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Editor-in-Chief
Melissa Norton, MD Biology Editor
Penelope Webb, PhD In-house Editor
Erik Alexandersson
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 BMC Genomics, Volume 10
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Research article
 
Mitochondrial genome sequence and gene order of Sipunculus
nudus give additional support for an inclusion of Sipuncula
into Annelida
Adina Mwinyi, Achim Meyer, Christoph Bleidorn, Bernhard Lieb, Thomas Bartolomaeus, Lars Podsiadlowski
BMC Genomics 2009, 10:27 (16January2009)
[Abstract] [Provisional PDF]
Methodology article
A novel regulatory event-based gene set analysis method for exploring global functional changes in heterogeneous genomic data sets
Chien-Yi Tung, Chih-Hung Jen, Ming-Ta Hsu, Hsei-Wei Wang, Chi-Hung Lin
BMC Genomics 2009, 10:26 (16January2009)
[Abstract] [Provisional PDF]
Research article
Optical mapping of the Mycobacterium avium subspecies paratuberculosis genome
Chia-wei Wu, Timothy M Schramm, Shiguo Zhou, David C Schwartz, Adel M Talaat
BMC Genomics 2009, 10:25 (15January2009)
[Abstract] [Provisional PDF]
Research article
The G protein-coupled receptor subset of the dog genome is more similar to that in humans than rodents
Tatjana Haitina, Robert Fredriksson, Steven M Foord, Helgi B Schioth, David E Gloriam
BMC Genomics 2009, 10:24 (15January2009)
[Abstract] [Provisional PDF]
Research article
Computational prediction of cAMP receptor protein (CRP) binding sites in cyanobacterial genomes
Minli Xu, Zhengchang Su
BMC Genomics 2009, 10:23 (15January2009)
[Abstract] [Provisional PDF]
Software
BioMart - biological queries made easy
Damian Smedley, Syed Haider, Benoit Ballester, Richard Holland, Darin London, Gudmundur Thorisson, Arek Kasprzyk
BMC Genomics 2009, 10:22 (14January2009)
[Abstract] [Provisional PDF] [PubMed] [Related articles]
Research article
Genetic diversity of canine olfactory receptors
Stephanie Robin, Sandrine Tacher, Maud Rimbault, Amaury Vaysse, Stephane Dreano, Catherine Andre, Christophe Hitte, Francis Galibert
BMC Genomics 2009, 10:21 (14January2009)
[Abstract] [Provisional PDF]
Research article
Mapping QTL affecting resistance to Marek's disease in an F6 advanced intercross population of commercial layer chickens.
Eliyahu M Heifetz, Janet E Fulton, Neil P O'Sullivan, James A Arthur, Hans Cheng, Jing Wang, Morris Soller, Jack CM Dekkers
BMC Genomics 2009, 10:20 (14January2009)
[Abstract] [Provisional PDF] [PubMed] [Related articles]
Research article
Genic Regions of a Large Salamander Genome Contain Long Introns and Novel Genes
Jeramiah J Smith, Srikrishna Putta, Wei Zhu, Gerald M Pao, Inder M Verma, Tony Hunter, Susan V Bryant, David M Gardiner, Timothy T Harkins, S. Randal Voss
BMC Genomics 2009, 10:19 (13January2009)
[Abstract] [Provisional PDF] [PubMed] [Related articles]
Research article
Identification of putative regulatory motifs in the upstream regions of co-expressed functional groups of genes in Plasmodium falciparum
Prathima Iengar, N.v. Joshi
BMC Genomics 2009, 10:18 (13January2009)
[Abstract] [Provisional PDF] [PubMed] [Related articles]
Research article
Expression profiles of Urbilaterian genes uniquely shared between honey bee and vertebrates
Toshiaki Matsui, Toshiyuki Yamamoto, Stefan Wyder, Evgeny M Zdobnov, Tatsuhiko Kadowaki
BMC Genomics 2009, 10:17 (12January2009)
[Abstract] [Provisional PDF] [PubMed] [Related articles]
Research article
Conservation in the face of diversity: multistrain analysis of an intracellular bacterium
Michael J Dark, David R Herndon, Lowell S Kappmeyer, Mikel P Gonzales, Elizabeth Nordeen, Guy H Palmer, Donald P Knowles Jr., Kelly A Brayton
BMC Genomics 2009, 10:16 (11January2009)
[Abstract] [Provisional PDF] [PubMed] [Related articles]
Research article
Two distinct modes of nucleosome modulation associated with different degrees of dependence of nucleosome positioning on the underlying DNA sequence
Zhiming Dai, Xianhua Dai, Qian Xiang, Jihua Feng, Jiang Wang, Yangyang Deng, Caisheng He
BMC Genomics 2009, 10:15 (10January2009)
[Abstract] [Provisional PDF] [PubMed] [Related articles]
Database
RepPop: a database for repetitive elements in Populus trichocarpa
Fengfeng Zhou, Ying Xu
BMC Genomics 2009, 10:14 (9January2009)
[Abstract] [Provisional PDF] [PubMed] [Related articles]
Research article
Reconstruction and functional analysis of altered molecular pathways in human atherosclerotic arteries
Stefano Cagnin, Michele Biscuola, Cristina Patuzzo, Elisabetta Trabetti, Alessandra Pasquali, Paolo Laveder, Giuseppe Faggian, Mauro Iafrancesco, Alessandro Mazzucco, Pier Franco Pignatti, Gerolamo Lanfranchi
BMC Genomics 2009, 10:13 (9January2009)
[Abstract] [Provisional PDF] [PubMed] [Related articles]
Research article
High-resolution mapping of plasmid transcriptomes in different host bacteria
Masatoshi Miyakoshi, Hiromi Nishida, Masaki Shintani, Hisakazu Yamane, Hideaki Nojiri
BMC Genomics 2009, 10:12 (9January2009)
[Abstract] [Provisional PDF] [PubMed] [Related articles]
Research article
Comparative proteome analysis of psychrophilic versus mesophilic bacterial species: Insights into the molecular basis of cold adaptation of proteins
Raghu Prasad Rao Metpally, Boojala Vijay B Reddy
BMC Genomics 2009, 10:11 (8January2009)
[Abstract] [Provisional PDF] [PubMed] [Related articles]
Research article
A gene expression signature shared by human mature oocytes and embryonic stem cells
Said Assou, Doris Cerecedo, Sylvie Tondeur, Veronique Pantesco, Outi Hovatta, Bernard Klein, Samir Hamamah, John De Vos
BMC Genomics 2009, 10:10 (8January2009)
[Abstract] [Provisional PDF] [PubMed] [Related articles]
Research article
Complex organizational structure of the genome revealed by genome-wide analysis of single and alternative promoters in Drosophila melanogaster
Qianqian Zhu, Marc S. Halfon
BMC Genomics 2009, 10:9 (7January2009)
[Abstract] [Provisional PDF] [PubMed] [Related articles]
Research article
Asymmetrical distribution of non-conserved regulatory sequences at PHOX2B is reflected at the ENCODE loci and illuminates a possible genome-wide trend
David M McGaughey, Zachary E Stine, Jimmy L Huynh, Ryan M Vinton, Andrew S McCallion
BMC Genomics 2009, 10:8 (7January2009)
[Abstract] [Provisional PDF] [PubMed] [Related articles]
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