, SMu0752, SMu0476, SMu0666, and SMu1050 all with ATP-binding capabilities.


Pfam Summary:  Pfam Search
Residues 29 to 228 (E-value = 2.1e-37) place SMu0823 in the ABC_tran family which is described as ABC transporter (PF00005)
Residues 342 to 510 (E-value = 7.8e-30) place SMu0823 in the ABC_tran family which is described as ABC transporter (PF00005)

 Top PDB Hits:
No significant hits to the NCBI PDB database.

Gene Protein Sequence:
MSDFIVERLSKTVGDKTVFQNISFIIHDKDRIGIIGVNGTGKTTLLDVIS
GRLGFDGDNSPFSAKNDYKMAYLTQEPVFNETKTILDTVLSSDLREMQLI
HTYESFMANYDEANQEQLEKVMAEMDALDVWSIESEVKTVLSKLGISDLS
QKVGNLSGGLKRRVQLAQVLLNDADLLLLDEPTNHLDIDTIAWLANFLKN
SKKTVLFITHDRYFLDSIASRIFELDRAHLIEYQGNYQDYVRLRAEQDER
DAAALHKKKQLYKQELAWMRRQPQARATKQEARINRFKNLKSDLSGMDTS
SDLEINFQTSRIGKKVINFEQVDFAYPDKTILTHFNLLIQNKDRIGIVGE
NGVGKSTLLHLMNGDLQPNSGKLDIGETVRIGYFSQQIKDMDENKRVINY
LQEVADEVTTAVGISSVTSLLEQFLFPRSTHGTLISKLSGGEKKRLYLLK
ILIEKPNVLLLDEPTNDLDIATLTVLESFLQDFSGPVITVSHDRYFLDKV
ANKILAFEHNAIREFFGNYTDYLDEKAFEKDSSAMVVKKEAAKVEKEKSE
RKRMSYFEKQEWATIEDDITALEERIENIEATMQEHASDYGQLAGLQRDL
DTANEQLLEKYERYEYLSELEK

Gene Nucleotide Sequence:  Sequence Viewer
ATGAGTGATTTTATTGTTGAACGGTTAAGCAAAACAGTTGGCGATAAGAC
TGTCTTTCAGAATATTTCTTTTATTATCCATGATAAGGATCGTATTGGAA
TCATTGGTGTCAATGGGACTGGAAAGACCACTCTTCTTGATGTTATCTCT
GGTAGATTAGGATTTGATGGCGACAACTCACCTTTTTCTGCTAAAAACGA
CTATAAGATGGCTTATCTAACGCAAGAACCTGTTTTTAATGAGACGAAGA
CAATTCTTGATACAGTCTTGTCATCAGATTTGCGGGAAATGCAGCTCATT
CACACTTATGAATCGTTCATGGCCAATTATGATGAAGCTAATCAGGAGCA
ATTGGAAAAGGTTATGGCAGAAATGGATGCTCTAGATGTCTGGTCTATTG
AAAGTGAAGTCAAAACTGTTTTGTCTAAATTAGGGATTTCTGATTTATCG
CAAAAAGTTGGCAACCTGTCAGGCGGCTTGAAGCGGCGCGTGCAATTAGC
TCAGGTTTTACTAAATGATGCAGACTTGCTTTTGCTGGATGAGCCGACCA
ATCACCTTGATATTGATACCATTGCTTGGCTGGCTAATTTTTTAAAAAAC
AGCAAAAAAACGGTTCTTTTTATTACGCATGATCGCTATTTCTTGGACAG
TATTGCCAGCCGTATTTTTGAATTGGATAGGGCGCATTTGATTGAATATC
AGGGCAATTATCAAGATTATGTGCGCCTGCGTGCAGAACAGGATGAACGC
GACGCGGCAGCTTTACATAAGAAAAAGCAGCTCTACAAACAAGAACTGGC
TTGGATGCGTAGGCAGCCACAGGCGCGTGCGACAAAACAAGAAGCGCGTA
TCAATCGTTTTAAGAATTTAAAATCAGACTTATCTGGTATGGATACTTCT
TCTGATCTTGAAATCAATTTTCAAACCAGTCGTATCGGAAAAAAGGTTAT
CAATTTTGAACAGGTAGACTTTGCTTATCCCGATAAAACGATTTTGACAC
ATTTTAATTTACTCATTCAAAACAAAGACCGAATTGGCATTGTTGGCGAA
AATGGGGTTGGAAAATCAACTCTTTTACATTTAATGAATGGCGACTTGCA
GCCAAATTCTGGAAAGCTGGATATTGGTGAGACGGTTCGTATTGGCTACT
TCTCCCAGCAAATCAAAGATATGGACGAAAACAAGCGTGTGATTAACTAT
TTGCAGGAAGTGGCAGATGAGGTTACAACAGCTGTTGGGATAAGCAGTGT
GACTAGTCTCTTAGAGCAATTTCTCTTCCCGCGCTCAACACACGGAACAC
TTATTTCTAAGTTGTCAGGCGGTGAGAAGAAACGTCTTTATTTACTCAAA
ATCCTAATTGAAAAGCCCAATGTCTTGCTCTTAGATGAGCCGACCAACGA
CCTTGATATTGCGACTTTGACAGTTCTTGAGAGTTTCTTGCAGGATTTTT
CTGGTCCTGTCATTACGGTTAGTCATGACCGTTATTTTCTAGACAAAGTA
GCCAATAAAATCCTCGCTTTTGAACATAATGCCATCCGTGAATTTTTTGG
CAATTATACCGATTATTTAGATGAGAAAGCGTTTGAAAAAGACAGTTCTG
CCATGGTAGTCAAAAAAGAAGCAGCAAAGGTTGAGAAAGAAAAGTCAGAG
CGTAAACGTATGTCTTATTTTGAAAAGCAAGAATGGGCGACGATTGAAGA
TGATATAACAGCTTTAGAGGAAAGAATCGAAAACATTGAGGCGACCATGC
AGGAACATGCTTCAGATTATGGTCAGCTGGCTGGTTTGCAGCGTGATTTA
GATACTGCCAATGAGCAGCTCCTTGAAAAATATGAGCGTTATGAATACTT
GAGCGAACTGGAGAAATAA

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