| | This journal provides immediate access to some articles. Commentary NMR provides evidence for dynamic hydrogen bonding in proteins Martin Blackledge PMCID: PMC2206700 Articles Threading a peptide through a peptide: Protein loops, rotaxanes, and knots John W. Blankenship and Philip E. Dawson PMCID: PMC2206686 o-Nitrotyrosine and p-iodophenylalanine as spectroscopic probes for structural characterization of SH3 complexes Vincenzo De Filippis, Annamaria Draghi, Roberta Frasson, Claudio Grandi, Valeria Musi, Angelo Fontana, and Annalisa Pastore PMCID: PMC2206685 Using surface envelopes to constrain molecular modeling Jonathan M. Dugan and Russ B. Altman PMCID: PMC2206696 The three-dimensional crystal structure of the PrpF protein of Shewanella oneidensis complexed with trans-aconitate: Insights into its biological function Graeme S. Garvey, Christopher J. Rocco, Jorge C. Escalante-Semerena, and Ivan Rayment PMCID: PMC2206708 The 2.2 Å resolution crystal structure of Bacillus cereus Nif3-family protein YqfO reveals a conserved dimetal-binding motif and a regulatory domain Michael H. Godsey, George Minasov, Ludmilla Shuvalova, Joseph S. Brunzelle, Ivan I. Vorontsov, Frank R. Collart, and Wayne F. Anderson PMCID: PMC2206684 IRECS: A new algorithm for the selection of most probable ensembles of side-chain conformations in protein models Christoph Hartmann, Iris Antes, and Thomas Lengauer PMCID: PMC2206697 The crystal structure of the tumor suppressor protein pp32 (Anp32a): Structural insights into Anp32 family of proteins Trevor Huyton and Cynthia Wolberger PMCID: PMC2206682 NMR structure of a KlbA intein precursor from Methanococcus jannaschii Margaret A. Johnson, Maurice W. Southworth, Torsten Herrmann, Lear Brace, Francine B. Perler, and Kurt Wüthrich PMCID: PMC2206692 Solvent-induced differentiation of protein backbone hydrogen bonds in calmodulin Nenad Juranić, Elena Atanasova, John H. Streiff, Slobodan Macura, and Franklyn G. Prendergast PMCID: PMC2206704 Structural and biochemical characterization of a novel Mn2+-dependent phosphodiesterase encoded by the yfcE gene Darcie J. Miller, Ludmilla Shuvalova, Elena Evdokimova, Alexei Savchenko, Alexander F. Yakunin, and Wayne F. Anderson PMCID: PMC2206680 Configurational entropy elucidates the role of salt-bridge networks in protein thermostability John H. Missimer, Michel O. Steinmetz, Riccardo Baron, Fritz K. Winkler, Richard A. Kammerer, Xavier Daura, and Wilfred F. van Gunsteren PMCID: PMC2206687 Crystal structures of TM0549 and NE1324—two orthologs of E. coli AHAS isozyme III small regulatory subunit Janusz J. Petkowski, Maksymilian Chruszcz, Matthew D. Zimmerman, Heping Zheng, Tatiana Skarina, Olena Onopriyenko, Marcin T. Cymborowski, Katarzyna D. Koclega, Alexei Savchenko, Aled Edwards, and Wladek Minor PMCID: PMC2206681 Kinetic and structural analysis of a bacterial protein tyrosine phosphatase-like myo-inositol polyphosphatase Aaron A. Puhl, Robert J. Gruninger, Ralf Greiner, Timothy W. Janzen, Steven C. Mosimann, and L. Brent Selinger PMCID: PMC2206706 Active site geometry of glucose-1-phosphate uridylyltransferase James B. Thoden and Hazel M. Holden PMCID: PMC2206702 ‘Crystal lattice engineering,’ an approach to engineer protein crystal contacts by creating intermolecular symmetry: Crystallization and structure determination of a mutant human RNase 1 with a hydrophobic interface of leucines Hidenori Yamada, Taro Tamada, Megumi Kosaka, Kohei Miyata, Shinya Fujiki, Masaru Tano, Masayuki Moriya, Mamoru Yamanishi, Eijiro Honjo, Hiroko Tada, Takeshi Ino, Hiroshi Yamaguchi, Junichiro Futami, Masaharu Seno, Takashi Nomoto, Tomoko Hirata, Motonobu Yoshimura, and Ryota Kuroki PMCID: PMC2206683 Long-range side-chain–main-chain interactions play crucial roles in stabilizing the (βα)8 barrel motif of the alpha subunit of tryptophan synthase Xiaoyan Yang, Ramakrishna Vadrevu, Ying Wu, and C. Robert Matthews PMCID: PMC2206699 Nonbonded terms extrapolated from nonlocal knowledge-based energy functions improve error detection in near-native protein structure models Evandro Ferrada and Francisco Melo PMCID: PMC2206707 A high-throughput method for membrane protein solubility screening: The ultracentrifugation dispersity sedimentation assay Daniel A.P. Gutmann, Eiichi Mizohata, Simon Newstead, Sebastian Ferrandon, Peter J.F. Henderson, Hendrik W. van Veen, and Bernadette Byrne PMCID: PMC2206705 An experimental study of GFP-based FRET, with application to intrinsically unstructured proteins Tomoo Ohashi, Stephane D. Galiacy, Gina Briscoe, and Harold P. Erickson PMCID: PMC2206698 Significance of mutations on the structural perturbation of thymidylate synthase: Implications for their involvement in subunit exchange Ruth L. Saxl, Gladys F. Maley, Charles R. Hauer, Robert Maccoll, Liming Changchien, and Frank Maley PMCID: PMC2206691 OPUS-Ca: A knowledge-based potential function requiring only Cα positions Yinghao Wu, Mingyang Lu, Mingzhi Chen, Jialin Li, and Jianpeng Ma PMCID: PMC2206690 Protein Structure Reports Chemical cross-linking of the chloroplast localized small heat-shock protein, Hsp21, and the model substrate citrate synthase Emma Åhrman, Wietske Lambert, J. Andrew Aquilina, Carol V. Robinson, and Cecilia Sundby Emanuelsson PMCID: PMC2206695 Solution structure of a membrane-anchored ubiquitin-fold (MUB) protein from Homo sapiens Norberto B. de la Cruz, Francis C. Peterson, Betsy L. Lytle, and Brian F. Volkman PMCID: PMC2206703 Crystallographic studies of the complexes of antiviral protein griffithsin with glucose and N-acetylglucosamine Natasza E. Ziółkowska, Shilpa R. Shenoy, Barry R. O'Keefe, and Alexander Wlodawer PMCID: PMC2206701 For the Record An artificially evolved albumin binding module facilitates chemical shift epitope mapping of GA domain interactions with phylogenetically diverse albumins Yanan He, Yihong Chen, David A. Rozak, Philip N. Bryan, and John Orban PMCID: PMC2206689 Influence of hPin1 WW N-terminal domain boundaries on function, protein stability, and folding Marcus Jäger, Houbi Nguyen, Maria Dendle, Martin Gruebele, and Jeffery W. Kelly PMCID: PMC2206688 Functional structure of the somatomedin B domain of vitronectin Aiwu Zhou PMCID: PMC2206693 In Memoriam Richard V. Eck (1922–2006): Bioinformatics: In the beginning John Lee PMCID: PMC2206694 |
