| | Articles Structural variations and stabilising modifications of synthetic siRNAs in mammalian cells Frank Czauderna, Melanie Fechtner, Sibylle Dames, Hüseyin Aygün, Anke Klippel, Gijsbertus J. Pronk, Klaus Giese, and Jörg Kaufmann Nucleic Acids Res. 2003 June 1; 31(11): 2705–2716. PMCID: PMC156727 Insight into the mechanism of the peptide-based gene delivery system MPG: implications for delivery of siRNA into mammalian cells Federica Simeoni, May C. Morris, Frederic Heitz, and Gilles Divita Nucleic Acids Res. 2003 June 1; 31(11): 2717–2724. PMCID: PMC156720 Syntheses and structural studies of calix[4]arene–nucleoside and calix[4]arene–oligonucleotide hybrids Su Jeong Kim and Byeang Hyean Kim Nucleic Acids Res. 2003 June 1; 31(11): 2725–2734. PMCID: PMC156725 Transcriptional regulation of the human MIP-1α promoter by RUNX1 and MOZ Claire A. P. Bristow and Paul Shore Nucleic Acids Res. 2003 June 1; 31(11): 2735–2744. PMCID: PMC156734 Effect of DNA bases and backbone on σ70 holoenzyme binding and isomerization using fork junction probes Mike S. Fenton and Jay D. Gralla Nucleic Acids Res. 2003 June 1; 31(11): 2745–2750. PMCID: PMC156733 The phage T4 restriction endoribonuclease RegB: a cyclizing enzyme that requires two histidines to be fully active Fakhri Saïda, Marc Uzan, and François Bontems Nucleic Acids Res. 2003 June 1; 31(11): 2751–2758. PMCID: PMC156712 Steric inhibition of human immunodeficiency virus type-1 Tat-dependent trans-activation in vitro and in cells by oligonucleotides containing 2′-O-methyl G-clamp ribonucleoside analogues Stephen C. Holmes, Andrey A. Arzumanov, and Michael J. Gait Nucleic Acids Res. 2003 June 1; 31(11): 2759–2768. PMCID: PMC156719 Overexpression of FABP7 in Down syndrome fetal brains is associated with PKNOX1 gene-dosage imbalance Ma Francisca Sánchez-Font, Anna Bosch-Comas, Roser Gonzàlez-Duarte, and Gemma Marfany Nucleic Acids Res. 2003 June 1; 31(11): 2769–2777. PMCID: PMC156729 Domain mapping of Escherichia coli RecQ defines the roles of conserved N- and C-terminal regions in the RecQ family Douglas A. Bernstein and James L. Keck Nucleic Acids Res. 2003 June 1; 31(11): 2778–2785. PMCID: PMC156711 UVA-induced cyclobutane pyrimidine dimers form predominantly at thymine–thymine dipyrimidines and correlate with the mutation spectrum in rodent cells Patrick J. Rochette, Jean-Philippe Therrien, Régen Drouin, Daniel Perdiz, Nathalie Bastien, Elliot A. Drobetsky, and Evelyne Sage Nucleic Acids Res. 2003 June 1; 31(11): 2786–2794. PMCID: PMC156735 Faithful expression of a tagged Fugu WT1 protein from a genomic transgene in zebrafish: efficient splicing of pufferfish genes in zebrafish but not mice Colin G. Miles, Lesley Rankin, Shirley I. Smith, Martina Niksic, Greg Elgar, and Nicholas D. Hastie Nucleic Acids Res. 2003 June 1; 31(11): 2795–2802. PMCID: PMC156718 Purification and characterisation of a novel DNA methyltransferase, M.AhdI Phil Marks, John McGeehan, Geoff Wilson, Neil Errington, and Geoff Kneale Nucleic Acids Res. 2003 June 1; 31(11): 2803–2810. PMCID: PMC156732 Using structural motif templates to identify proteins with DNA binding function Susan Jones, Jonathan A. Barker, Irene Nobeli, and Janet M. Thornton Nucleic Acids Res. 2003 June 1; 31(11): 2811–2823. PMCID: PMC156721 Solution structure of the influenza A virus cRNA promoter: implications for differential recognition of viral promoter structures by RNA-dependent RNA polymerase Chin-Ju Park, Sung-Hun Bae, Mi-Kyung Lee, Gabriele Varani, and Byong-Seok Choi Nucleic Acids Res. 2003 June 1; 31(11): 2824–2832. PMCID: PMC156722 SPINE 2: a system for collaborative structural proteomics within a federated database framework Chern-Sing Goh, Ning Lan, Nathaniel Echols, Shawn M. Douglas, Duncan Milburn, Paul Bertone, Rong Xiao, Li-Chung Ma, Deyou Zheng, Zeba Wunderlich, Tom Acton, Gaetano T. Montelione, and Mark Gerstein Nucleic Acids Res. 2003 June 1; 31(11): 2833–2838. PMCID: PMC156730 Integrated functional and bioinformatics approach for the identification and experimental verification of RNA signals: application to HIV-1 INS Horst Wolff, Ruth Brack-Werner, Markus Neumann, Thomas Werner, and Ralf Schneider Nucleic Acids Res. 2003 June 1; 31(11): 2839–2851. PMCID: PMC156724 The role of intercalating residues in chromosomal high-mobility-group protein DNA binding, bending and specificity Janet Klass, Frank V. Murphy, IV, Susan Fouts, Melissa Serenil, Anita Changela, Jessica Siple, and Mair E. A. Churchill Nucleic Acids Res. 2003 June 1; 31(11): 2852–2864. PMCID: PMC156723 Tertiary structure base pairs between D- and TψC-loops of Escherichia coli tRNALeu play important roles in both aminoacylation and editing Xing Du and En-Duo Wang Nucleic Acids Res. 2003 June 1; 31(11): 2865–2872. PMCID: PMC156717 The Drosophila Corto protein interacts with Polycomb-group proteins and the GAGA factor Juliette Salvaing, Aurore Lopez, Antoine Boivin, Jean S. Deutsch, and Frédérique Peronnet Nucleic Acids Res. 2003 June 1; 31(11): 2873–2882. PMCID: PMC156716 Optimisation of the 10–23 DNAzyme–substrate pairing interactions enhanced RNA cleavage activity at purine–cytosine target sites Murray J. Cairns, Andrew King, and Lun-Quan Sun Nucleic Acids Res. 2003 June 1; 31(11): 2883–2889. PMCID: PMC156713 Experimental and computational analysis of transcriptional start sites in the cyanobacterium Prochlorococcus MED4 Jörg Vogel, Ilka M. Axmann, Hanspeter Herzel, and Wolfgang R. Hess Nucleic Acids Res. 2003 June 1; 31(11): 2890–2899. PMCID: PMC156731 ZBP-89 represses vimentin gene transcription by interacting with the transcriptional activator, Sp1 Xueping Zhang, Iman H. Diab, and Zendra E. Zehner Nucleic Acids Res. 2003 June 1; 31(11): 2900–2914. PMCID: PMC156715 A new member of the MCM protein family encoded by the human MCM8 gene, located contrapodal to GCD10 at chromosome band 20p12.3–13 Edward M. Johnson, Yayoi Kinoshita, and Dianne C. Daniel Nucleic Acids Res. 2003 June 1; 31(11): 2915–2925. PMCID: PMC156728 Exploring the repertoire of RNA secondary motifs using graph theory; implications for RNA design Hin Hark Gan, Samuela Pasquali, and Tamar Schlick Nucleic Acids Res. 2003 June 1; 31(11): 2926–2943. PMCID: PMC156709 Specific interactions of distamycin with G-quadruplex DNA Melanie J. Cocco, L. A. Hanakahi, Michael D. Huber, and Nancy Maizels Nucleic Acids Res. 2003 June 1; 31(11): 2944–2951. PMCID: PMC156726 A novel engineered meganuclease induces homologous recombination in yeast and mammalian cells Jean-Charles Epinat, Sylvain Arnould, Patrick Chames, Pascal Rochaix, Dominique Desfontaines, Clémence Puzin, Amélie Patin, Alexandre Zanghellini, Frédéric Pâques, and Emmanuel Lacroix Nucleic Acids Res. 2003 June 1; 31(11): 2952–2962. PMCID: PMC156710 Efficient clustering of large EST data sets on parallel computers Anantharaman Kalyanaraman, Srinivas Aluru, Suresh Kothari, and Volker Brendel Nucleic Acids Res. 2003 June 1; 31(11): 2963–2974. PMCID: PMC156714 NAR Methods Online A novel helper phage that improves phage display selection efficiency by preventing the amplification of phages without recombinant protein R. Arjen Kramer, Freek Cox, Marieke van der Horst, Sonja van den Oudenrijn, Pieter C. M. Res, Judith Bia, Ton Logtenberg, and John de Kruif Nucleic Acids Res. 2003 June 1; 31(11): e59. PMCID: PMC156736 Use of a three-color cDNA microarray platform to measure and control support-bound probe for improved data quality and reproducibility Martin J. Hessner, Xujing Wang, Shehnaz Khan, Lisa Meyer, Michael Schlicht, Jennifer Tackes, Milton W. Datta, Howard J. Jacob, and Soumitra Ghosh Nucleic Acids Res. 2003 June 1; 31(11): e60. PMCID: PMC156737 Precise determination of mitochondrial DNA copy number in human skeletal and cardiac muscle by a PCR-based assay: lack of change of copy number with age Francis J. Miller, Franklin L. Rosenfeldt, Chunfang Zhang, Anthony W. Linnane, and Phillip Nagley Nucleic Acids Res. 2003 June 1; 31(11): e61. PMCID: PMC156738 A novel multiplex quantitative DNA array based PCR (MQDA-PCR) for quantification of transgenic maize in food and feed Knut Rudi, Ida Rud, and Askild Holck Nucleic Acids Res. 2003 June 1; 31(11): e62. PMCID: PMC156739 MALDI mass spectrometry analysis of single nucleotide polymorphisms by photocleavage and charge-tagging Sascha Sauer, Hans Lehrach, and Richard Reinhardt Nucleic Acids Res. 2003 June 1; 31(11): e63. PMCID: PMC156740 In vitro analysis of nuclear mRNA export using molecular beacons for target detection Ralph H. Kehlenbach Nucleic Acids Res. 2003 June 1; 31(11): e64. PMCID: PMC156741 An automated microplate-based method for monitoring DNA strand breaks in plasmids and bacterial artificial chromosomes Cassandra Rock, Parviz Ayazi Shamlou, and M. Susana Levy Nucleic Acids Res. 2003 June 1; 31(11): e65. PMCID: PMC156742 Genotyping single nucleotide polymorphisms directly from genomic DNA by invasive cleavage reaction on microspheres Kakuturu V. N. Rao, Priscilla Wilkins Stevens, Jeff G. Hall, Victor Lyamichev, Bruce P. Neri, and David M. Kelso Nucleic Acids Res. 2003 June 1; 31(11): e66. PMCID: PMC156743 |