| | Correspondence Coping with Viral Diversity in HIV Vaccine Design: A Response to Nickle et al Will Fischer, H. X Liao, Barton F Haynes, Norman L Letvin, and Bette Korber PLoS Comput Biol. 2008 January; 4(1): e15. Published online 2008 January 25. doi: 10.1371/journal.pcbi.0040015.PMCID: PMC2217576 Comparison of Immunogen Designs That Optimize Peptide Coverage: Reply to Fischer et al David C Nickle, Nebojsa Jojic, David Heckerman, Vladimir Jojic, Darko Kirovski, Morgane Rolland, Sergei Kosakovsky Pond, and James I Mullins PLoS Comput Biol. 2008 January; 4(1): e25. Published online 2008 January 25. doi: 10.1371/journal.pcbi.0040025.PMCID: PMC2217581 Education Strategies for Identifying RNA Splicing Regulatory Motifs and Predicting Alternative Splicing Events Dirk Holste and Uwe Ohler PLoS Comput Biol. 2008 January; 4(1): e21. Published online 2008 January 25. doi: 10.1371/journal.pcbi.0040021.PMCID: PMC2217580 Message from ISCB Getting Started in Text Mining K. Bretonnel Cohen and Lawrence Hunter PLoS Comput Biol. 2008 January; 4(1): e20. Published online 2008 January 25. doi: 10.1371/journal.pcbi.0040020.PMCID: PMC2217579 Research Articles Chemotaxis in Escherichia coli: A Molecular Model for Robust Precise Adaptation Clinton H Hansen, Robert G Endres, and Ned S Wingreen PLoS Comput Biol. 2008 January; 4(1): e1. Prepublished online 2007 November 20. Published online 2008 January 4. doi: 10.1371/journal.pcbi.0040001.PMCID: PMC2174977 Genes and (Common) Pathways Underlying Drug Addiction Chuan-Yun Li, Xizeng Mao, and Liping Wei PLoS Comput Biol. 2008 January; 4(1): e2. Prepublished online 2007 November 20. Published online 2008 January 4. doi: 10.1371/journal.pcbi.0040002.PMCID: PMC2174978 A Generic Mechanism for Adaptive Growth Rate Regulation Chikara Furusawa and Kunihiko Kaneko PLoS Comput Biol. 2008 January; 4(1): e3. Published online 2008 January 11. doi: 10.1371/journal.pcbi.0040003.PMCID: PMC2186362 In Silico Detection of Sequence Variations Modifying Transcriptional Regulation Malin C Andersen, Pär G Engström, Stuart Lithwick, David Arenillas, Per Eriksson, Boris Lenhard, Wyeth W Wasserman, and Jacob Odeberg PLoS Comput Biol. 2008 January; 4(1): e5. Prepublished online 2007 November 27. Published online 2008 January 18. doi: 10.1371/journal.pcbi.0040005.PMCID: PMC2211530 Evolution and Selection in Yeast Promoters: Analyzing the Combined Effect of Diverse Transcription Factor Binding Sites Daniela Raijman, Ron Shamir, and Amos Tanay PLoS Comput Biol. 2008 January; 4(1): e7. Published online 2008 January 11. doi: 10.1371/journal.pcbi.0040007.PMCID: PMC2186363 Noise Propagation and Signaling Sensitivity in Biological Networks: A Role for Positive Feedback Gil Hornung and Naama Barkai PLoS Comput Biol. 2008 January; 4(1): e8. Prepublished online 2007 December 5. Published online 2008 January 4. doi: 10.1371/journal.pcbi.0040008.PMCID: PMC2174979 A Quantitative Study of the Division Cycle of Caulobacter crescentus Stalked Cells Shenghua Li, Paul Brazhnik, Bruno Sobral, and John J Tyson PLoS Comput Biol. 2008 January; 4(1): e9. Prepublished online 2007 December 5. Published online 2008 January 25. doi: 10.1371/journal.pcbi.0040009.PMCID: PMC2217572 Matt: Local Flexibility Aids Protein Multiple Structure Alignment Matthew Menke, Bonnie Berger, and Lenore Cowen PLoS Comput Biol. 2008 January; 4(1): e10. Published online 2008 January 11. doi: 10.1371/journal.pcbi.0040010.PMCID: PMC2186361 Neuronal Firing Sensitivity to Morphologic and Active Membrane Parameters Christina M Weaver and Susan L Wearne PLoS Comput Biol. 2008 January; 4(1): e11. Prepublished online 2007 December 10. Published online 2008 January 18. doi: 10.1371/journal.pcbi.0040011.PMCID: PMC2211531 Genomic Sequence Is Highly Predictive of Local Nucleosome Depletion Guo-Cheng Yuan and Jun S Liu PLoS Comput Biol. 2008 January; 4(1): e13. Prepublished online 2007 December 13. Published online 2008 January 25. doi: 10.1371/journal.pcbi.0040013.PMCID: PMC2211532 Superhelical Destabilization in Regulatory Regions of Stress Response Genes Huiquan Wang and Craig J Benham PLoS Comput Biol. 2008 January; 4(1): e17. Published online 2008 January 18. doi: 10.1371/journal.pcbi.0040017.PMCID: PMC2211533 Mechanics of Channel Gating of the Nicotinic Acetylcholine Receptor Xinli Liu, Yechun Xu, Honglin Li, Xicheng Wang, Hualiang Jiang, and Francisco J Barrantes PLoS Comput Biol. 2008 January; 4(1): e19. Published online 2008 January 25. doi: 10.1371/journal.pcbi.0040019.PMCID: PMC2211534 Co-Regulation of Metabolic Genes Is Better Explained by Flux Coupling Than by Network Distance Richard A Notebaart, Bas Teusink, Roland J Siezen, and Balázs Papp PLoS Comput Biol. 2008 January; 4(1): e26. Published online 2008 January 25. doi: 10.1371/journal.pcbi.0040026.PMCID: PMC2211535 Why is Real-World Visual Object Recognition Hard? Nicolas Pinto, David D Cox, and James J DiCarlo PLoS Comput Biol. 2008 January; 4(1): e27. Published online 2008 January 25. doi: 10.1371/journal.pcbi.0040027.PMCID: PMC2211529 |