| | Articles SURVEY AND SUMMARY: Downstream elements of mammalian pre-mRNA polyadenylation signals: primary, secondary and higher-order structures Margarita I. Zarudnaya, Iryna M. Kolomiets, Andriy L. Potyahaylo, and Dmytro M. Hovorun PMCID: PMC149834 De novo cytosine methylation in the differentiating macronucleus of the stichotrichous ciliate Stylonychia lemnae Stefan Juranek, Hans-Joachim Wieden, and Hans J. Lipps PMCID: PMC149826 The crystal structure of an alternating RNA heptamer r(GUAUACA) forming a six base-paired duplex with 3′-end adenine overhangs Ke Shi, Baocheng Pan, and Muttaiya Sundaralingam PMCID: PMC149819 Imprinting regulation of the murine Meg1/Grb10 and human GRB10 genes; roles of brain-specific promoters and mouse-specific CTCF-binding sites Takafusa Hikichi, Takashi Kohda, Tomoko Kaneko-Ishino, and Fumitoshi Ishino PMCID: PMC149825 Efficient cloning and engineering of entire mitochondrial genomes in Escherichia coli and transfer into transcriptionally active mitochondria Young Geol Yoon and Michael D. Koob PMCID: PMC149821 Highly efficient catalytic RNA cleavage by the cooperative action of two Cu(II) complexes embodied within an antisense oligonucleotide Satoshi Sakamoto, Takashi Tamura, Takako Furukawa, Yasuo Komatsu, Eiko Ohtsuka, Masaya Kitamura, and Hideo Inoue PMCID: PMC149831 Identification of the ATP-binding site in the terminase subunit pUL56 of human cytomegalovirus Brigitte Scholz, Sabine Rechter, John C. Drach, Leroy B. Townsend, and Elke Bogner PMCID: PMC149822 Base pair opening within B-DNA: free energy pathways for GC and AT pairs from umbrella sampling simulations Emmanuel Giudice, Péter Várnai, and Richard Lavery PMCID: PMC149832 The structure of full-length LysR-type transcriptional regulators. Modeling of the full-length OxyR transcription factor dimer Jolanta Zaim and Andrzej M. Kierzek PMCID: PMC149827 Mapping the triphosphatase active site of baculovirus mRNA capping enzyme LEF4 and evidence for a two-metal mechanism Alexandra Martins and Stewart Shuman PMCID: PMC149837 The crystal structure of the complex between a disaccharide anthracycline and the DNA hexamer d(CGATCG) reveals two different binding sites involving two DNA duplexes Claudia Temperini, Luigi Messori, Pierluigi Orioli, Cristina Di Bugno, Fabio Animati, and Giovanni Ughetto PMCID: PMC149838 The highly related DEAD box RNA helicases p68 and p72 exist as heterodimers in cells V. C. Ogilvie, B. J. Wilson, S. M. Nicol, N. A. Morrice, L. R. Saunders, G. N. Barber, and F. V. Fuller-Pace PMCID: PMC149829 The ribonuclease H activity of the reverse transcriptases of human immunodeficiency viruses type 1 and type 2 is modulated by residue 294 of the small subunit Z. Sevilya, S. Loya, N. Adir, and A. Hizi PMCID: PMC149828 Putative intermediary stages for the molecular evolution from a ribozyme to a catalytic RNP Yoshiya Ikawa, Kentaro Tsuda, Shigeyoshi Matsumura, Shota Atsumi, and Tan Inoue PMCID: PMC149818 Comparing the fine specificity of DNA binding by NF-κB p50 and p52 using principal coordinates analysis Anastasia Nijnik, Richard Mott, Dominic P. Kwiatkowski, and Irina A. Udalova PMCID: PMC149824 Identification of the SRC pyrimidine-binding protein (SPy) as hnRNP K: implications in the regulation of SRC1A transcription Shawn A. Ritchie, Mohammed K. Pasha, Danielle J. P. Batten, Rajendra K. Sharma, Douglas J. H. Olson, Andrew R. S. Ross, and Keith Bonham PMCID: PMC149839 Sequence-specific minor groove binding by bis-benzimidazoles: water molecules in ligand recognition Christian Bailly, Gianni Chessari, Carolina Carrasco, Alexandra Joubert, John Mann, W. David Wilson, and Stephen Neidle PMCID: PMC149830 Protein concerted motions in the DNA–human topoisomerase I complex Giovanni Chillemi, Paola Fiorani, Piero Benedetti, and Alessandro Desideri PMCID: PMC149835 The role of minor groove functional groups in DNA hydration Kristen Kruger Woods, Tao Lan, Larry W. McLaughlin, and Loren Dean Williams PMCID: PMC149833 Adjacent DNA sequences modulate Sox9 transcriptional activation at paired Sox sites in three chondrocyte-specific enhancer elements Laura C. Bridgewater, Marlan D. Walker, Gwen C. Miller, Trevor A. Ellison, L. Daniel Holsinger, Jennifer L. Potter, Todd L. Jackson, Reuben K. Chen, Vicki L. Winkel, Zhaoping Zhang, Sandra McKinney, and Benoit de Crombrugghe PMCID: PMC149823 Analysis of helicase activity and substrate specificity of Drosophila RECQ5 A. Zeynep Özsoy, Heather M. Ragonese, and Steven W. Matson PMCID: PMC149836 RNA sequences that work as transcriptional activating regions Shamol Saha, Aseem Z. Ansari, Kevin A. Jarell, and Mark Ptashne PMCID: PMC149820 Transcriptional activation by AP-2α is modulated by the oncogene DEK Mónica Campillos, Miguel Angel García, Fernando Valdivieso, and Jesús Vázquez PMCID: PMC149840 Ageing and telomeres: a study into organ- and gender-specific telomere shortening H. Cherif, J. L. Tarry, S. E. Ozanne, and C. N. Hales PMCID: PMC149817 NAR Methods Online SNPs by AFLP (SBA): a rapid SNP isolation strategy for non-model organisms Jean-Claude Nicod and Carlo R. Largiadèr PMCID: PMC149841 Fluorescent labelling of cRNA for microarray applications Peter A. C. ’t Hoen, Floor de Kort, G. J. B. van Ommen, and Johan T. den Dunnen PMCID: PMC149842 Cre-mediated germline mosaicism: a new transgenic mouse for the selective removal of residual markers from tri-lox conditional alleles Patricia Leneuve, Sabine Colnot, Ghislaine Hamard, Fiona Francis, Michiko Niwa-Kawakita, Marco Giovannini, and Martin Holzenberger PMCID: PMC149843 New restriction enzymes discovered from Escherichia coli clinical strains using a plasmid transformation method Julie K. A. Kasarjian, Masatake Iida, and Junichi Ryu PMCID: PMC149844 De novo production of diverse intracellular antibody libraries Tomoyuki Tanaka, Grace T. Y. Chung, Alan Forster, M. Natividad Lobato, and Terence H. Rabbitts PMCID: PMC149845 |
