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UniSTS is a comprehensive database of sequence tagged sites (STSs)
derived from STS-based maps and other experiments. STSs are defined by
PCR primer pairs and are associated with additional information such as
genomic position, genes, and sequences.
|
 Summary of Maps in UniSTS |
|
| Organism |
Total |
Total |
|
| |
Map name |
Map title |
markers |
UniSTSs1 |
| Links2 | |
| Allium cepa |
|
Havey_05 |
Onion Genetic Map |
233 |
35 | |
 |
|
|
ftp |
 |
| Apis mellifera |
|
Hunt |
Hunt Honeybee Linkage Map 7_25_05 |
1,155 |
1 | |
|
 |
|
ftp |
|
Solignac_1700 |
Solignac Genetic Map, 1694 markers |
1,636 |
1,622 | |
|
|
|
ftp |
|
Solignac_3 |
Solignac Linkage Map (AmelMap3) |
2,008 |
2,007 | |
|
|
|
ftp |
|
| Avena sativa |
|
AsXAw_00 |
Diploid Oat, AFLP |
509 |
13 | |
|
|
 |
ftp |
|
| Beta vulgaris |
|
McGrath_05 |
Beta vulgaris genetic map |
319 |
15 | |
|
|
|
ftp |
|
McGrath_07 |
McGrath_07 |
331 |
27 | |
|
|
|
ftp |
|
| Bos taurus |
|
ILTX-2005 |
5000 Rad Cattle RH Map, 2005 Release |
3,484 |
3,396 | |
|
|
|
ftp |
|
MARC |
MARC Bovine Linkage Map |
1,419 |
1,365 | |
|
|
|
ftp |
|
| Brassica napus |
|
BBSRC-SSR |
B. napus, BBSRC-SSR |
225 |
94 | |
|
|
|
ftp |
|
| Brassica rapa |
|
RR2xR-o-18 |
B. rapa, RR2xR-o-18 |
21,024 |
99 | |
|
|
|
ftp |
|
RR2xR-o-18 |
B. rapa, RR2xR-o-18 |
21,024 |
99 | |
|
|
|
ftp |
|
| Brassica napus |
|
N-fo-72-8 |
B. napus, N-fo-72-8 |
272 |
5 | |
|
|
|
ftp |
|
| Brassica rapa |
|
RR2xR-o-18 |
B. rapa, RR2xR-o-18 |
21,024 |
99 | |
|
|
|
ftp |
|
| Brassica napus |
|
piquemal_05 |
B. napus, piquemal_05 |
363 |
80 | |
|
|
|
ftp |
|
| Brassica oleracea |
|
A12xGD-206_2000 |
B. oleracea, A12xGD-206_2000 |
431 |
5 | |
|
|
|
ftp |
|
| Brassica rapa |
|
RR2xR-o-18 |
B. rapa, RR2xR-o-18 |
21,024 |
99 | |
|
|
|
ftp |
|
RR2xR-o-18 |
B. rapa, RR2xR-o-18 |
21,024 |
99 | |
|
|
|
ftp |
|
| Brassica oleracea |
|
NxG-97_2000 |
B. oleracea, NxG-97_2000 |
217 |
4 | |
|
|
|
ftp |
|
| Brassica rapa |
|
RR2xR-o-18 |
B. rapa, RR2xR-o-18 |
21,024 |
99 | |
|
|
|
ftp |
|
| Brassica oleracea |
|
O_Integrated_200 |
B. oleracea, Integrated_2000 |
549 |
5 | |
|
|
|
ftp |
|
| Brassica rapa |
|
RR2xR-o-18 |
B. rapa, RR2xR-o-18 |
21,024 |
99 | |
|
|
|
ftp |
|
RR2xR-o-18 |
B. rapa, RR2xR-o-18 |
21,024 |
99 | |
|
|
|
ftp |
|
| Canis familiaris |
|
RHDF5000 |
Canine 1Mb RH Map |
3,092 |
3,031 | |
|
|
|
ftp |
|
| Cryptococcus neoformans var. neoformans |
|
Cneo B-3501/3502 |
Linkage map of Cryptococcus neoformans var neoformans serotype D |
285 |
279 | |
|
|
|
ftp |
|
| Danio rerio |
|
GAT |
Gates Haploid Panel Map |
433 |
304 | |
|
|
|
ftp |
|
HS |
Heat Shock Diploid Cross Map |
6,070 |
1,423 | |
|
|
|
ftp |
|
LN54 |
Loeb/NIH/5000/4000 Map |
5,592 |
3,366 | |
|
|
|
ftp |
|
MGH |
Boston MGH Cross Map |
3,857 |
1,980 | |
|
|
|
ftp |
|
MOP |
Mother of Pearl Map |
703 |
321 | |
|
|
|
ftp |
|
T51 |
Goodfellow T51 Map |
16,873 |
5,875 | |
|
|
|
ftp |
|
ZMAP |
Zebrafish Genome Integrated Map |
32,178 |
8,351 | |
|
|
|
ftp |
|
| Felis catus |
|
Genetic |
Genetic map of the domestic cat |
328 |
318 | |
|
|
|
ftp |
|
RH |
Domestic cat radiation hybrid Map |
1,800 |
1,794 | |
|
|
|
ftp |
|
RH |
Radiation hybrid map of the domestic cat |
3,576 |
1,782 | |
|
|
|
ftp |
|
RH |
Radiation hybrid map of the domestic cat |
3,576 |
1,782 | |
|
|
|
ftp |
|
| Gallus gallus |
|
WUR |
Wageningen University chicken linkage Map |
2,110 |
960 | |
|
|
|
ftp |
|
| Glycine max |
|
Comp_99 |
Composite Genetic Map 1999 |
2,135 |
595 | |
|
|
|
ftp |
|
Cregan_03 |
2003 Integrated Genetic Linkage Map |
1,848 |
1,011 | |
|
|
|
ftp |
|
| Homo sapiens |
|
GM99-G3 |
Human Transcript Map 99 |
7,056 |
7,040 | |
|
|
|
ftp |
|
GM99-GB4 |
Human Transcript Map 99 |
45,138 |
44,277 | |
|
|
|
ftp |
|
Genethon |
Genethon Human Linkage Map, 1995 release |
5,264 |
5,264 | |
|
|
|
ftp |
|
Marshfield |
Marshfield human genetic Map |
7,698 |
7,694 | |
|
|
|
ftp |
|
NCBI RH |
Computed integrated panel Map |
23,727 |
23,699 | |
|
|
|
ftp |
|
NHGRI-7 |
NHGRI chr 7 Physical Map |
2,117 |
2,117 | |
|
|
|
ftp |
|
SHGC-G3 |
Stanford G3 Map |
7,198 |
7,149 | |
|
|
|
ftp |
|
TNG |
Stanford TNG RH Map |
36,634 |
35,608 | |
|
|
|
ftp |
|
WI-RH |
Whitehead RH Map, July 1997 release |
14,658 |
14,627 | |
|
|
|
ftp |
|
WI-YAC |
Whitehead STS Map, July 1997 release |
10,469 |
10,449 | |
|
|
|
ftp |
|
WUSTL-X |
WashU Chr. X STS Map |
1,664 |
1,662 | |
|
|
|
ftp |
|
deCODE |
deCODE high resolution genetic Map |
5,135 |
5,012 | |
|
|
|
ftp |
|
| Hordeum bulbosum |
|
Hbulbosum_2001 |
H.bulbosum, PB1 x PB11 |
138 |
1 | |
|
|
|
ftp |
|
| Hordeum vulgare |
|
AxK_2001 |
Barley, AxK |
309 |
45 | |
|
|
|
ftp |
|
Cons95 |
Barley consensus |
587 |
28 | |
|
|
|
ftp |
|
Cons96 |
Barley consensus 2 |
880 |
36 | |
|
|
|
ftp |
|
IxF_03 |
Barley, Igri x Franka, SSR |
105 |
13 | |
|
|
|
ftp |
|
IxF_94 |
IxF personally communicated from A. Graner via D. Matthews |
376 |
9 | |
|
|
|
ftp |
|
KxM_00 |
Barley, KxM |
229 |
6 | |
|
|
|
ftp |
|
NABGMP00 |
Barley, HxT |
177 |
16 | |
|
|
|
ftp |
|
NABGMP93 |
Barley, SxM |
327 |
16 | |
|
|
|
ftp |
|
OWB_04 |
Barley, OWB, 2004 |
205 |
55 | |
|
|
|
ftp |
|
VxHs |
Barley, VxHs |
163 |
1 | |
|
|
|
ftp |
|
| Lotus japonicus |
|
Lf_X_Lj_02 |
Lotus japonicus genetic map |
608 |
35 | |
|
|
|
ftp |
|
| Macaca mulatta |
|
RH |
First Generation RH Map |
801 |
793 | |
|
|
|
ftp |
|
| Manihot esculenta |
|
cassava_F_05 |
cassava_F_genetic_map |
206 |
90 | |
|
|
|
ftp |
|
cassava_M_05 |
cassava_M_genetic_map |
139 |
59 | |
|
|
|
ftp |
|
| Medicago sativa |
|
Julier_composite |
Tetraploid Composite Genetic |
107 |
82 | |
|
|
|
ftp |
|
| Meleagris gallopavo |
|
UMN |
University of Minnesota Turkey Genetic Linkage Map |
354 |
342 | |
|
|
|
ftp |
|
| Mus musculus |
|
MGI |
Mouse Genome Database genetic Map |
18,221 |
15,109 | |
|
|
|
ftp |
|
WI-Genetic |
Whitehead Mouse Genetic Map |
6,536 |
6,518 | |
|
|
|
ftp |
|
WI-YAC |
Whitehead Mouse YAC Map |
7,578 |
7,569 | |
|
|
|
ftp |
|
WI/MRC RH |
Whitehead-MRC RH Mouse Map v12 |
14,158 |
13,813 | |
|
|
|
ftp |
|
| Oryza sativa |
|
JP_HD_00 |
Latest High-density Rice Genetic Map |
3,278 |
53 | |
|
|
|
ftp |
|
JP_HD_98 |
High-density Rice Genetic Map |
2,286 |
53 | |
|
|
|
ftp |
|
RX97 |
Huazhong RFLP 1997 |
63,420 |
459 | |
|
|
|
ftp |
|
RX97 |
Huazhong RFLP 1997 |
63,420 |
459 | |
|
|
|
ftp |
|
RM00 |
Rice Morph 2000 |
2,276 |
44 | |
|
|
|
ftp |
|
RX97 |
Huazhong RFLP 1997 |
63,420 |
459 | |
|
|
|
ftp |
|
RX97 |
Huazhong RFLP 1997 |
63,420 |
459 | |
|
|
|
ftp |
|
RX97 |
Huazhong RFLP 1997 |
63,420 |
459 | |
|
|
|
ftp |
|
RX97 |
Huazhong RFLP 1997 |
63,420 |
459 | |
|
|
|
ftp |
|
RX97 |
Huazhong RFLP 1997 |
63,420 |
459 | |
|
|
|
ftp |
|
RM00 |
Rice Morph 2000 |
2,276 |
44 | |
|
|
|
ftp |
|
RX97 |
Huazhong RFLP 1997 |
63,420 |
459 | |
|
|
|
ftp |
|
RX97 |
Huazhong RFLP 1997 |
63,420 |
459 | |
|
|
|
ftp |
|
RX97 |
Huazhong RFLP 1997 |
63,420 |
459 | |
|
|
|
ftp |
|
| Ovis aries |
|
CAB |
CAB Ovine Linkage Map |
883 |
877 | |
|
|
|
ftp |
|
SM4.2 |
SheepMap linkage Map v4.2 |
1,265 |
1,085 | |
|
|
|
ftp |
|
SM4.7 |
SheepMap4.7 |
1,411 |
1,210 | |
|
|
|
ftp |
|
| Phaseolus vulgaris |
|
Gepts98 |
Freyre 98 |
234 |
1 | |
|
|
|
ftp |
|
| Plasmodium falciparum |
|
NIAID |
NIAID Genetic Map |
846 |
844 | |
|
|
|
ftp |
|
| Populus trichocarpa |
|
Tuskan_04 |
Tuskan_04 |
540 |
88 | |
|
|
|
ftp |
|
| Quercus robur |
|
Barreneche_98m |
Barreneche male 1998 |
630 |
25 | |
|
|
|
ftp |
|
Barreneche_98m |
Barreneche male 1998 |
630 |
25 | |
|
|
|
ftp |
|
| Rattus norvegicus |
|
FHH x ACI.7 |
Rat FHH x ACI F2 intercross genetic Map |
686 |
684 | |
|
|
|
ftp |
|
RH map.3.4 |
Rat radiation hybrid Map |
24,328 |
24,142 | |
|
|
|
ftp |
|
SHRSP x BN.7 |
Rat SHRSP x BN F2 intercross genetic Map |
2,025 |
2,016 | |
|
|
|
ftp |
|
| Secale cereale |
|
Borner_01 |
Rye, P87 x P105, update |
214 |
12 | |
|
|
|
ftp |
|
Borner_04 |
Rye, P87 x P105, 2004 |
138 |
13 | |
|
|
|
ftp |
|
E_01 |
Rye, UC90 x E-line |
191 |
2 | |
|
|
|
ftp |
|
UxE_01 |
Rye UC90 x E-line |
189 |
2 | |
|
|
|
ftp |
|
| Solanum lycopersicum |
|
LEXLP_00 |
Tomato EXPEN 2000 |
1,138 |
104 | |
|
|
|
ftp |
|
| Solanum tuberosum |
|
SCRI_98 |
SCRI 1998 |
822 |
28 | |
|
|
|
ftp |
|
SCRI_98 |
SCRI 1998 |
822 |
28 | |
|
|
|
ftp |
|
| Sorghum bicolor |
|
Hart00 |
Bhattramakki et al 2000 |
469 |
144 | |
|
|
|
ftp |
|
Hart99 |
Kong et al 2000 |
145 |
33 | |
|
|
|
ftp |
|
Klein00 |
Klein 2000 |
2,768 |
139 | |
|
|
|
ftp |
|
Klein04 |
Klein 2004 |
2,988 |
148 | |
|
|
|
ftp |
|
| Sus scrofa |
|
MARC |
MARC Porcine Linkage Map |
1,283 |
1,232 | |
|
|
|
ftp |
|
| Tribolium castaneum |
|
TCLM |
Tribolium casteneum Linkage Map |
396 |
396 | |
|
|
|
ftp |
|
| Triticum aestivum |
|
AxF_03 |
Arina x Forno |
282 |
149 | |
|
|
|
ftp |
|
FxO_99 |
Forno x Oberkulmer 1999 |
185 |
8 | |
|
|
|
ftp |
|
RFLP_95 |
Synthetic-Opata Map |
980 |
5 | |
|
|
|
ftp |
|
RFLP_95 |
Synthetic-Opata Map |
980 |
5 | |
|
|
|
ftp |
|
SSR_00 |
Synthetic-Opata BARC SSR |
1,411 |
423 | |
|
|
|
ftp |
|
SSR_02 |
Synthetic-Opata 2002 SSR |
309 |
61 | |
|
|
|
ftp |
|
SSR_04 |
Consensus SSR |
1,234 |
776 | |
|
|
|
ftp |
|
SSR_98 |
Synthetic-Opata 1998 SSR |
563 |
228 | |
|
|
|
ftp |
|
| Triticum turgidum |
|
JKxC_00 |
T.turgidum, JK x Cham1 |
316 |
23 | |
|
|
|
ftp |
|
| Vitis vinifera |
|
A1_C_SG |
A1_C_SG |
256 |
233 | |
|
|
|
ftp |
|
A2_Riesling |
A2_Riesling |
108 |
104 | |
|
|
|
ftp |
|
DG_C_ChXBi |
DG_C_ChXBi |
314 |
285 | |
|
|
|
ftp |
|
DG_F_Chardonnay |
DG_F_Chardonnay |
245 |
231 | |
|
|
|
ftp |
|
DG_M_Bianca |
DG_M_Bianca |
263 |
248 | |
|
|
|
ftp |
|
D_C_Apy |
D_C_Apy |
214 |
192 | |
|
|
|
ftp |
|
D_F_2223 |
D_F_2223 |
157 |
148 | |
|
|
|
ftp |
|
D_M_2121 |
D_M_2121 |
184 |
172 | |
|
|
|
ftp |
|
Grenache_031220 |
Grenache_031220 |
179 |
173 | |
|
|
|
ftp |
|
Integrated_07 |
Integrated_07 |
515 |
413 | |
|
|
|
ftp |
|
Integrated_fw_07 |
Integrated_fw_07 |
257 |
247 | |
|
|
|
ftp |
|
R_C_RiXCS |
R_C_RiXCS |
172 |
157 | |
|
|
|
ftp |
|
R_F_Riesling |
R_F_Riesling |
138 |
129 | |
|
|
|
ftp |
|
R_M_CabernetS |
R_M_CabernetS |
144 |
135 | |
|
|
|
ftp |
|
Riesling_031220 |
Riesling_031220 |
100 |
97 | |
|
|
|
ftp |
|
SG_031220 |
SG_031220 |
220 |
212 | |
|
|
|
ftp |
|
Syrah_031220 |
Syrah_031220 |
174 |
168 | |
|
|
|
ftp |
|
| Zea mays |
|
Bins |
bins |
6,626 |
1,071 | |
|
|
|
ftp |
|
EBF35 |
EBF 1935 |
62 |
4 | |
|
|
|
ftp |
|
Gene_05 |
Genetic 2005 |
2,463 |
48 | |
|
|
|
ftp |
|
IBM00 |
IBM 2000 |
365 |
290 | |
|
|
|
ftp |
|
IBM02 |
IBM1 |
1,648 |
767 | |
|
|
|
ftp |
|
MW99 |
CU 99 |
545 |
8 | |
|
|
|
ftp |
|
NPI90 |
NPI 1990 |
470 |
13 | |
|
|
|
ftp |
|
UMC98 |
UMC 98 |
1,739 |
32 | |
|
|
|
ftp |
|
|
1Among markers mapped in the map, a subset of markers that are STSs and with available primer sequences were imported to UniSTS.
2 PubMed, MapViewer, data source. Clicking on the will display the first chromosome using the Map Viewer.
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Last Updated August 27, 2007 |
|
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