| | Articles Nucleic Acids Res. 2003 November 15; 31(22): 6381–6382. doi: 10.1093/nar/gkg862.PMCID: PMC275557 SURVEY AND SUMMARY: Roles of 5-substituents of tRNA wobble uridines in the recognition of purine-ending codons Kazuyuki Takai and Shigeyuki Yokoyama PMCID: PMC275538 SURVEY AND SUMMARY: Comparative analysis of editosome proteins in trypanosomatids Elizabeth A. Worthey, Achim Schnaufer, I. Saira Mian, Kenneth Stuart, and Reza Salavati PMCID: PMC275564 A DNA translocation motif in the bacterial transcription–repair coupling factor, Mfd A. L. Chambers, A. J. Smith, and N. J. Savery PMCID: PMC275562 Kissing complex-mediated dimerisation of HIV-1 RNA: coupling extended duplex formation to ribozyme cleavage Nikolai Windbichler, Michael Werner, and Renée Schroeder PMCID: PMC275567 In vitro and in vivo modulations of benzo[c]phenanthrene–DNA adducts by DNA mismatch repair system Jianxin Wu, Bei-Bei Zhu, Jin Yu, Hong Zhu, Lu Qiu, Mark S. Kindy, Liya Gu, Albrecht Seidel, and Guo-Min Li PMCID: PMC275569 RNomics in Escherichia coli detects new sRNA species and indicates parallel transcriptional output in bacteria Jörg Vogel, Verena Bartels, Thean Hock Tang, Gennady Churakov, Jacoba G. Slagter-Jäger, Alexander Hüttenhofer, and E. Gerhart H. Wagner PMCID: PMC275561 Nucleotide sequence homology requirements of HIV-1-specific short hairpin RNA Oliver Pusch, Daniel Boden, Rebecca Silbermann, Fred Lee, Lynne Tucker, and Bharat Ramratnam PMCID: PMC275570 DNA–protein cross-linking by trans-[PtCl2(E-iminoether)2]. A concept for activation of the trans geometry in platinum antitumor complexes Olga Novakova, Jana Kasparkova, Jaroslav Malina, Giovanni Natile, and Viktor Brabec PMCID: PMC275558 Solution structures of stem–loop RNAs that bind to the two N-terminal RNA-binding domains of nucleolin L. David Finger, Lukas Trantirek, Carina Johansson, and Juli Feigon PMCID: PMC275560 Enhancement of DNA, cDNA synthesis and fidelity at high temperatures by a dimeric single-stranded DNA-binding protein Celia Perales, Felipe Cava, Wilfried J. J. Meijer, and José Berenguer PMCID: PMC275559 Nucleic acid binding properties of the nucleic acid chaperone domain of hepatitis delta antigen Chun-Chung Wang, Tsung-Cheng Chang, Ching-Wen Lin, Hsiu-Ling Tsui, Page B. C. Chu, Bo-Shun Chen, Zhi-Shun Huang, and Huey-Nan Wu PMCID: PMC275553 Site-selective in vivo targeting of cytosine-5 DNA methylation by zinc-finger proteins Christopher D. Carvin, Rebecca D. Parr, and Michael P. Kladde PMCID: PMC275549 Arginine/serine repeats are sufficient to constitute a splicing activation domain Dana Philipps, Alicia M. Celotto, Qiao-Qiao Wang, Rosa S. Tarng, and Brenton R. Graveley PMCID: PMC275541 Identification of a new RNA·RNA interaction site for human telomerase RNA (hTR): structural implications for hTR accumulation and a dyskeratosis congenita point mutation Xiaojun Ren, Gérald Gavory, Haitao Li, Liming Ying, David Klenerman, and Shankar Balasubramanian PMCID: PMC275565 The complete genome sequence and analysis of Corynebacterium diphtheriae NCTC13129 A. M. Cerdeño-Tárraga, A. Efstratiou, L. G. Dover, M. T. G. Holden, M. Pallen, S. D. Bentley, G. S. Besra, C. Churcher, K. D. James, A. De Zoysa, T. Chillingworth, A. Cronin, L. Dowd, T. Feltwell, N. Hamlin, S. Holroyd, K. Jagels, S. Moule, M. A. Quail, E. Rabbinowitsch, K. M. Rutherford, N. R. Thomson, L. Unwin, S. Whitehead, B. G. Barrell, and J. Parkhill PMCID: PMC275568 In vitro RNP assembly and methylation guide activity of an unusual box C/D RNA, cis-acting archaeal pre-tRNATrp Marie-Line Bortolin, Jean-Pierre Bachellerie, and Béatrice Clouet-d'Orval PMCID: PMC275556 Mononucleotide derivatives as ribosomal P-site substrates reveal an important contribution of the 2′-OH to activity Silke Dorner, Claudia Panuschka, Walther Schmid, and Andrea Barta PMCID: PMC275539 Identification of 13 novel human modification guide RNAs Patrice Vitali, Hélène Royo, Hervé Seitz, Jean-Pierre Bachellerie, Alexander Hüttenhofer, and Jérôme Cavaillé PMCID: PMC275545 Bidirectional replication from an internal ori site of the linear N15 plasmid prophage Nikolai V. Ravin, Victor V. Kuprianov, Eddie B. Gilcrease, and Sherwood R. Casjens PMCID: PMC275552 Deletion in a (T)8 microsatellite abrogates expression regulation by 3′-UTR Tina Ruggiero, Martina Olivero, Antonia Follenzi, Luigi Naldini, Raffaele Calogero, and Maria Flavia Di Renzo PMCID: PMC275554 Gene essentiality determines chromosome organisation in bacteria Eduardo P. C. Rocha and Antoine Danchin PMCID: PMC275555 Deleterious mutation prediction in the secondary structure of RNAs Danny Barash PMCID: PMC275566 p53 stimulates human topoisomerase I activity by modulating its DNA binding Kent Søe and Frank Grosse PMCID: PMC275542 Human let-7 stem–loop precursors harbor features of RNase III cleavage products Eugenia Basyuk, Florence Suavet, Alain Doglio, Rémy Bordonné, and Edouard Bertrand PMCID: PMC275551 Molecular determinants of the hpa regulatory system of Escherichia coli: the HpaR repressor Beatriz Galán, Annie Kolb, Jesús M. Sanz, José Luis García, and María A. Prieto PMCID: PMC275547 Host specificity of mollicutes oriC plasmids: functional analysis of replication origin Carole Lartigue, Alain Blanchard, Joël Renaudin, François Thiaucourt, and Pascal Sirand-Pugnet PMCID: PMC275544 Silencing of Toll pathway components by direct injection of double-stranded RNA into Drosophila adult flies Akira Goto, Stéphanie Blandin, Julien Royet, Jean-Marc Reichhart, and Elena A. Levashina PMCID: PMC275548 DNA damage induces transcriptional activation of p73 by removing C-EBPα repression on E2F1 Mirko Marabese, Faina Vikhanskaya, Cristina Rainelli, Toshiyuki Sakai, and Massimo Broggini PMCID: PMC275563 Enzyme-specific profiles for genome annotation: PRIAM Clotilde Claudel-Renard, Claude Chevalet, Thomas Faraut, and Daniel Kahn PMCID: PMC275543 Critical role of charged residues in helix 7 of the ligand binding domain in Hepatocyte Nuclear Factor 4α dimerisation and transcriptional activity Jérôme Eeckhoute, Bénédicte Oxombre, Pierre Formstecher, Philippe Lefebvre, and Bernard Laine PMCID: PMC275546 Left-handedly curved DNA regulates accessibility to cis-DNA elements in chromatin Jun-ichi Nishikawa, Miho Amano, Yoshiro Fukue, Shigeo Tanaka, Haruka Kishi, Yoshiko Hirota, Kinya Yoda, and Takashi Ohyama PMCID: PMC275550 Molecular flip–flops formed by overlapping Fis sites Paul N. Hengen, Ilya G. Lyakhov, Lisa E. Stewart, and Thomas D. Schneider PMCID: PMC275571 Identification of factors influencing strand bias in oligonucleotide-mediated recombination in Escherichia coli Xin-tian Li, Nina Costantino, Lin-yu Lu, De-pei Liu, Rory M. Watt, Kathryn S. E. Cheah, Donald L. Court, and Jian-Dong Huang PMCID: PMC275540 NAR Methods Online Demonstration of preferential binding of SYBR Green I to specific DNA fragments in real-time multiplex PCR Steven Giglio, Paul T. Monis, and Christopher P. Saint PMCID: PMC275573 Polylysine-coated mica can be used to observe systematic changes in the supercoiled DNA conformation by scanning force microscopy in solution Malte Bussiek, Norbert Mücke, and Jörg Langowski PMCID: PMC275574 Sizing of single fluorescently stained DNA fragments by scanning microscopy Stephan Laib, Michael Rankl, Thomas Ruckstuhl, and Stefan Seeger PMCID: PMC275575 Direct measurement of lymphocyte receptor diversity Brenda M. Ogle, Marilia Cascalho, Cristina Joao, William Taylor, Lori J. West, and Jeffrey L. Platt PMCID: PMC275576 Unidirectional Cre-mediated genetic inversion in mice using the mutant loxP pair lox66/lox71 Philipp Oberdoerffer, Kevin L. Otipoby, Mitsuo Maruyama, and Klaus Rajewsky PMCID: PMC275577 FELINES: a utility for extracting and examining EST-defined introns and exons Scott D. Drabenstot, Doris M. Kupfer, James D. White, David W. Dyer, Bruce A. Roe, Kent L. Buchanan, and Juneann W. Murphy PMCID: PMC275578 Global amplification of mRNA by template-switching PCR: linearity and application to microarray analysis L. Petalidis, S. Bhattacharyya, G. A. Morris, V. P. Collins, T. C. Freeman, and P. A. Lyons PMCID: PMC275579 Thermodynamically balanced inside-out (TBIO) PCR-based gene synthesis: a novel method of primer design for high-fidelity assembly of longer gene sequences Xinxin Gao, Peggy Yo, Andrew Keith, Timothy J. Ragan, and Thomas K. Harris PMCID: PMC275580 Projector: automatic contig mapping for gap closure purposes Sacha A. F. T. van Hijum, Aldert L. Zomer, Oscar P. Kuipers, and Jan Kok PMCID: PMC275581 Quick two-step RNA ligation employing periodate oxidation Shinya Kurata, Takashi Ohtsuki, Tsutomu Suzuki, and Kimitsuna Watanabe PMCID: PMC275582 Viral and microbial genotyping by a combination of multiplex competitive hybridization and specific extension followed by hybridization to generic tag arrays Baback Gharizadeh, Max Käller, Pål Nyrén, Anders Andersson, Mathias Uhlén, Joakim Lundeberg, and Afshin Ahmadian PMCID: PMC275583 High efficiency, site-specific excision of a marker gene by the phage P1 cre–loxP system in the yellow fever mosquito, Aedes aegypti Nijole Jasinskiene, Craig J. Coates, Aurora Ashikyan, and Anthony A. James PMCID: PMC275584 Erratum Nucleic Acids Res. 2003 November 15; 31(22): 6688. doi: 10.1093/nar/gkg885.PMCID: PMC275572 Corrects: Ales Tichopad, et al. Standardized determination of real-time PCR efficiency from a single reaction set-up. Nucleic Acids Res. 2003 October 15; 31(20): e122. |
