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Streptococcus mutans Search Results

Record: 1 of 1  
MiniMap IGR1039 IGR1035 IGR1042 IGR1041 IGR1037 IGR1036 IGR1040 SMu1204 SMu1202 SMu1205 SMu1203 butA, - SMu1207 SMu1206 aspB,aspC, - SMu1199 dinG, - SMu1200 SMu1201 SMu1204 SMu1202 SMu1205 SMu1203 butA, - SMu1207 SMu1206 aspB,aspC, - SMu1199 dinG, - SMu1200 SMu1201 SMu1202 SMu1205 SMu1203 butA, - SMu1207 SMu1206 aspB,aspC, - SMu1199 dinG, - SMu1200 SMu1204 SMu1201


LANL Gene ID: SMu1202

GenBank Locus Tag: SMU.1315c

DNA Molecule Name:
1  

GenBank ID:
24379731

Gene Name:


Definition:
ABC transporter, ATP-binding protein

Cellular Location:
Cytoplasm [Evidence]

Gene Start:
1242309

Gene Stop:
1241656

Gene Length:
654

Molecular Weight*:
25102

pI*:
5.10

Net Charge*:
-6.56

EC:
 

Functional Class:
Transport and binding proteins; ABC Superfamily: ATP-binding protein  

Gene Ontology:
Molecular function
  GO:0000166    nucleotide binding
  GO:0005524    ATP binding
  GO:0016887    ATPase activity
  GO:0017111    nucleoside-triphosphatase activity


Pathway: pathway table

Comment:
For other components see SMu1203 (MSD1).

View in HOMD Genome Viewer

Blast Summary:  PSI-Blast Search
This sequence corresponds to the previously sequenced 5918764| in GenBank, predicted MutT from S.mutans

Matches in gapped BLAST to ABC transporter (ATP-binding protein) : residues 1-199 are 26% similar to 15926900| from S.aureus.Residues 1-195 are 23% similar to 16804811| from Listeria monocytogenes





The best hit to the Streptococcus agalactiae 2603 V/R genome is to SAG2027 (1e-08).


Top Blast Hits:  Updated monthly
Click here to view the entire PsiBlast results.
 gi|24379731|ref|NP_721686.1|  putative ATP-binding protein [...   384   e-105
 gi|116333698|ref|YP_795225.1|  ABC-type cobalt transport sys...   116   9e-25
 gi|111610186|gb|ABH11581.1|  ABC transporter ATP-binding pro...    74   5e-12
 gi|116618022|ref|YP_818393.1|  ABC-type cobalt transport sys...    74   7e-12
 gi|157019211|gb|EAA45245.4|  AGAP009471-PA [Anopheles gambia...    67   6e-10
 gi|157119322|ref|XP_001653354.1|  abc transporter [Aedes aeg...    67   9e-10
 gi|90962778|ref|YP_536693.1|  ABC transporter, ATP-binding p...    66   2e-09
 gi|118780561|ref|XP_310228.3|  ENSANGP00000022879 [Anopheles...    65   3e-09
 gi|76801538|ref|YP_326546.1|  ABC-type transport system ATP-...    64   5e-09
 gi|14591275|ref|NP_143352.1|  transport protein [Pyrococcus ...    64   7e-09


InterPro Summary:  InterProScan

InterPro
IPR003439
Domain
ABC transporter related
PF00005 [25-192]T 2.10000037262654E-8 PF00005 ABC_tran ABC_tran
PS50893 [1-216]T 0.0 PS50893 ABC_TRANSPORTER_2 ABC_TRANSPORTER_2
InterPro
IPR003593
Domain
AAA+ ATPase, core
SM00382 [25-200]T 0.00839999999999997 SM00382 AAA AAA
noIPR
unintegrated
unintegrated
G3DSA:3.40.50.300 [1-207]T 3.6000043396593304E-22 G3DSA:3.40.50.300 G3DSA:3.40.50.300 G3DSA:3.40.50.300
PTHR19222 [1-204]T 1.80000149287192E-14 PTHR19222 PTHR19222 PTHR19222
PTHR19222:SF4 [1-204]T 1.80000149287192E-14 PTHR19222:SF4 PTHR19222:SF4 PTHR19222:SF4
SSF52540 [3-202]T 1.9E-31 SSF52540 SSF52540 SSF52540


COGS Summary:  COGS Search
BeTs to 6 clades of COG1131
COG name: ABC-type multidrug transport system, ATPase component
Functional Class: R
The phylogenetic pattern of COG1131 is AmTKy-VCEBR-uJ-pol--x
Number of proteins in this genome belonging to this COG is 14
Blocks Summary:  Blocks Search
***** IPB001140 (ABC transporter transmembrane region) with a combined E-value of 2.6e-07.
    IPB001140A    15-61
    IPB001140B    114-152
    IPB001140C    169-198


 ProDom Summary:  Protein Domain Search
No significant hits to the ProDom database.

Paralogs:  Local Blast Search
SMu1202 is paralogously related (blast p-value < 1e-3) to SMu0849, SMu1068, SMu1001, SMu1093, SMu1023, SMu0731, SMu1410, SMu1288, SMu0944, SMu0218, SMu0164, SMu1920, SMu1380, SMu0517, SMu0418, SMu0390, SMu0374, SMu1751, SMu1757, SMu0823, SMu0825, SMu1949, SMu0916, SMu0976, SMu1064, SMu0752, SMu1079, SMu1959, SMu1037, SMu0884, SMu0596, SMu0476, SMu0666, SMu1517, SMu1316, SMu0729, SMu0235, SMu0907, SMu0986, and SMu1545, all ATP-binding proteins.


Pfam Summary:  Pfam Search
Residues 25 to 192 (E-value = 4.3e-13) place SMu1202 in the ABC_tran family which is described as ABC transporter (PF00005)

 Top PDB Hits:
No significant hits to the NCBI PDB database.

Gene Protein Sequence:
MQIKDFNLKINQQLLLDNVSMSFANQKLNLIIGRNGVGKTLLLDLISDLD
HNRPENFHDFPKNSRIIYHSQGLPFIAEATVKDTITLIGDLSEDSAITME
HLPQKIRNNLNKPFGSLSMGERRYLTIWLFLQIERDLYIFDEPFANLDLS
VISDILSLFYDKLDQGKQLIITSHQFDFLVPEKTQIIFIEDKQIKFNDSL
TAFLAYYHSFGQAFDIQ

Gene Nucleotide Sequence:  Sequence Viewer
ATGCAGATCAAAGATTTTAATTTAAAAATAAATCAGCAGTTATTATTGGA
TAATGTCAGTATGTCCTTTGCCAATCAAAAATTAAATCTTATTATCGGTA
GAAATGGTGTAGGAAAGACACTGTTATTGGATTTAATTTCTGACTTAGAC
CATAATAGACCTGAAAATTTTCACGATTTTCCTAAGAATAGTCGAATTAT
TTATCATAGTCAAGGCTTACCCTTTATTGCAGAGGCCACTGTAAAAGATA
CAATAACTTTAATTGGAGATTTGTCCGAGGATAGTGCTATCACAATGGAG
CACCTTCCTCAAAAAATTAGAAATAATTTGAATAAACCTTTTGGTTCCTT
GTCTATGGGAGAGCGCAGGTATTTGACCATCTGGTTATTTTTGCAAATCG
AAAGAGACTTATATATTTTCGACGAACCGTTTGCTAATTTGGATCTCAGT
GTTATCTCTGATATCTTGAGTCTCTTTTATGATAAACTTGATCAAGGAAA
GCAGTTAATCATCACCTCTCATCAATTTGACTTTTTGGTTCCTGAAAAAA
CACAAATCATTTTTATTGAGGACAAACAAATCAAATTTAATGATAGTCTT
ACAGCTTTTTTAGCCTATTATCATTCATTTGGTCAAGCTTTTGATATACA
ATAG

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