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Volume 2(12);  December 2006
Education
Modularity and Dynamics of Cellular Networks
Yuan Qi and Hui Ge
PLoS Comput Biol. 2006 December; 2(12): e174. Published online 2006 December 29. doi: 10.1371/journal.pcbi.0020174.
PMCID: PMC1761653
Perspectives
The Genome: An Outsider's View
Carl Zimmer
PLoS Comput Biol. 2006 December; 2(12): e156. Published online 2006 December 29. doi: 10.1371/journal.pcbi.0020156.
PMCID: PMC1761651
Research Articles
Cooperation is Fleeting in the World of Transposable Elements
Andreas Wagner
PLoS Comput Biol. 2006 December; 2(12): e162. Published online 2006 December 1. doi: 10.1371/journal.pcbi.0020162.
PMCID: PMC1676026
Computational Reconstruction of Iron- and Manganese-Responsive Transcriptional Networks in α-Proteobacteria
Dmitry A Rodionov, Mikhail S Gelfand, Jonathan D Todd, Andrew R. J Curson, and Andrew W. B Johnston
PLoS Comput Biol. 2006 December; 2(12): e163. Prepublished online 2006 October 18. Published online 2006 December 15. doi: 10.1371/journal.pcbi.0020163.
PMCID: PMC1698941
Transcriptional Regulation by Competing Transcription Factor Modules
Rutger Hermsen, Sander Tans, and Pieter Rein ten Wolde
PLoS Comput Biol. 2006 December; 2(12): e164. Prepublished online 2006 October 23. Published online 2006 December 1. doi: 10.1371/journal.pcbi.0020164.
PMCID: PMC1676028
Detecting Statistically Significant Common Insertion Sites in Retroviral Insertional Mutagenesis Screens
Jeroen de Ridder, Anthony Uren, Jaap Kool, Marcel Reinders, and Lodewyk Wessels
PLoS Comput Biol. 2006 December; 2(12): e166. Prepublished online 2006 October 24. Published online 2006 December 8. doi: 10.1371/journal.pcbi.0020166.
PMCID: PMC1676030
Gene Expression of Caenorhabditis elegans Neurons Carries Information on Their Synaptic Connectivity
Alon Kaufman, Gideon Dror, Isaac Meilijson, and Eytan Ruppin
PLoS Comput Biol. 2006 December; 2(12): e167. Published online 2006 December 8. doi: 10.1371/journal.pcbi.0020167.
PMCID: PMC1676027
On Side-Chain Conformational Entropy of Proteins
Jinfeng Zhang and Jun S Liu
PLoS Comput Biol. 2006 December; 2(12): e168. Published online 2006 December 8. doi: 10.1371/journal.pcbi.0020168.
PMCID: PMC1676032
Connectivity in the Yeast Cell Cycle Transcription Network: Inferences from Neural Networks
Christopher E Hart, Eric Mjolsness, and Barbara J Wold
PLoS Comput Biol. 2006 December; 2(12): e169. Prepublished online 2006 October 30. Published online 2006 December 22. doi: 10.1371/journal.pcbi.0020169.
PMCID: PMC1761652
Insight into the Structure of Amyloid Fibrils from the Analysis of Globular Proteins
Antonio Trovato, Fabrizio Chiti, Amos Maritan, and Flavio Seno
PLoS Comput Biol. 2006 December; 2(12): e170. Prepublished online 2006 October 30. Published online 2006 December 15. doi: 10.1371/journal.pcbi.0020170.
PMCID: PMC1698942
Computational Model Explains High Activity and Rapid Cycling of Rho GTPases within Protein Complexes
Andrew B Goryachev and Alexandra V Pokhilko
PLoS Comput Biol. 2006 December; 2(12): e172. Prepublished online 2006 October 9. Published online 2006 December 1. doi: 10.1371/journal.pcbi.0020172.
PMCID: PMC1676031
Protein Homology Network Families Reveal Step-Wise Diversification of Type III and Type IV Secretion Systems
Duccio Medini, Antonello Covacci, and Claudio Donati
PLoS Comput Biol. 2006 December; 2(12): e173. Published online 2006 December 1. doi: 10.1371/journal.pcbi.0020173.
PMCID: PMC1676029
DARPP-32 Is a Robust Integrator of Dopamine and Glutamate Signals
Éric Fernandez, Renaud Schiappa, Jean-Antoine Girault, and Nicolas Le Novère
PLoS Comput Biol. 2006 December; 2(12): e176. Prepublished online 2006 November 6. Published online 2006 December 22. doi: 10.1371/journal.pcbi.0020176.
PMCID: PMC1761654
Prediction of Amyloidogenic and Disordered Regions in Protein Chains
Oxana V Galzitskaya, Sergiy O Garbuzynskiy, and Michail Yurievich Lobanov
PLoS Comput Biol. 2006 December; 2(12): e177. Prepublished online 2006 November 6. Published online 2006 December 29. doi: 10.1371/journal.pcbi.0020177.
PMCID: PMC1761655
Stern-Judging: A Simple, Successful Norm Which Promotes Cooperation under Indirect Reciprocity
Jorge M Pacheco, Francisco C Santos, and Fabio A. C. C Chalub
PLoS Comput Biol. 2006 December; 2(12): e178. Published online 2006 December 29. doi: 10.1371/journal.pcbi.0020178.
PMCID: PMC1761656
Targeting Neuropilin-1 to Inhibit VEGF Signaling in Cancer: Comparison of Therapeutic Approaches
Feilim Mac Gabhann and Aleksander S Popel
PLoS Comput Biol. 2006 December; 2(12): e180. Prepublished online 2006 November 16. Published online 2006 December 29. doi: 10.1371/journal.pcbi.0020180.
PMCID: PMC1761657
Correction
Correction: Ten Simple Rules for Selecting a Postdoctoral Position
Philip E Bourne and Iddo Friedberg
PLoS Comput Biol. 2006 December; 2(12): e181. Published online 2006 December 29. doi: 10.1371/journal.pcbi.0020181.
PMCID: PMC1764056
Corrects: Philip E Bourne, et al. Ten Simple Rules for Selecting a Postdoctoral Position. PLoS Comput Biol. 2006 November; 2(11): e121.
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