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Volume 13(7);  July 2004
Review
De novo proteins from designed combinatorial libraries
Michael H. Hecht, Aditi Das, Abigail Go, Luke H. Bradley, and Yinan Wei
Protein Sci. 2004 July; 13(7): 1711–1723. doi: 10.1110/ps.04690804.
PMCID: PMC2279937
Articles
Crystal structure of rat α-parvalbumin at 1.05 Å resolution
Christopher A. Bottoms, Jonathan P. Schuermann, Sayeh Agah, Michael T. Henzl, and John J. Tanner
Protein Sci. 2004 July; 13(7): 1724–1734. doi: 10.1110/ps.03571004.
PMCID: PMC2279919
Determinants of quaternary association in legume lectins
K.V. Brinda, Nivedita Mitra, Avadhesha Surolia, and Saraswathi Vishveshwara
Protein Sci. 2004 July; 13(7): 1735–1749. doi: 10.1110/ps.04651004.
PMCID: PMC2279936
The effects of nonnative interactions on protein folding rates: Theory and simulation
Cecilia Clementi and Steven S. Plotkin
Protein Sci. 2004 July; 13(7): 1750–1766. doi: 10.1110/ps.03580104.
PMCID: PMC2279923
Biophysical characterization of the free IκBα ankyrin repeat domain in solution
Carrie Hughes Croy, Simon Bergqvist, Tom Huxford, Gourisankar Ghosh, and Elizabeth A. Komives
Protein Sci. 2004 July; 13(7): 1767–1777. doi: 10.1110/ps.04731004.
PMCID: PMC2279933
Solubilization and delivery by GroEL of megadalton complexes of the λ holin
John Deaton, Christos G. Savva, Jingchuan Sun, Andreas Holzenburg, Joel Berry, and Ry Young
Protein Sci. 2004 July; 13(7): 1778–1786. doi: 10.1110/ps.04735104.
PMCID: PMC2279943
Analysis of the “thermodynamic information content” of a Homo sapiens structural database reveals hierarchical thermodynamic organization
Scott A. Larson and Vincent J. Hilser
Protein Sci. 2004 July; 13(7): 1787–1801. doi: 10.1110/ps.04706204.
PMCID: PMC2279918
Removal of N-terminal methionine from recombinant proteins by engineered E. coli methionine aminopeptidase
You-Di Liao, Jen-Chong Jeng, Chiu-Feng Wang, Sui-Chi Wang, and Shu-Ting Chang
Protein Sci. 2004 July; 13(7): 1802–1810. doi: 10.1110/ps.04679104.
PMCID: PMC2279930
Trapping a 96° domain rotation in two distinct conformations by engineered disulfide bridges
Robert Schultz-Heienbrok, Timm Maier, and Norbert Sträter
Protein Sci. 2004 July; 13(7): 1811–1822. doi: 10.1110/ps.04629604.
PMCID: PMC2279917
Protein simulations: The absorption spectrum of barnase point mutants
Ken R.F. Somers, Peter Krüger, Sylwia Bucikiewicz, Marc De Maeyer, Yves Engelborghs, and Arnout Ceulemans
Protein Sci. 2004 July; 13(7): 1823–1831. doi: 10.1110/ps.04652804.
PMCID: PMC2279920
Structural conservation in the major facilitator superfamily as revealed by comparative modeling
Eyal Vardy, Isaiah T. Arkin, Kay E. Gottschalk, H. Ronald Kaback, and Shimon Schuldiner
Protein Sci. 2004 July; 13(7): 1832–1840. doi: 10.1110/ps.04657704.
PMCID: PMC2279927
Database searching by flexible protein structure alignment
Yuzhen Ye and Adam Godzik
Protein Sci. 2004 July; 13(7): 1841–1850. doi: 10.1110/ps.03602304.
PMCID: PMC2279924
Monoclonal antibodies assisting refolding of firefly luciferase
Qin Xu, Zhiqun Xie, Jianfang Ding, Sheng-Xiang Lin, and Genjun Xu
Protein Sci. 2004 July; 13(7): 1851–1858. doi: 10.1110/ps.04699904.
PMCID: PMC2279935
The human serpin proteinase inhibitor-9 self-associates at physiological temperatures
Lauren N. Benning, James C. Whisstock, Jiuru Sun, Phillip I. Bird, and Stephen P. Bottomley
Protein Sci. 2004 July; 13(7): 1859–1864. doi: 10.1110/ps.04715304.
PMCID: PMC2279926
Structural alignment of proteins by a novel TOPOFIT method, as a superimposition of common volumes at a topomax point
Valentin A. Ilyin, Alexej Abyzov, and Chesley M. Leslin
Protein Sci. 2004 July; 13(7): 1865–1874. doi: 10.1110/ps.04672604.
PMCID: PMC2279929
Identification of active site residues in mevalonate diphosphate decarboxylase: Implications for a family of phosphotransferases
Dmitriy Krepkiy and Henry M. Miziorko
Protein Sci. 2004 July; 13(7): 1875–1881. doi: 10.1110/ps.04725204.
PMCID: PMC2279928
Affinity transfer by CDR grafting on a nonimmunoglobulin scaffold
Magali Nicaise, Marielle Valerio-Lepiniec, Philippe Minard, and Michel Desmadril
Protein Sci. 2004 July; 13(7): 1882–1891. doi: 10.1110/ps.03540504.
PMCID: PMC2279932
Unassisted refolding of urea-denatured arginine kinase from shrimp Feneropenaeus chinensis: Evidence for two equilibrium intermediates in the refolding pathway
Ji-Cheng Pan, Zhenhang Yu, Xiao-Yang Su, Ye-Qing Sun, Xue-Ming Rao, and Hai-Meng Zhou
Protein Sci. 2004 July; 13(7): 1892–1901. doi: 10.1110/ps.03464804.
PMCID: PMC2279925
Zinc-dependent dimerization of the folding catalyst, protein disulfide isomerase
Anton Solovyov and Hiram F. Gilbert
Protein Sci. 2004 July; 13(7): 1902–1907. doi: 10.1110/ps.04716104.
PMCID: PMC2279941
Best α-helical transmembrane protein topology predictions are achieved using hidden Markov models and evolutionary information
Håkan Viklund and Arne Elofsson
Protein Sci. 2004 July; 13(7): 1908–1917. doi: 10.1110/ps.04625404.
PMCID: PMC2279939
Facile chemical synthesis and equilibrium unfolding properties of CopG
Thomas E. Wales, Jane S. Richardson, and Michael C. Fitzgerald
Protein Sci. 2004 July; 13(7): 1918–1926. doi: 10.1110/ps.04671804.
PMCID: PMC2279938
For the Record
Insulin forms amyloid in a strain-dependent manner: An FT-IR spectroscopic study
Wojciech Dzwolak, Vytautas Smirnovas, Ralf Jansen, and Roland Winter
Protein Sci. 2004 July; 13(7): 1927–1932. doi: 10.1110/ps.03607204.
PMCID: PMC2279922
Observation of sequence specificity in the seeding of protein amyloid fibrils
Mark R.H. Krebs, Ludmilla A. Morozova-Roche, Katie Daniel, Carol V. Robinson, and Christopher M. Dobson
Protein Sci. 2004 July; 13(7): 1933–1938. doi: 10.1110/ps.04707004.
PMCID: PMC2279934
The role of aromaticity, exposed surface, and dipole moment in determining protein aggregation rates
Gian Gaetano Tartaglia, Andrea Cavalli, Riccardo Pellarin, and Amedeo Caflisch
Protein Sci. 2004 July; 13(7): 1939–1941. doi: 10.1110/ps.04663504.
PMCID: PMC2279921
The C-terminal domain of full-length E. coli SSB is disordered even when bound to DNA
Savvas N. Savvides, Srinivasan Raghunathan, Klaus Fütterer, Alex G. Kozlov, Timothy M. Lohman, and Gabriel Waksman
Protein Sci. 2004 July; 13(7): 1942–1947. doi: 10.1110/ps.04661904.
PMCID: PMC2279931
The progress of membrane protein structure determination
Stephen H. White
Protein Sci. 2004 July; 13(7): 1948–1949. doi: 10.1110/ps.04712004.
PMCID: PMC2279940
Book Review
Analysing gene expression, edited by S. Lorkowski and P. Cullen.: 2003. Weinheim, Germany: Wiley-VCH. $335.
Erwan Le Jeune and Andreas G. Ladurner
Protein Sci. 2004 July; 13(7): 1950–1952. doi: 10.1110/ps.04753404.
PMCID: PMC2279942
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