| | Research Articles The ups and downs of nucleic acid duplex stability: structure-stability studies on chemically-modified DNA:RNA duplexes. S M Freier and K H Altmann PMCID: PMC147101 BplI, a new BcgI-like restriction endonuclease, which recognizes a symmetric sequence. J Vitkute, Z Maneliene, M Petrusyte, and A Janulaitis PMCID: PMC147065 Oligonucleotide dendrimers: synthesis and use as polylabelled DNA probes. M S Shchepinov, I A Udalova, A J Bridgman, and E M Southern PMCID: PMC147080 The ETS family member ERM contains an alpha-helical acidic activation domain that contacts TAFII60. P A Defossez, J L Baert, M Monnot, and Y de Launoit PMCID: PMC147095 Functional recognition of fragmented operator sites by R17/MS2 coat protein, a translational repressor. D E Fouts, H L True, and D W Celander PMCID: PMC147100 The motif V of plum pox potyvirus CI RNA helicase is involved in NTP hydrolysis and is essential for virus RNA replication. A Fernández, H S Guo, P Sáenz, L Simón-Buela, M Gómez de Cedrón, and J A García PMCID: PMC147072 TAR RNA decoys inhibit tat-activated HIV-1 transcription after preinitiation complex formation. P R Bohjanen, Y Liu, and M A Garcia-Blanco PMCID: PMC147068 Binding of Hoechst 33258 to the TAR RNA of HIV-1. Recognition of a pyrimidine bulge-dependent structure. L Dassonneville, F Hamy, P Colson, C Houssier, and C Bailly PMCID: PMC147084 The yeast gene YNL292w encodes a pseudouridine synthase (Pus4) catalyzing the formation of psi55 in both mitochondrial and cytoplasmic tRNAs. H F Becker, Y Motorin, R J Planta, and H Grosjean PMCID: PMC147073 New dye-labeled terminators for improved DNA sequencing patterns. B B Rosenblum, L G Lee, S L Spurgeon, S H Khan, S M Menchen, C R Heiner, and S M Chen PMCID: PMC147091 Replication initiation and elongation fork rates within a differentially expressed human multicopy locus in early S phase. R S Scott, K Y Truong, and J M Vos PMCID: PMC147096 Characterization of multiple alternative RNAs resulting from antisense transcription of the PR264/SC35 splicing factor gene. A Sureau, J Soret, C Guyon, C Gaillard, S Dumon, M Keller, P Crisanti, and B Perbal PMCID: PMC147067 NMR determination of the conformational and drug binding properties of the DNA heptamer d(GpCpGpApApGpC) in aqueous solution. D B Davies, V I Pahomov, and A N Veselkov PMCID: PMC147085 Higher fidelity of RNA-dependent DNA mispair extension by M184V drug-resistant than wild-type reverse transcriptase of human immunodeficiency virus type 1. M Hsu, P Inouye, L Rezende, N Richard, Z Li, V R Prasad, and M A Wainberg PMCID: PMC147088 High affinity binding of MEF-2C correlates with DNA bending. D Meierhans, M Sieber, and R K Allemann PMCID: PMC147066 The RNA moiety of chick embryo 5-methylcytosine- DNA glycosylase targets DNA demethylation. J P Jost, M Frémont, M Siegmann, and J Hofsteenge PMCID: PMC147099 Structural studies on tRNA acceptor stem microhelices: exchange of the discriminator base A73 for G in human tRNALeu switches the acceptor specificity from leucine to serine possibly by decreasing the stability of the terminal G1-C72 base pair. A U Metzger, M Heckl, D Willbold, K Breitschopf, U L RajBhandary, P Rösch, and H J Gross PMCID: PMC147070 The yeast 8-oxoguanine DNA glycosylase (Ogg1) contains a DNA deoxyribophosphodiesterase (dRpase) activity. M Sandigursky, A Yacoub, M R Kelley, Y Xu, W A Franklin, and W A Deutsch PMCID: PMC147074 Placement of the alpha-sarcin loop within the 50S subunit: evidence derived using a photolabile oligodeoxynucleotide probe. P Muralikrishna, R W Alexander, and B S Cooperman PMCID: PMC147071 RAGA: RNA sequence alignment by genetic algorithm. C Notredame, E A O'Brien, and D G Higgins PMCID: PMC147093 2'-Fluoro modified nucleic acids: polymerase-directed synthesis, properties and stability to analysis by matrix-assisted laser desorption/ionization mass spectrometry. T Ono, M Scalf, and L M Smith PMCID: PMC147098 Solution structure of RNA duplexes containing alternating CG base pairs: NMR study of r(CGCGCG)2 and 2'-O-Me(CGCGCG)2 under low salt conditions. M Popenda, E Biala, J Milecki, and R W Adamiak PMCID: PMC147063 Crystal structure of 2'-O-Me(CGCGCG)2, an RNA duplex at 1.30 A resolution. Hydration pattern of 2'-O-methylated RNA. D A Adamiak, J Milecki, M Popenda, R W Adamiak, Z Dauter, and W R Rypniewski PMCID: PMC147083 Opening of the extraordinarily stable mini-hairpin d(GCGAAGC). B Jollès, M Réfrégiers, and A Laigle PMCID: PMC147075 Deoxyribonucleotide-containing RNAs: a novel class of templates for HIV-1 reverse transcriptase. S O Gudima, E G Kazantseva, D A Kostyuk, I L Shchaveleva, O I Grishchenko, L V Memelova, and S N Kochetkov PMCID: PMC147092 Analysis of the yeast genome: identification of new non-coding and small ORF-containing RNAs. W M Olivas, D Muhlrad, and R Parker PMCID: PMC147069 Statistical modeling and analysis of the LAGLIDADG family of site-specific endonucleases and identification of an intein that encodes a site-specific endonuclease of the HNH family. J Z Dalgaard, A J Klar, M J Moser, W R Holley, A Chatterjee, and I S Mian PMCID: PMC147097 Increased DNA binding and sequence discrimination of PNA oligomers containing 2,6-diaminopurine. G Haaima, H F Hansen, L Christensen, O Dahl, and P E Nielsen PMCID: PMC147079 Relative stability of triplexes containing different numbers of T.AT and C+.GC triplets. M D Keppler and K R Fox PMCID: PMC147077 Non-homologous DNA end joining in plant cells is associated with deletions and filler DNA insertions. V Gorbunova and A A Levy PMCID: PMC147090 Both the polypyrimidine tract and the 3' splice site function prior to the first step of splicing in fission yeast. C M Romfo and J A Wise PMCID: PMC147086 Baculovirus-mediated expression and characterization of the full-length murine DNA methyltransferase. S Pradhan, D Talbot, M Sha, J Benner, L Hornstra, E Li, R Jaenisch, and R J Roberts PMCID: PMC147102 Peptide nucleic acid-anthraquinone conjugates: strand invasion and photoinduced cleavage of duplex DNA. B Armitage, T Koch, H Frydenlund, H Orum, H G Batz, and G B Schuster PMCID: PMC147076 RnaViz, a program for the visualisation of RNA secondary structure. P De Rijk and R De Wachter PMCID: PMC147081 Exploiting unassigned codons in Micrococcus luteus for tRNA-based amino acid mutagenesis. A K Kowal and J S Oliver PMCID: PMC147087 Construction of a semisynthetic antibody library using trinucleotide oligos. M Braunagel and M Little PMCID: PMC147064 Universal and rapid salt-extraction of high quality genomic DNA for PCR-based techniques. S M Aljanabi and I Martinez PMCID: PMC147078 Adaptor-tagged competitive PCR: a novel method for measuring relative gene expression. K Kato PMCID: PMC147082 Monitoring the amplification of CATCH, a 3SR based cooperatively coupled isothermal amplification system, by fluorimetric methods. R Ehricht, T Kirner, T Ellinger, P Foerster, and J S McCaskill PMCID: PMC147089 Isolation of nuclei for chromatin analysis in fission yeast. J A Mason and J Mellor PMCID: PMC147094 |
