PLoS Comput Biol Volume 1(1); June 2005

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Volume 1(1); June 2005

Editorial

PLoS Computational Biology: A New Community Journal

Philip E Bourne, Steven E Brenner, and Michael B Eisen

PLoS Comput Biol. 2005 June; 1(1): e4. Published online 2005 June 24. doi: 10.1371/journal.pcbi.0010004.

PMCID: PMC1183510

| Full Text | PDF–52K |

Message from ISCB

An Open Forum for Computational Biology

Michael Gribskov

PLoS Comput Biol. 2005 June; 1(1): e5. Published online 2005 June 24. doi: 10.1371/journal.pcbi.0010005.

PMCID: PMC1183511

| Full Text | PDF–159K |

Perspectives

“Antedisciplinary” Science

Sean R Eddy

PLoS Comput Biol. 2005 June; 1(1): e6. Published online 2005 June 24. doi: 10.1371/journal.pcbi.0010006.

PMCID: PMC1183512

| Full Text | PDF–61K |

Research Articles

Ab Initio Prediction of Transcription Factor Targets Using Structural Knowledge

Tommy Kaplan, Nir Friedman, and Hanah Margalit

PLoS Comput Biol. 2005 June; 1(1): e1. Published online 2005 June 24. doi: 10.1371/journal.pcbi.0010001.

PMCID: PMC1183507

What Makes Ribosome-Mediated Transcriptional Attenuation Sensitive to Amino Acid Limitation?

Johan Elf and Måns Ehrenberg

PLoS Comput Biol. 2005 June; 1(1): e2. Published online 2005 June 24. doi: 10.1371/journal.pcbi.0010002.

PMCID: PMC1183508

| Abstract | Full Text | PDF–341K |

Predicting Functional Gene Links from Phylogenetic-Statistical Analyses of Whole Genomes

Daniel Barker and Mark Pagel

PLoS Comput Biol. 2005 June; 1(1): e3. Published online 2005 June 24. doi: 10.1371/journal.pcbi.0010003.

PMCID: PMC1183509

| Abstract | Full Text | PDF–304K |

Susceptibility to Superhelically Driven DNA Duplex Destabilization: A Highly Conserved Property of Yeast Replication Origins

Prashanth Ak and Craig J Benham

PLoS Comput Biol. 2005 June; 1(1): e7. Published online 2005 June 24. doi: 10.1371/journal.pcbi.0010007.

PMCID: PMC1183513

Combinatorial Pattern Discovery Approach for the Folding Trajectory Analysis of a β-Hairpin

Laxmi Parida and Ruhong Zhou

PLoS Comput Biol. 2005 June; 1(1): e8. Published online 2005 June 24. doi: 10.1371/journal.pcbi.0010008.

PMCID: PMC1183514

| Abstract | Full Text | PDF–237K |

Improving the Precision of the Structure–Function Relationship by Considering Phylogenetic Context

Boris E Shakhnovich

PLoS Comput Biol. 2005 June; 1(1): e9. Published online 2005 June 24. doi: 10.1371/journal.pcbi.0010009.

PMCID: PMC1183515

Extraction of Transcript Diversity from Scientific Literature

Parantu K Shah, Lars J Jensen, Stéphanie Boué, and Peer Bork

PLoS Comput Biol. 2005 June; 1(1): e10. Published online 2005 June 24. doi: 10.1371/journal.pcbi.0010010.

PMCID: PMC1183516

A Phenomenological Theory of Spatially Structured Local Synaptic Connectivity

Bagrat Amirikian

PLoS Comput Biol. 2005 June; 1(1): e11. Published online 2005 June 24. doi: 10.1371/journal.pcbi.0010011.

PMCID: PMC1183517

| Abstract | Full Text | PDF–337K |

The Genomic Pattern of tDNA Operon Expression in E. coli

David H Ardell and Leif A Kirsebom

PLoS Comput Biol. 2005 June; 1(1): e12. Published online 2005 June 24. doi: 10.1371/journal.pcbi.0010012.

PMCID: PMC1183518

microRNA Target Predictions across Seven Drosophila Species and Comparison to Mammalian Targets

Dominic Grün, Yi-Lu Wang, David Langenberger, Kristin C Gunsalus, and Nikolaus Rajewsky

PLoS Comput Biol. 2005 June; 1(1): e13. Published online 2005 June 24. doi: 10.1371/journal.pcbi.0010013.

PMCID: PMC1183519

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		Other Issues: previous \| next \| latest \| archive Volume 1(1); June 2005 Editorial PLoS Computational Biology: A New Community Journal Philip E Bourne, Steven E Brenner, and Michael B Eisen PLoS Comput Biol. 2005 June; 1(1): e4. Published online 2005 June 24. doi: 10.1371/journal.pcbi.0010004. PMCID: PMC1183510 \| Full Text \| PDF–52K \| Message from ISCB An Open Forum for Computational Biology Michael Gribskov PLoS Comput Biol. 2005 June; 1(1): e5. Published online 2005 June 24. doi: 10.1371/journal.pcbi.0010005. PMCID: PMC1183511 \| Full Text \| PDF–159K \| Perspectives “Antedisciplinary” Science Sean R Eddy PLoS Comput Biol. 2005 June; 1(1): e6. Published online 2005 June 24. doi: 10.1371/journal.pcbi.0010006. PMCID: PMC1183512 \| Full Text \| PDF–61K \| Research Articles Ab Initio Prediction of Transcription Factor Targets Using Structural Knowledge Tommy Kaplan, Nir Friedman, and Hanah Margalit PLoS Comput Biol. 2005 June; 1(1): e1. Published online 2005 June 24. doi: 10.1371/journal.pcbi.0010001. PMCID: PMC1183507 \| Abstract \| Full Text \| PDF–465K \| Supplementary Material \| What Makes Ribosome-Mediated Transcriptional Attenuation Sensitive to Amino Acid Limitation? Johan Elf and Måns Ehrenberg PLoS Comput Biol. 2005 June; 1(1): e2. Published online 2005 June 24. doi: 10.1371/journal.pcbi.0010002. PMCID: PMC1183508 \| Abstract \| Full Text \| PDF–341K \| Predicting Functional Gene Links from Phylogenetic-Statistical Analyses of Whole Genomes Daniel Barker and Mark Pagel PLoS Comput Biol. 2005 June; 1(1): e3. Published online 2005 June 24. doi: 10.1371/journal.pcbi.0010003. PMCID: PMC1183509 \| Abstract \| Full Text \| PDF–304K \| Susceptibility to Superhelically Driven DNA Duplex Destabilization: A Highly Conserved Property of Yeast Replication Origins Prashanth Ak and Craig J Benham PLoS Comput Biol. 2005 June; 1(1): e7. Published online 2005 June 24. doi: 10.1371/journal.pcbi.0010007. PMCID: PMC1183513 \| Abstract \| Full Text \| PDF–238K \| Supplementary Material \| Combinatorial Pattern Discovery Approach for the Folding Trajectory Analysis of a β-Hairpin Laxmi Parida and Ruhong Zhou PLoS Comput Biol. 2005 June; 1(1): e8. Published online 2005 June 24. doi: 10.1371/journal.pcbi.0010008. PMCID: PMC1183514 \| Abstract \| Full Text \| PDF–237K \| Improving the Precision of the Structure–Function Relationship by Considering Phylogenetic Context Boris E Shakhnovich PLoS Comput Biol. 2005 June; 1(1): e9. Published online 2005 June 24. doi: 10.1371/journal.pcbi.0010009. PMCID: PMC1183515 \| Abstract \| Full Text \| PDF–249K \| Supplementary Material \| Correction \| Extraction of Transcript Diversity from Scientific Literature Parantu K Shah, Lars J Jensen, Stéphanie Boué, and Peer Bork PLoS Comput Biol. 2005 June; 1(1): e10. Published online 2005 June 24. doi: 10.1371/journal.pcbi.0010010. PMCID: PMC1183516 \| Abstract \| Full Text \| PDF–222K \| Supplementary Material \| A Phenomenological Theory of Spatially Structured Local Synaptic Connectivity Bagrat Amirikian PLoS Comput Biol. 2005 June; 1(1): e11. Published online 2005 June 24. doi: 10.1371/journal.pcbi.0010011. PMCID: PMC1183517 \| Abstract \| Full Text \| PDF–337K \| The Genomic Pattern of tDNA Operon Expression in E. coli David H Ardell and Leif A Kirsebom PLoS Comput Biol. 2005 June; 1(1): e12. Published online 2005 June 24. doi: 10.1371/journal.pcbi.0010012. PMCID: PMC1183518 \| Abstract \| Full Text \| PDF–325K \| Supplementary Material \| microRNA Target Predictions across Seven Drosophila Species and Comparison to Mammalian Targets Dominic Grün, Yi-Lu Wang, David Langenberger, Kristin C Gunsalus, and Nikolaus Rajewsky PLoS Comput Biol. 2005 June; 1(1): e13. Published online 2005 June 24. doi: 10.1371/journal.pcbi.0010013. PMCID: PMC1183519 \| Abstract \| Full Text \| PDF–814K \| Supplementary Material \|
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