| | Articles Differential transcription factor occupancy but evolutionarily conserved chromatin features at the human and mouse M-CSF (CSF-1) receptor loci George A. Follows, Hiromi Tagoh, Pascal Lefevre, Gareth J. Morgan, and Constanze Bonifer PMCID: PMC219482 Use of locked nucleic acid oligonucleotides to add functionality to plasmid DNA Kirsten M. L. Hertoghs, Jonathan H. Ellis, and Ian R. Catchpole PMCID: PMC219479 Synergistic repression of anaerobic genes by Mot3 and Rox1 in Saccharomyces cerevisiae Odeniel Sertil, Rachna Kapoor, Brian D. Cohen, Natalia Abramova, and Charles V. Lowry PMCID: PMC219473 Genetic and biochemical interactions between SCP160 and EAP1 in yeast Bryce A. Mendelsohn, Ai-min Li, Claudia A. Vargas, Kristen Riehman, Alice Watson, and Judith L. Fridovich-Keil PMCID: PMC219487 Modification of the ionizing radiation response in living cells by an scFv against the DNA-dependent protein kinase Shuyi Li, Yoshihiko Takeda, Stéphanie Wragg, John Barrett, Andrew Phillips, and William S. Dynan PMCID: PMC219464 NMR structure of an α-L-LNA:RNA hybrid: structural implications for RNase H recognition Jakob T. Nielsen, Paul C. Stein, and Michael Petersen PMCID: PMC219478 The positive and negative regulation of Tn10 transposition by IHF is mediated by structurally asymmetric transposon arms Sven Sewitz, Paul Crellin, and Ronald Chalmers PMCID: PMC219475 An organism-specific method to rank predicted coding regions in Trypanosoma brucei Shuba Gopal, George A. M. Cross, and Terry Gaasterland PMCID: PMC219476 Modulation of gene expression in Leishmania drug resistant mutants as determined by targeted DNA microarrays Chantal Guimond, Nathalie Trudel, Christian Brochu, Nathalie Marquis, Amal El Fadili, Régis Peytavi, Guylaine Briand, Dave Richard, Nadine Messier, Barbara Papadopoulou, Jacques Corbeil, Michel G. Bergeron, Danielle Légaré, and Marc Ouellette PMCID: PMC219483 Effects of genomic context and chromatin structure on transcription-coupled and global genomic repair in mammalian cells Zhaohui Feng, Wenwei Hu, Lawrence A. Chasin, and Moon-shong Tang PMCID: PMC219485 The complete nucleotide sequence and RNA editing content of the mitochondrial genome of rapeseed (Brassica napus L.): comparative analysis of the mitochondrial genomes of rapeseed and Arabidopsis thaliana Hirokazu Handa PMCID: PMC219474 Hexameric RSF1010 helicase RepA: the structural and functional importance of single amino acid residues Günter Ziegelin, Timo Niedenzu, Rudi Lurz, Wolfram Saenger, and Erich Lanka PMCID: PMC219471 Structural study of DNA duplex containing an N-(2-deoxy-β-d-erythro-pentofuranosyl) formamide frameshift by NMR and restrained molecular dynamics C. Maufrais, G. V. Fazakerley, J. Cadet, and Y. Boulard PMCID: PMC219481 Sox6 regulation of cardiac myocyte development Orit Cohen-Barak, Zanhua Yi, Nobuko Hagiwara, Koshiro Monzen, Issei Komuro, and Murray H. Brilliant PMCID: PMC219484 Antizyme frameshifting as a functional probe of eukaryotic translational termination Zemfira N. Karamysheva, Andrey L. Karamyshev, Koichi Ito, Takashi Yokogawa, Kazuya Nishikawa, Yoshikazu Nakamura, and Senya Matsufuji PMCID: PMC219470 The inflammation-induced down-regulation of plasma Fetuin-A (α2HS-Glycoprotein) in liver results from the loss of interaction between long C/EBP isoforms at two neighbouring binding sites Christophe Gangneux, Maryvonne Daveau, Martine Hiron, Céline Derambure, John Papaconstantinou, and Jean-Philippe Salier PMCID: PMC219469 A molecular dynamics simulation study of oriented DNA with polyamine and sodium counterions: diffusion and averaged binding of water and cations Nikolay Korolev, Alexander P. Lyubartsev, Aatto Laaksonen, and Lars Nordenskiöld PMCID: PMC219480 RNA cleaving ‘10-23’ DNAzymes with enhanced stability and activity Steffen Schubert, Deniz C. Gül, Hans-Peter Grunert, Heinz Zeichhardt, Volker A. Erdmann, and Jens Kurreck PMCID: PMC219472 π Protein- and ATP-dependent transitions from ‘closed’ to ‘open’ complexes at the γ ori of plasmid R6K Ricardo Krüger and Marcin Filutowicz PMCID: PMC219486 Human RNA polymerase II is partially blocked by DNA adducts derived from tumorigenic benzo[c]phenanthrene diol epoxides: relating biological consequences to conformational preferences Thomas M. Schinecker, Rebecca A. Perlow, Suse Broyde, Nicholas E. Geacintov, and David A. Scicchitano PMCID: PMC219463 Distance preferences in the arrangement of binding motifs and hierarchical levels in organization of transcription regulatory information Vsevolod J. Makeev, Alexander P. Lifanov, Anna G. Nazina, and Dmitri A. Papatsenko PMCID: PMC219477 Dissimilar mispair-recognition spectra of Arabidopsis DNA-mismatch-repair proteins MSH2·MSH6 (MutSα) and MSH2·MSH7 (MutSγ) Shiau-Yin Wu, Kevin Culligan, Meindert Lamers, and John Hays PMCID: PMC219466 Solvation change and ion release during aminoacylation by aminoacyl-tRNA synthetases Rajat Banerjee, Amit Kumar Mandal, Rajesh Saha, Soumi Guha, Soma Samaddar, Anusree Bhattacharyya, and Siddhartha Roy PMCID: PMC219465 A compositional segmentation of the human mitochondrial genome is related to heterogeneities in the guanine mutation rate David C. Samuels, Richard J. Boys, Daniel A. Henderson, and Patrick F. Chinnery PMCID: PMC219467 Detection of regulatory circuits by integrating the cellular networks of protein–protein interactions and transcription regulation Esti Yeger-Lotem and Hanah Margalit PMCID: PMC219468 NAR Methods Online Sequential DEXAS: a method for obtaining DNA sequences from genomic DNA and blood in one reaction Michael Motz, Gregor Sagner, Svante Pääbo, and Christian Kilger PMCID: PMC219489 Standardized determination of real-time PCR efficiency from a single reaction set-up Ales Tichopad, Michael Dilger, Gerhard Schwarz, and Michael W. Pfaffl PMCID: PMC219490 A novel real-time quantitative PCR method using attached universal template probe Yuanli Zhang, Dabing Zhang, Wenquan Li, Jianqun Chen, Yufa Peng, and Wei Cao PMCID: PMC219491 Pentaprobe: a comprehensive sequence for the one-step detection of DNA-binding activities Ann H. Y. Kwan, Robert Czolij, Joel P. Mackay, and Merlin Crossley PMCID: PMC219492 Sequence-specific fluorescent labeling of double-stranded DNA observed at the single molecule level Bénédicte Géron-Landre, Thibaut Roulon, Pierre Desbiolles, and Christophe Escudé PMCID: PMC219493 Corrigendum Nucleic Acids Res. 2003 October 15; 31(20): 6062. doi: 10.1093/nar/gkg837.PMCID: PMC219488 Corrects: Isabelle Salles-Passador, et al. Phosphorylation of the PCNA binding domain of the large subunit of replication factor C on Thr506 by cyclin-dependent kinases regulates binding to PCNA. Nucleic Acids Res. 2003 September 1; 31(17): 5202–5211. |
