| | Other Issues: previous | next | latest | archiveBrief Reports Analysis by siRNA_profile program displays novel thermodynamic characteristics of highly functional siRNA molecules Pirkko Muhonen, Ranga N Parthasarathy, Anthony J Janckila, Kalman G Büki, and H Kalervo Väänänen Source Code Biol Med. 2008; 3: 8. Published online 2008 May 21. doi: 10.1186/1751-0473-3-8.PMCID: PMC2424050 FASH: A web application for nucleotides sequence search Isana Veksler-Lublinksy, Danny Barash, Chai Avisar, Einav Troim, Paul Chew, and Klara Kedem Source Code Biol Med. 2008; 3: 9. Published online 2008 May 27. doi: 10.1186/1751-0473-3-9.PMCID: PMC2426692 Methodology Simple tools for assembling and searching high-density picolitre pyrophosphate sequence data Nicolas J Parker and Andrew G Parker Source Code Biol Med. 2008; 3: 5. Published online 2008 April 18. doi: 10.1186/1751-0473-3-5.PMCID: PMC2374781 CRANKITE: A fast polypeptide backbone conformation sampler Alexei A Podtelezhnikov and David L Wild Source Code Biol Med. 2008; 3: 12. Published online 2008 June 24. doi: 10.1186/1751-0473-3-12.PMCID: PMC2443148 Boolean network simulations for life scientists István Albert, Juilee Thakar, Song Li, Ranran Zhang, and Réka Albert Source Code Biol Med. 2008; 3: 16. Published online 2008 November 14. doi: 10.1186/1751-0473-3-16.PMCID: PMC2603008 Research Epigrass: a tool to study disease spread in complex networks Flávio C Coelho, Oswaldo G Cruz, and Cláudia T Codeço Source Code Biol Med. 2008; 3: 3. Published online 2008 February 26. doi: 10.1186/1751-0473-3-3.PMCID: PMC2275240 The MERG Suite: Tools for discovering competencies and associated learning resources Ravi Teja Bhupatiraju, William R Hersh, Valerie Smothers, Michael Fordis, and Peter S Greene Source Code Biol Med. 2008; 3: 7. Published online 2008 May 14. doi: 10.1186/1751-0473-3-7.PMCID: PMC2416363 Wndchrm – an open source utility for biological image analysis Lior Shamir, Nikita Orlov, D Mark Eckley, Tomasz Macura, Josiah Johnston, and Ilya G Goldberg Source Code Biol Med. 2008; 3: 13. Published online 2008 July 8. doi: 10.1186/1751-0473-3-13.PMCID: PMC2478650 Software Reviews Faunus: An object oriented framework for molecular simulation Mikael Lund, Martin Trulsson, and Björn Persson Source Code Biol Med. 2008; 3: 1. Published online 2008 February 1. doi: 10.1186/1751-0473-3-1.PMCID: PMC2266748 LSID Tester, a tool for testing Life Science Identifier resolution services Roderic DM Page Source Code Biol Med. 2008; 3: 2. Published online 2008 February 18. doi: 10.1186/1751-0473-3-2.PMCID: PMC2276318 A Perl toolkit for LIMS development James A Morris, Simon A Gayther, Ian J Jacobs, and Christopher Jones Source Code Biol Med. 2008; 3: 4. Published online 2008 March 19. doi: 10.1186/1751-0473-3-4.PMCID: PMC2322998 The Multiscale Systems Immunology project: software for cell-based immunological simulation Faheem Mitha, Timothy A Lucas, Feng Feng, Thomas B Kepler, and Cliburn Chan Source Code Biol Med. 2008; 3: 6. Published online 2008 April 28. doi: 10.1186/1751-0473-3-6.PMCID: PMC2426691 Flow: Statistics, visualization and informatics for flow cytometry Jacob Frelinger, Thomas B Kepler, and Cliburn Chan Source Code Biol Med. 2008; 3: 10. Published online 2008 June 17. doi: 10.1186/1751-0473-3-10.PMCID: PMC2442075 OSPACS: Ultrasound image management system Will Stott, Andy Ryan, Ian J Jacobs, Usha Menon, Conrad Bessant, and Christopher Jones Source Code Biol Med. 2008; 3: 11. Published online 2008 June 20. doi: 10.1186/1751-0473-3-11.PMCID: PMC2442597 Microbial Diagnostic Array Workstation (MDAW): a web server for diagnostic array data storage, sharing and analysis Joy Scaria, Aswathy Sreedharan, and Yung-Fu Chang Source Code Biol Med. 2008; 3: 14. Published online 2008 September 23. doi: 10.1186/1751-0473-3-14.PMCID: PMC2563012 Permutation – based statistical tests for multiple hypotheses Anyela Camargo, Francisco Azuaje, Haiying Wang, and Huiru Zheng Source Code Biol Med. 2008; 3: 15. Published online 2008 October 21. doi: 10.1186/1751-0473-3-15.PMCID: PMC2611984 |