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proteincyclophilin A simulated on Cheetah supercomputer
Multi-scale modeling of protein vibrations in HIV infection related protein cyclophilin A.This work is being performed by Pratul K. Agarwal on Cheetah supercomputer.

The Computational Biology Institute

The Computational Biology Institute (CBI) combines the expertise of biologists, computer scientists, and mathematicians with high performance computing to create and provide tools and infrastructure to advance systems and computational biology.

Mission: To provide innovative computational biology and computing methods, algorithms, systems and infrastructures to support systems biology activities, particularly those focused on mammalian genetics and the DOE Genomes to Life Initiative (GTL).




Early Accomplishments of CBI

  • Community Workshop for the Genomes to Life Facility on Characterizing and Imaging Molecular Machines - experimental and computing roadmap (3/03)
  • Biology Workshop on Introduction to the Cray X1 (5/9/03)
  • Organized GTL Workshops on Data and Tools, Modeling and Simulation, and Protein Structure Prediction (7/22-24/03)
  • AMBER ported to Cray X1



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