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Streptococcus mutans Search Results

Record: 1 of 1  
MiniMap IGR200 IGR197 IGR201 IGR199 IGR195 IGR198 IGR196 IGR202 IGR194 mecA, - SMu0222 yurY, - SMu0224 bacA,uppP, - SMu0221 rgpG, - SMu0223 nifS, - SMu0226 SMu0225 SMu0220 SMu0228 mecA, - SMu0222 yurY, - SMu0224 bacA,uppP, - SMu0221 rgpG, - SMu0223 nifS, - SMu0226 SMu0225 SMu0220 SMu0228 mecA, - SMu0222 yurY, - SMu0224 bacA,uppP, - SMu0221 rgpG, - SMu0223 nifS, - SMu0226 SMu0225 SMu0220 SMu0228 nifU, - SMu0227 nifU, - SMu0227


LANL Gene ID: SMu0224

GenBank Locus Tag: SMU.247

DNA Molecule Name:
1  

GenBank ID:
24378756

Gene Name:
yurY  

Definition:
ABC transporter, ATP-binding protein

Cellular Location:
Cytoplasm, Membrane [Evidence]

Gene Start:
235806

Gene Stop:
236576

Gene Length:
771

Molecular Weight*:
28267

pI*:
4.40

Net Charge*:
-18.24

EC:
 

Functional Class:
Transport and binding proteins; ABC Superfamily: ATP-binding protein  

Gene Ontology:
Biological process
  GO:0006810    transport

Molecular function
  GO:0000166    nucleotide binding
  GO:0005524    ATP binding
  GO:0016887    ATPase activity
  GO:0017111    nucleoside-triphosphatase activity


Pathway: pathway table

Comment:



View in HOMD Genome Viewer

Blast Summary:  PSI-Blast Search
Numerous matches in gapped BLAST to ABC transporter, ATP-binding proteins. Residues 1-256 are 84% similar to gi15902815 from S.pneumoniae. REsidues 1-255 are 82% similar to gi15674460 from S.pyogenes.





The best hit to the Streptococcus agalactiae 2603 V/R genome is to SAG0141 (1e-122).


Top Blast Hits:  Updated monthly
Click here to view the entire PsiBlast results.
 gi|24378756|ref|NP_720711.1|  putative ABC transporter, ATP-...   452   e-126
 gi|22536326|ref|NP_687177.1|  ABC transporter, ATP-binding p...   425   e-117
 gi|55820262|ref|YP_138704.1|  ABC transporter ATP binding pr...   421   e-116
 gi|116627116|ref|YP_819735.1|  ABC-type transport system inv...   421   e-116
 gi|125718748|ref|YP_001035881.1|  ABC-type Fe-S cluster asse...   418   e-115
 gi|15900750|ref|NP_345354.1|  ABC transporter, ATP-binding p...   418   e-115
 gi|15902815|ref|NP_358365.1|  ABC transporter ATP-binding pr...   417   e-115
 gi|157075723|gb|ABV10406.1|  FeS assembly ATPase SufC [Strep...   417   e-115
 gi|148997054|ref|ZP_01824708.1|  FeS assembly ATPase SufC [S...   417   e-115
 gi|81097284|ref|ZP_00875581.1|  FeS assembly ATPase SufC [St...   417   e-115


InterPro Summary:  InterProScan

InterPro
IPR003439
Domain
ABC transporter related
PD000006 [147-177]T 0.0 PD000006 ABC_transporter ABC_transporter
PF00005 [29-222]T 2.70000183580768E-29 PF00005 ABC_tran ABC_tran
PS00211 [146-160]? 0.0 PS00211 ABC_TRANSPORTER_1 ABC_TRANSPORTER_1
PS50893 [4-246]T 0.0 PS50893 ABC_TRANSPORTER_2 ABC_TRANSPORTER_2
InterPro
IPR003593
Domain
AAA+ ATPase, core
SM00382 [28-230]T 7.40000000000006E-9 SM00382 AAA AAA
InterPro
IPR010230
Family
FeS assembly ATPase SufC
PTHR19222:SF6 [4-236]T 5.500017542664309E-112 PTHR19222:SF6 SufC SufC
TIGR01978 [4-244]T 0.0 TIGR01978 sufC sufC
noIPR
unintegrated
unintegrated
G3DSA:3.40.50.300 [3-231]T 1.9000069431527E-38 G3DSA:3.40.50.300 G3DSA:3.40.50.300 G3DSA:3.40.50.300
PTHR19222 [4-236]T 5.500017542664309E-112 PTHR19222 PTHR19222 PTHR19222
SSF53795 [16-244]T 1.4999999999999998E-47 SSF53795 SSF53795 SSF53795


COGS Summary:  COGS Search
BeTs to 11 clades of COG0396
COG name: Iron-regulated ABC transporter ATPase subunit SufC
Functional Class: R
The phylogenetic pattern of COG0396 is amtK--Vcebr------lin-
Number of proteins in this genome belonging to this COG is 1
Blocks Summary:  Blocks Search
***** IPB001140 (ABC transporter transmembrane region) with a combined E-value of 2.7e-15.
    IPB001140A    18-64
    IPB001140B    143-181
    IPB001140C    199-228


 ProDom Summary:  Protein Domain Search
Residues 75-145 are 49% similar to a (ATP-BINDING TRANSPORTER ATP-DEPENDENT) protein domain (PD006006 which is seen in Q9RSL7_DEIRA.

Residues 73-114 are 57% similar to a (TRANSPORTER ATP-BINDING PROTEOME COMPLETE) protein domain (PD345181 which is seen in ABCX_ANTSP.

Residues 189-241 are 79% similar to a (ATP-BINDING TRANSPORTER PROTEOME COMPLETE) protein domain (PD005991 which is seen in Q9CEP3_LACLA.

Residues 146-188 are 62% similar to a (PROTEOME COMPLETE) protein domain (PD240758 which is seen in Q9V0M5_PYRAB.

Residues 146-188 are 79% similar to a (ATP-BINDING TRANSPORTER PROTEOME SUFC) protein domain (PD195750 which is seen in Q9PDA4_XYLFA.

Residues 74-145 are 65% similar to a (ATP-BINDING TRANSPORTER PROTEOME COMPLETE) protein domain (PD374973 which is seen in Q9CEP3_LACLA.

Residues 19-72 are 77% similar to a (ATP-BINDING TRANSPORT ABC TRANSPORTER COMPLETE PROTEOME) protein domain (PD000005 which is seen in Q9CEP3_LACLA.

Residues 146-188 are 88% similar to a (ATP-BINDING TRANSPORT ABC TRANSPORTER COMPLETE PROTEOME) protein domain (PD000006 which is seen in V296_BACSU.


Paralogs:  Local Blast Search
SMu0224 is paralogously related (blast p-value < 1e-3) to SMu0731, SMu0218, SMu0517, SMu0235, SMu1380, SMu1757, SMu1949, SMu0884, SMu0825, SMu1079, SMu1036, SMu0216, SMu0849, SMu1003, SMu0786, SMu1518, SMu1037, SMu1649, SMu1410, SMu1762, SMu0986, SMu0418, SMu1023, SMu1950, SMu1246, SMu1231, SMu1065, SMu0476, SMu1920, SMu1710, SMu1517, SMu0374, SMu0837, SMu1064, SMu0390, SMu1316, SMu0944, SMu1306, SMu1210, SMu1001, SMu0836, SMu0594, SMu0258, SMu1751, SMu1545, SMu0907, SMu1811, SMu0596, SMu1093, SMu0824, SMu0475, SMu0164, SMu1959, SMu1068, SMu0234, SMu0971, SMu0335, SMu0916, SMu0823, SMu0976, SMu0805, SMu1288, SMu1724, SMu0950, SMu0024, SMu1428, SMu0729, SMu0666, SMu0987, and SMu0752, ABC-related ATP-binding proteins.


Pfam Summary:  Pfam Search
Residues 29 to 222 (E-value = 1.1e-32) place SMu0224 in the ABC_tran family which is described as ABC transporter (PF00005)

 Top PDB Hits:
pdb1B0UA Chain A, Atp-Binding Subunit Of The Histidine Permea... 68 2e-012

Gene Protein Sequence:
MSVLEIKDLHVSIEDKEILKGVNLTLKTGEIAAIMGPNGTGKSTLSAAIM
GNPIFEVTQGEILLDGENILEMEVDERARLGLFLAMQYPSEIPGITNAEF
IRAAMNAGKKDDEKISVRDFIMKLDEKMELLGMKEEMAERYLNEGFSGGE
KKRNEILQLLMLEPKFALLDEIDSGLDIDALKVVSKGVNAMRGEGFGAMI
ITHYQRLLNYITPDIVHVMMDGRVVLSGGPELAARLEKEGYAQIAEELGL
EYSEEV

Gene Nucleotide Sequence:  Sequence Viewer
ATGTCTGTACTTGAAATAAAAGATCTTCATGTCTCTATTGAAGATAAAGA
AATTTTAAAAGGTGTTAATCTGACCTTGAAAACAGGTGAAATTGCAGCCA
TTATGGGGCCTAACGGGACTGGGAAATCAACGCTTTCAGCAGCTATTATG
GGAAATCCCATTTTTGAAGTGACACAAGGAGAAATTTTACTTGACGGTGA
AAATATTTTGGAAATGGAAGTTGATGAGCGAGCTCGCTTAGGGCTTTTTC
TTGCCATGCAATATCCGTCTGAAATTCCAGGAATTACTAATGCAGAATTC
ATCCGTGCGGCAATGAATGCTGGTAAGAAAGATGATGAGAAGATTTCTGT
TCGTGATTTTATCATGAAACTGGATGAAAAAATGGAATTGCTGGGTATGA
AAGAAGAAATGGCAGAGCGCTACCTTAACGAAGGCTTTTCTGGTGGTGAG
AAAAAACGCAATGAAATCTTGCAATTACTGATGTTAGAGCCTAAATTTGC
CCTTCTCGATGAAATTGACTCTGGCCTTGATATTGATGCCCTTAAGGTCG
TTTCTAAGGGAGTTAATGCCATGCGTGGTGAAGGCTTTGGTGCTATGATT
ATTACCCACTACCAACGTCTGCTTAATTACATCACACCAGATATTGTTCA
TGTTATGATGGATGGTCGTGTTGTATTATCTGGCGGACCAGAGCTGGCAG
CTCGACTCGAAAAAGAAGGTTATGCCCAAATCGCTGAAGAACTCGGTCTT
GAATACAGCGAAGAAGTCTAA

Los Alamos National Laboratory • Est 1943

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