PLoS Comput Biol Volume 1(6); November 2005

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Volume 1(6); November 2005

Message from ISCB

Bioinformatics Education—Perspectives and Challenges

Shoba Ranganathan

PLoS Comput Biol. 2005 November; 1(6): e52. Published online 2005 November 25. doi: 10.1371/journal.pcbi.0010052.

PMCID: PMC1289384

| Full Text | PDF–236K |

Perspectives

NIH Roadmap Interdisciplinary Research Initiatives

Michael F Huerta, Gregory K Farber, Elizabeth L Wilder, Dushanka V Kleinman, Patricia A Grady, David A Schwartz, and Lawrence A Tabak

PLoS Comput Biol. 2005 November; 1(6): e59. Published online 2005 November 25. doi: 10.1371/journal.pcbi.0010059.

PMCID: PMC1289386

| Full Text | PDF–48K |

Review

Quasispecies Made Simple

J. J Bull, Lauren Ancel Meyers, and Michael Lachmann

PLoS Comput Biol. 2005 November; 1(6): e61. Published online 2005 November 25. doi: 10.1371/journal.pcbi.0010061.

PMCID: PMC1289388

| Abstract | Full Text | PDF–343K |

Research Articles

Use of Artificial Genomes in Assessing Methods for Atypical Gene Detection

Rajeev K Azad and Jeffrey G Lawrence

PLoS Comput Biol. 2005 November; 1(6): e56. Published online 2005 November 11. doi: 10.1371/journal.pcbi.0010056.

PMCID: PMC1282332

A Guild of 45 CRISPR-Associated (Cas) Protein Families and Multiple CRISPR/Cas Subtypes Exist in Prokaryotic Genomes

Daniel H Haft, Jeremy Selengut, Emmanuel F Mongodin, and Karen E Nelson

PLoS Comput Biol. 2005 November; 1(6): e60. Prepublished online 2005 October 6. Published online 2005 November 11. doi: 10.1371/journal.pcbi.0010060.

PMCID: PMC1282333

| Abstract | Full Text | PDF–485K |

The Association of Tetrameric Acetylcholinesterase with ColQ Tail: A Block Normal Mode Analysis

Deqiang Zhang and J. Andrew McCammon

PLoS Comput Biol. 2005 November; 1(6): e62. Prepublished online 2005 October 19. Published online 2005 November 18. doi: 10.1371/journal.pcbi.0010062.

PMCID: PMC1285061

| Abstract | Full Text | PDF–1.1M |

Stealth Proteins: In Silico Identification of a Novel Protein Family Rendering Bacterial Pathogens Invisible to Host Immune Defense

Peter Sperisen, Christoph D Schmid, Philipp Bucher, and Olav Zilian

PLoS Comput Biol. 2005 November; 1(6): e63. Published online 2005 November 18. doi: 10.1371/journal.pcbi.0010063.

PMCID: PMC1285062

Quantitative Analysis of Genetic and Neuronal Multi-Perturbation Experiments

Alon Kaufman, Alon Keinan, Isaac Meilijson, Martin Kupiec, and Eytan Ruppin

PLoS Comput Biol. 2005 November; 1(6): e64. Prepublished online 2005 October 26. Published online 2005 November 25. doi: 10.1371/journal.pcbi.0010064.

PMCID: PMC1289391

Allele-Specific Amplification in Cancer Revealed by SNP Array Analysis

Thomas LaFramboise, Barbara A Weir, Xiaojun Zhao, Rameen Beroukhim, Cheng Li, David Harrington, William R Sellers, and Matthew Meyerson

PLoS Comput Biol. 2005 November; 1(6): e65. Prepublished online 2005 October 28. Published online 2005 November 25. doi: 10.1371/journal.pcbi.0010065.

PMCID: PMC1289392

| Abstract | Full Text | PDF–478K |

Refining Protein Subcellular Localization

Michelle S Scott, Sara J Calafell, David Y Thomas, and Michael T Hallett

PLoS Comput Biol. 2005 November; 1(6): e66. Published online 2005 November 25. doi: 10.1371/journal.pcbi.0010066.

PMCID: PMC1289393

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		Other Issues: previous \| next \| latest \| archive Volume 1(6); November 2005 Message from ISCB Bioinformatics Education—Perspectives and Challenges Shoba Ranganathan PLoS Comput Biol. 2005 November; 1(6): e52. Published online 2005 November 25. doi: 10.1371/journal.pcbi.0010052. PMCID: PMC1289384 \| Full Text \| PDF–236K \| Perspectives NIH Roadmap Interdisciplinary Research Initiatives Michael F Huerta, Gregory K Farber, Elizabeth L Wilder, Dushanka V Kleinman, Patricia A Grady, David A Schwartz, and Lawrence A Tabak PLoS Comput Biol. 2005 November; 1(6): e59. Published online 2005 November 25. doi: 10.1371/journal.pcbi.0010059. PMCID: PMC1289386 \| Full Text \| PDF–48K \| Review Quasispecies Made Simple J. J Bull, Lauren Ancel Meyers, and Michael Lachmann PLoS Comput Biol. 2005 November; 1(6): e61. Published online 2005 November 25. doi: 10.1371/journal.pcbi.0010061. PMCID: PMC1289388 \| Abstract \| Full Text \| PDF–343K \| Research Articles Use of Artificial Genomes in Assessing Methods for Atypical Gene Detection Rajeev K Azad and Jeffrey G Lawrence PLoS Comput Biol. 2005 November; 1(6): e56. Published online 2005 November 11. doi: 10.1371/journal.pcbi.0010056. PMCID: PMC1282332 \| Abstract \| Full Text \| PDF–480K \| Supplementary Material \| A Guild of 45 CRISPR-Associated (Cas) Protein Families and Multiple CRISPR/Cas Subtypes Exist in Prokaryotic Genomes Daniel H Haft, Jeremy Selengut, Emmanuel F Mongodin, and Karen E Nelson PLoS Comput Biol. 2005 November; 1(6): e60. Prepublished online 2005 October 6. Published online 2005 November 11. doi: 10.1371/journal.pcbi.0010060. PMCID: PMC1282333 \| Abstract \| Full Text \| PDF–485K \| The Association of Tetrameric Acetylcholinesterase with ColQ Tail: A Block Normal Mode Analysis Deqiang Zhang and J. Andrew McCammon PLoS Comput Biol. 2005 November; 1(6): e62. Prepublished online 2005 October 19. Published online 2005 November 18. doi: 10.1371/journal.pcbi.0010062. PMCID: PMC1285061 \| Abstract \| Full Text \| PDF–1.1M \| Stealth Proteins: In Silico Identification of a Novel Protein Family Rendering Bacterial Pathogens Invisible to Host Immune Defense Peter Sperisen, Christoph D Schmid, Philipp Bucher, and Olav Zilian PLoS Comput Biol. 2005 November; 1(6): e63. Published online 2005 November 18. doi: 10.1371/journal.pcbi.0010063. PMCID: PMC1285062 \| Abstract \| Full Text \| PDF–795K \| Supplementary Material \| Quantitative Analysis of Genetic and Neuronal Multi-Perturbation Experiments Alon Kaufman, Alon Keinan, Isaac Meilijson, Martin Kupiec, and Eytan Ruppin PLoS Comput Biol. 2005 November; 1(6): e64. Prepublished online 2005 October 26. Published online 2005 November 25. doi: 10.1371/journal.pcbi.0010064. PMCID: PMC1289391 \| Abstract \| Full Text \| PDF–157K \| Supplementary Material \| Allele-Specific Amplification in Cancer Revealed by SNP Array Analysis Thomas LaFramboise, Barbara A Weir, Xiaojun Zhao, Rameen Beroukhim, Cheng Li, David Harrington, William R Sellers, and Matthew Meyerson PLoS Comput Biol. 2005 November; 1(6): e65. Prepublished online 2005 October 28. Published online 2005 November 25. doi: 10.1371/journal.pcbi.0010065. PMCID: PMC1289392 \| Abstract \| Full Text \| PDF–478K \| Refining Protein Subcellular Localization Michelle S Scott, Sara J Calafell, David Y Thomas, and Michael T Hallett PLoS Comput Biol. 2005 November; 1(6): e66. Published online 2005 November 25. doi: 10.1371/journal.pcbi.0010066. PMCID: PMC1289393 \| Abstract \| Full Text \| PDF–446K \| Supplementary Material \|
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