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Volume 3(1);  January 2007
Education
Automated Querying of Genome Databases
Peter Schattner
PLoS Comput Biol. 2007 January; 3(1): e1. Published online 2007 January 26. doi: 10.1371/journal.pcbi.0030001.
PMCID: PMC1782033
Obituary
In Remembrance: Reinhart Heinrich 1946–2006
Thomas Höfer
PLoS Comput Biol. 2007 January; 3(1): e18. Published online 2007 January 26. doi: 10.1371/journal.pcbi.0030018.
PMCID: PMC1782044
Editorial
Moving Education Forward
Fran Lewitter
PLoS Comput Biol. 2007 January; 3(1): e19. Published online 2007 January 26. doi: 10.1371/journal.pcbi.0030019.
PMCID: PMC1782045
Research Articles
A Phylogenomic Study of Human, Dog, and Mouse
Gina Cannarozzi, Adrian Schneider, and Gaston Gonnet
PLoS Comput Biol. 2007 January; 3(1): e2. Prepublished online 2006 November 20. Published online 2007 January 5. doi: 10.1371/journal.pcbi.0030002.
PMCID: PMC1761043
Using Phylogeny to Improve Genome-Wide Distant Homology Recognition
Sanne Abeln, Carlo Teubner, and Charlotte M Deane
PLoS Comput Biol. 2007 January; 3(1): e3. Prepublished online 2006 November 20. Published online 2007 January 19. doi: 10.1371/journal.pcbi.0030003.
PMCID: PMC1779300
Modeling HER2 Effects on Cell Behavior from Mass Spectrometry Phosphotyrosine Data
Neil Kumar, Alejandro Wolf-Yadlin, Forest M White, and Douglas A Lauffenburger
PLoS Comput Biol. 2007 January; 3(1): e4. Prepublished online 2006 November 20. Published online 2007 January 5. doi: 10.1371/journal.pcbi.0030004.
PMCID: PMC1761044
Protein and DNA Sequence Determinants of Thermophilic Adaptation
Konstantin B Zeldovich, Igor N Berezovsky, and Eugene I Shakhnovich
PLoS Comput Biol. 2007 January; 3(1): e5. Prepublished online 2006 November 30. Published online 2007 January 12. doi: 10.1371/journal.pcbi.0030005.
PMCID: PMC1769408
Both Ligand- and Cell-Specific Parameters Control Ligand Agonism in a Kinetic Model of G Protein–Coupled Receptor Signaling
Tamara L Kinzer-Ursem and Jennifer J Linderman
PLoS Comput Biol. 2007 January; 3(1): e6. Published online 2007 January 12. doi: 10.1371/journal.pcbi.0030006.
PMCID: PMC1769407
Large-Scale Discovery of Promoter Motifs in Drosophila melanogaster
Thomas A Down, Casey M Bergman, Jing Su, and Tim J. P Hubbard
PLoS Comput Biol. 2007 January; 3(1): e7. Prepublished online 2006 December 5. Published online 2007 January 19. doi: 10.1371/journal.pcbi.0030007.
PMCID: PMC1779301
Evolutionary Interactions between N-Linked Glycosylation Sites in the HIV-1 Envelope
Art F. Y Poon, Fraser I Lewis, Sergei L. Kosakovsky Pond, and Simon D. W Frost
PLoS Comput Biol. 2007 January; 3(1): e11. Prepublished online 2006 December 7. Published online 2007 January 19. doi: 10.1371/journal.pcbi.0030011.
PMCID: PMC1779302
Emergent Dynamics of Thymocyte Development and Lineage Determination
Sol Efroni, David Harel, and Irun R Cohen
PLoS Comput Biol. 2007 January; 3(1): e13. Prepublished online 2006 December 11. Published online 2007 January 26. doi: 10.1371/journal.pcbi.0030013.
PMCID: PMC1782042
Detecting Key Structural Features within Highly Recombined Genes
John E Wertz, Karen F McGregor, and Debra E Bessen
PLoS Comput Biol. 2007 January; 3(1): e14. Published online 2007 January 26. doi: 10.1371/journal.pcbi.0030014.
PMCID: PMC1782043
Identification of Functional Subclasses in the DJ-1 Superfamily Proteins
Ying Wei, Dagmar Ringe, Mark A Wilson, and Mary Jo Ondrechen
PLoS Comput Biol. 2007 January; 3(1): e15. Published online 2007 January 26. doi: 10.1371/journal.pcbi.0030010.
PMCID: PMC1782040
Computational Aspects of Feedback in Neural Circuits
Wolfgang Maass, Prashant Joshi, and Eduardo D Sontag
PLoS Comput Biol. 2007 January; 3(1): e165. Prepublished online 2006 October 24. Published online 2007 January 19. doi: 10.1371/journal.pcbi.0020165.
PMCID: PMC1779299
Nitric Oxide Regulates Input Specificity of Long-Term Depression and Context Dependence of Cerebellar Learning
Hideaki Ogasawara, Tomokazu Doi, Kenji Doya, and Mitsuo Kawato
PLoS Comput Biol. 2007 January; 3(1): e179. Prepublished online 2006 November 9. Published online 2007 January 12. doi: 10.1371/journal.pcbi.0020179.
PMCID: PMC1769409
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