| | Articles DNA supercoiling enables the Type IIS restriction enzyme BspMI to recognise the relative orientation of two DNA sequences Isabel J. Kingston, Niall A. Gormley, and Stephen E. Halford Nucleic Acids Res. 2003 September 15; 31(18): 5221–5228. doi: 10.1093/nar/gkg743.PMCID: PMC203326 Rad52 and Ku bind to different DNA structures produced early in double-strand break repair Dejan Ristic, Mauro Modesti, Roland Kanaar, and Claire Wyman Nucleic Acids Res. 2003 September 15; 31(18): 5229–5237. doi: 10.1093/nar/gkg729.PMCID: PMC203314 Differential regulation of the glucose-6-phosphatase TATA box by intestine-specific homeodomain proteins CDX1 and CDX2 Amandine Gautier-Stein, Claire Domon-Dell, Alexandre Calon, Isabelle Bady, Jean-Noël Freund, Gilles Mithieux, and Fabienne Rajas Nucleic Acids Res. 2003 September 15; 31(18): 5238–5246. doi: 10.1093/nar/gkg747.PMCID: PMC203330 The structural integrity exerted by N-terminal pyroglutamate is crucial for the cytotoxicity of frog ribonuclease from Rana pipiens You-Di Liao, Sui-Chi Wang, Ying-Jen Leu, Chiu-Feng Wang, Shu-Ting Chang, Yu-Ting Hong, Yun-Ru Pan, and Chinpan Chen Nucleic Acids Res. 2003 September 15; 31(18): 5247–5255. doi: 10.1093/nar/gkg746.PMCID: PMC203329 Light-mediated regulation defines a minimal promoter region of TOP2 G. H. C. M. Hettiarachchi, Vandana Yadav, M. K. Reddy, Sudip Chattopadhyay, and Sudhir K. Sopory Nucleic Acids Res. 2003 September 15; 31(18): 5256–5265. doi: 10.1093/nar/gkg744.PMCID: PMC203327 Ligand-independent activation of estrogen receptor α by XBP-1 Lihua Ding, Jinghua Yan, Jianhua Zhu, Hongjun Zhong, Qiujun Lu, Zonghua Wang, Cuifen Huang, and Qinong Ye Nucleic Acids Res. 2003 September 15; 31(18): 5266–5274. doi: 10.1093/nar/gkg731.PMCID: PMC203316 On the mechanism of strand assimilation by the herpes simplex virus type-1 single-strand DNA-binding protein (ICP8) Amitabh V. Nimonkar and Paul E. Boehmer Nucleic Acids Res. 2003 September 15; 31(18): 5275–5281. doi: 10.1093/nar/gkg740.PMCID: PMC203323 Cationic phosphoramidate α-oligonucleotides efficiently target single-stranded DNA and RNA and inhibit hepatitis C virus IRES-mediated translation Thibaut Michel, Camille Martinand-Mari, Françoise Debart, Bernard Lebleu, Ian Robbins, and Jean-Jacques Vasseur Nucleic Acids Res. 2003 September 15; 31(18): 5282–5290. doi: 10.1093/nar/gkg733.PMCID: PMC203318 Ten members of the Arabidopsis gene family encoding methyl-CpG-binding domain proteins are transcriptionally active and at least one, AtMBD11, is crucial for normal development Anita Berg, Trine J. Meza, Mirela Mahić, Tage Thorstensen, Kjetil Kristiansen, and Reidunn B. Aalen Nucleic Acids Res. 2003 September 15; 31(18): 5291–5304. doi: 10.1093/nar/gkg735.PMCID: PMC203319 Functional dissection of the C-terminal domain of type II DNA topoisomerase from the kinetoplastid hemoflagellate Leishmania donovani Tanushri Sengupta, Mandira Mukherjee, Chhabinath Mandal, Aditi Das, and Hemanta K. Majumder Nucleic Acids Res. 2003 September 15; 31(18): 5305–5316. doi: 10.1093/nar/gkg727.PMCID: PMC203312 Retrovirus silencer blocking by the cHS4 insulator is CTCF independent Shuyuan Yao, Cameron S. Osborne, Rikki R. Bharadwaj, Peter Pasceri, Tanya Sukonnik, Dylan Pannell, Félix Recillas-Targa, Adam G. West, and James Ellis Nucleic Acids Res. 2003 September 15; 31(18): 5317–5323. doi: 10.1093/nar/gkg742.PMCID: PMC203325 Complete chloroplast DNA sequence of the moss Physcomitrella patens: evidence for the loss and relocation of rpoA from the chloroplast to the nucleus Chika Sugiura, Yuki Kobayashi, Setsuyuki Aoki, Chieko Sugita, and Mamoru Sugita Nucleic Acids Res. 2003 September 15; 31(18): 5324–5331. doi: 10.1093/nar/gkg726.PMCID: PMC203311 Poly(ADP-ribosyl)ation accelerates DNA repair in a pathway dependent on Cockayne syndrome B protein Claudia Flohr, Alexander Bürkle, J. Pablo Radicella, and Bernd Epe Nucleic Acids Res. 2003 September 15; 31(18): 5332–5337. doi: 10.1093/nar/gkg715.PMCID: PMC203308 Patterns of nucleotide substitution, insertion and deletion in the human genome inferred from pseudogenes Zhaolei Zhang and Mark Gerstein Nucleic Acids Res. 2003 September 15; 31(18): 5338–5348. doi: 10.1093/nar/gkg745.PMCID: PMC203328 Revisiting the mouse mitochondrial DNA sequence María Pilar Bayona-Bafaluy, Rebeca Acín-Pérez, James C. Mullikin, Jeong Soon Park, Raquel Moreno-Loshuertos, Peiqing Hu, Acisclo Pérez-Martos, Patricio Fernández-Silva, Yidong Bai, and José Antonio Enríquez Nucleic Acids Res. 2003 September 15; 31(18): 5349–5355. doi: 10.1093/nar/gkg739.PMCID: PMC203322 Identification of Daxx interacting with p73, one of the p53 family, and its regulation of p53 activity by competitive interaction with PML Eun-Joo Kim, Jong-Sup Park, and Soo-Jong Um Nucleic Acids Res. 2003 September 15; 31(18): 5356–5367. doi: 10.1093/nar/gkg741.PMCID: PMC203324 Stability of the Sp3–DNA complex is promoter-specific: Sp3 efficiently competes with Sp1 for binding to promoters containing multiple Sp-sites Bo Yu, Pran K. Datta, and Srilata Bagchi Nucleic Acids Res. 2003 September 15; 31(18): 5368–5376. doi: 10.1093/nar/gkg706.PMCID: PMC203306 Biochemical evidence for Ku-independent backup pathways of NHEJ Huichen Wang, Ange Ronel Perrault, Yoshihiko Takeda, Wei Qin, Hongyan Wang, and George Iliakis Nucleic Acids Res. 2003 September 15; 31(18): 5377–5388. doi: 10.1093/nar/gkg728.PMCID: PMC203313 The Drosophila melanogaster BTB proteins bric à brac bind DNA through a composite DNA binding domain containing a pipsqueak and an AT-Hook motif Corinne Lours, Olivier Bardot, Dorothea Godt, Frank A. Laski, and Jean-Louis Couderc Nucleic Acids Res. 2003 September 15; 31(18): 5389–5398. doi: 10.1093/nar/gkg724.PMCID: PMC203310 Human thymine DNA glycosylase (TDG) and methyl-CpG-binding protein 4 (MBD4) excise thymine glycol (Tg) from a Tg:G mispair Jung-Hoon Yoon, Shigenori Iwai, Timothy R. O’Connor, and Gerd P. Pfeifer Nucleic Acids Res. 2003 September 15; 31(18): 5399–5404. doi: 10.1093/nar/gkg730.PMCID: PMC203315 A tissue-specific knockout reveals that Gata1 is not essential for Sertoli cell function in the mouse Fokke Lindeboom, Nynke Gillemans, Alar Karis, Martine Jaegle, Dies Meijer, Frank Grosveld, and Sjaak Philipsen Nucleic Acids Res. 2003 September 15; 31(18): 5405–5412. doi: 10.1093/nar/gkg723.PMCID: PMC203309 Identification and characterization of a novel cross-link lesion in d(CpC) upon 365-nm irradiation in the presence of 2-methyl-1,4-naphthoquinone Zhenjiu Liu, Yuan Gao, and Yinsheng Wang Nucleic Acids Res. 2003 September 15; 31(18): 5413–5424. doi: 10.1093/nar/gkg736.PMCID: PMC203320 DNA condensation by the nucleocapsid protein of HIV-1: a mechanism ensuring DNA protection G. Krishnamoorthy, Bernard Roques, Jean-Luc Darlix, and Yves Mély Nucleic Acids Res. 2003 September 15; 31(18): 5425–5432. doi: 10.1093/nar/gkg738.PMCID: PMC203321 Patterns in interspecies similarity correlate with nucleotide composition in mammalian 3′UTRs Svetlana A. Shabalina, Aleksey Y. Ogurtsov, David J. Lipman, and Alexey S. Kondrashov Nucleic Acids Res. 2003 September 15; 31(18): 5433–5439. doi: 10.1093/nar/gkg751.PMCID: PMC203331 Crystal structure of MboIIA methyltransferase Jerzy Osipiuk, Martin A. Walsh, and Andrzej Joachimiak Nucleic Acids Res. 2003 September 15; 31(18): 5440–5448. doi: 10.1093/nar/gkg713.PMCID: PMC203307 Crystal structure of a wild-type Cre recombinase–loxP synapse reveals a novel spacer conformation suggesting an alternative mechanism for DNA cleavage activation Eric Ennifar, Joachim E. W. Meyer, Frank Buchholz, A. Francis Stewart, and Dietrich Suck Nucleic Acids Res. 2003 September 15; 31(18): 5449–5460. doi: 10.1093/nar/gkg732.PMCID: PMC203317 NAR Methods Online Rapid generation of gene disruption constructs by in vitro transposition and identification of a Dictyostelium protein kinase that regulates its rate of growth and development Tomoaki Abe, Judith Langenick, and Jeffrey G. Williams Nucleic Acids Res. 2003 September 15; 31(18): e107. doi: 10.1093/nar/gng095.PMCID: PMC203333 Studies of temperature-dependent electronic transduction on DNA hairpin loop sensor Youdong Mao, Chunxiong Luo, and Qi Ouyang Nucleic Acids Res. 2003 September 15; 31(18): e108. doi: 10.1093/nar/gng108.PMCID: PMC203334 Optimizing spotting solutions for increased reproducibility of cDNA microarrays David S. Rickman, Christopher J. Herbert, and Lawrence P. Aggerbeck Nucleic Acids Res. 2003 September 15; 31(18): e109. doi: 10.1093/nar/gng109.PMCID: PMC203335 An improved method for the in vitro evolution of aptamers and applications in protein detection and purification Michael B. Murphy, Shirin T. Fuller, Paul M. Richardson, and Sharon A. Doyle Nucleic Acids Res. 2003 September 15; 31(18): e110. doi: 10.1093/nar/gng110.PMCID: PMC203336 A real-time DNase assay (ReDA) based on PicoGreen® fluorescence Gökhan Tolun and Richard S. Myers Nucleic Acids Res. 2003 September 15; 31(18): e111. doi: 10.1093/nar/gng111.PMCID: PMC203337 Conversion of sub-megasized DNA to desired structures using a novel Bacillus subtilis genome vector Shinya Kaneko, Kenji Tsuge, Takashi Takeuchi, and Mitsuhiro Itaya Nucleic Acids Res. 2003 September 15; 31(18): e112. doi: 10.1093/nar/gng114.PMCID: PMC203338 Identification of a novel proliferation-inducing determinant using lentiviral expression cloning Dmitri Chilov, Cornelia Fux, Hana Joch, and Martin Fussenegger Nucleic Acids Res. 2003 September 15; 31(18): e113. doi: 10.1093/nar/gng115.PMCID: PMC203339 Ligation mediated PCR performed at low denaturation temperatures—PCR melting profiles Aleksander Masny and Andrzej Płucienniczak Nucleic Acids Res. 2003 September 15; 31(18): e114. doi: 10.1093/nar/gng116.PMCID: PMC203340 Corrigendum Nucleic Acids Res. 2003 September 15; 31(18): 5461. doi: 10.1093/nar/gkg772.PMCID: PMC203332 Corrects: Shamol Saha, et al. RNA sequences that work as transcriptional activating regions. Nucleic Acids Res. 2003 March 1; 31(5): 1565–1570. |