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Volume 3(6);  June 2007
Education
Machine Learning and Its Applications to Biology
Adi L Tarca, Vincent J Carey, Xue-wen Chen, Roberto Romero, and Sorin Drăghici
PLoS Comput Biol. 2007 June; 3(6): e116. Published online 2007 June 29. doi: 10.1371/journal.pcbi.0030116.
PMCID: PMC1904382
Message from ISCB
ISCB Honors Temple F. Smith and Eran Segal
Merry Maisel
PLoS Comput Biol. 2007 June; 3(6): e128. Published online 2007 June 29. doi: 10.1371/journal.pcbi.0030128.
PMCID: PMC1904388
The International Society for Computational Biology 10th Anniversary
Lawrence Hunter, Russ B Altman, and Philip E Bourne
PLoS Comput Biol. 2007 June; 3(6): e135. Published online 2007 June 29. doi: 10.1371/journal.pcbi.0030135.
PMCID: PMC1904389
Perspectives
A View from the Dark Side
David B Searls
PLoS Comput Biol. 2007 June; 3(6): e105. Published online 2007 June 29. doi: 10.1371/journal.pcbi.0030105.
PMCID: PMC1904373
Research Articles
Hierarchical Processing of Auditory Objects in Humans
Sukhbinder Kumar, Klaas E Stephan, Jason D Warren, Karl J Friston, and Timothy D Griffiths
PLoS Comput Biol. 2007 June; 3(6): e100. Prepublished online 2007 April 20. Published online 2007 June 1. doi: 10.1371/journal.pcbi.0030100.
PMCID: PMC1885275
Cell Surface Receptors for Signal Transduction and Ligand Transport: A Design Principles Study
Harish Shankaran, Haluk Resat, and H. Steven Wiley
PLoS Comput Biol. 2007 June; 3(6): e101. Prepublished online 2007 April 20. Published online 2007 June 1. doi: 10.1371/journal.pcbi.0030101.
PMCID: PMC1885276
Bottleneck Genes and Community Structure in the Cell Cycle Network of S. pombe
Cécile Caretta-Cartozo, Paolo De Los Rios, Francesco Piazza, and Pietro Liò
PLoS Comput Biol. 2007 June; 3(6): e103. Published online 2007 June 1. doi: 10.1371/journal.pcbi.0030103.
PMCID: PMC1885277
A Survey of Genomic Properties for the Detection of Regulatory Polymorphisms
Stephen B Montgomery, Obi L Griffith, Johanna M Schuetz, Angela Brooks-Wilson, and Steven J. M Jones
PLoS Comput Biol. 2007 June; 3(6): e106. Prepublished online 2007 April 25. Published online 2007 June 8. doi: 10.1371/journal.pcbi.0030106.
PMCID: PMC1892352
In Search of the Biological Significance of Modular Structures in Protein Networks
Zhi Wang and Jianzhi Zhang
PLoS Comput Biol. 2007 June; 3(6): e107. Prepublished online 2007 April 30. Published online 2007 June 1. doi: 10.1371/journal.pcbi.0030107.
PMCID: PMC1885274
A Mass Conserved Reaction–Diffusion System Captures Properties of Cell Polarity
Mikiya Otsuji, Shuji Ishihara, Carl Co, Kozo Kaibuchi, Atsushi Mochizuki, and Shinya Kuroda
PLoS Comput Biol. 2007 June; 3(6): e108. Prepublished online 2007 April 30. Published online 2007 June 8. doi: 10.1371/journal.pcbi.0030108.
PMCID: PMC1892603
Modeling Systems-Level Regulation of Host Immune Responses
Juilee Thakar, Mylisa Pilione, Girish Kirimanjeswara, Eric T Harvill, and Réka Albert
PLoS Comput Biol. 2007 June; 3(6): e109. Prepublished online 2007 April 30. Published online 2007 June 8. doi: 10.1371/journal.pcbi.0030109.
PMCID: PMC1892604
CpG Island Mapping by Epigenome Prediction
Christoph Bock, Jörn Walter, Martina Paulsen, and Thomas Lengauer
PLoS Comput Biol. 2007 June; 3(6): e110. Prepublished online 2007 May 2. Published online 2007 June 8. doi: 10.1371/journal.pcbi.0030110.
PMCID: PMC1892605
The Effect of Stochasticity on the Lac Operon: An Evolutionary Perspective
Milan van Hoek and Paulien Hogeweg
PLoS Comput Biol. 2007 June; 3(6): e111. Published online 2007 June 22. doi: 10.1371/journal.pcbi.0030111.
PMCID: PMC1894820
Slowness: An Objective for Spike-Timing–Dependent Plasticity?
Henning Sprekeler, Christian Michaelis, and Laurenz Wiskott
PLoS Comput Biol. 2007 June; 3(6): e112. Published online 2007 June 29. doi: 10.1371/journal.pcbi.0030112.
PMCID: PMC1904380
From Morphology to Neural Information: The Electric Sense of the Skate
Marcelo Camperi, Timothy C Tricas, and Brandon R Brown
PLoS Comput Biol. 2007 June; 3(6): e113. Published online 2007 June 15. doi: 10.1371/journal.pcbi.0030113.
PMCID: PMC1892606
Ligand Binding and Circular Permutation Modify Residue Interaction Network in DHFR
Zengjian Hu, Donnell Bowen, William M Southerland, Antonio del Sol, Yongping Pan, Ruth Nussinov, and Buyong Ma
PLoS Comput Biol. 2007 June; 3(6): e117. Prepublished online 2007 May 11. Published online 2007 June 15. doi: 10.1371/journal.pcbi.0030117.
PMCID: PMC1892607
Digital Signal Processing Reveals Circadian Baseline Oscillation in Majority of Mammalian Genes
Andrey A Ptitsyn, Sanjin Zvonic, and Jeffrey M Gimble
PLoS Comput Biol. 2007 June; 3(6): e120. Published online 2007 June 15. doi: 10.1371/journal.pcbi.0030120.
PMCID: PMC1892608
Flexible and Accurate Detection of Genomic Copy-Number Changes from aCGH
Oscar M Rueda and Ramón Díaz-Uriarte
PLoS Comput Biol. 2007 June; 3(6): e122. Prepublished online 2007 May 16. Published online 2007 June 22. doi: 10.1371/journal.pcbi.0030122.
PMCID: PMC1894821
A New Principle for Information Storage in an Enzymatic Pathway Model
Bruno Delord, Hugues Berry, Emmanuel Guigon, and Stéphane Genet
PLoS Comput Biol. 2007 June; 3(6): e124. Prepublished online 2007 May 18. Published online 2007 June 22. doi: 10.1371/journal.pcbi.0030124.
PMCID: PMC1894822
Correction
Correction: Bang-Bang Control of Feeding: Role of Hypothalamic and Satiety Signals
B. Silvano Zanutto and John E. R Staddon
PLoS Comput Biol. 2007 June; 3(6): e127. Published online 2007 June 29. doi: 10.1371/journal.pcbi.0030127.
PMCID: PMC1904387
Corrects: B. Silvano Zanutto, et al. Bang-Bang Control of Feeding: Role of Hypothalamic and Satiety Signals. PLoS Comput Biol. 2007 May; 3(5): e97.
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