| | Call for Papers Nucleic Acids Res. 2002 December 1; 30(23): 5015. PMCID: PMC137982 Articles The 3′ untranslated region of human vimentin mRNA interacts with protein complexes containing eEF-1γ and HAX-1 May Al-Maghrebi, Hervé Brulé, Marina Padkina, Carrie Allen, W. Michael Holmes, and Zendra E. Zehner PMCID: PMC137969 The Caudal homeodomain protein activates Drosophila E2F gene expression Mi-Sun Hwang, Young-Shin Kim, Na-Hyun Choi, Jae-Hong Park, Eun-Jin Oh, Eun-Jeong Kwon, Masamitsu Yamaguchi, and Mi-Ae Yoo PMCID: PMC137955 Analysis of histone acetyltransferase and histone deacetylase families of Arabidopsis thaliana suggests functional diversification of chromatin modification among multicellular eukaryotes Ritu Pandey, Andreas Müller, Carolyn A. Napoli, David A. Selinger, Craig S. Pikaard, Eric J. Richards, Judith Bender, David W. Mount, and Richard A. Jorgensen PMCID: PMC137973 Bacillus subtilis τ subunit of DNA polymerase III interacts with bacteriophage SPP1 replicative DNA helicase G40P María I. Martínez-Jiménez, Pablo Mesa, and Juan C. Alonso PMCID: PMC137964 Elucidation of structure–function relationships in the protein subunit of bacterial RNase P using a genetic complementation approach Milan Jovanovic, Ruth Sanchez, Sidney Altman, and Venkat Gopalan PMCID: PMC137979 Localisation of the human hSuv3p helicase in the mitochondrial matrix and its preferential unwinding of dsDNA Michal Minczuk, Jan Piwowarski, Monika A. Papworth, Karen Awiszus, Sarah Schalinski, Andrzej Dziembowski, Aleksandra Dmochowska, Ewa Bartnik, Kostas Tokatlidis, Piotr P. Stepien, and Peter Borowski PMCID: PMC137961 Human topoisomerase I cleavage complexes are repaired by a p53-stimulated recombination-like reaction in vitro Holger Stephan, Frank Grosse, and Kent Søe PMCID: PMC137972 Characterization of the frameshift stimulatory signal controlling a programmed –1 ribosomal frameshift in the human immunodeficiency virus type 1 Dominic Dulude, Martin Baril, and Léa Brakier-Gingras PMCID: PMC137970 Circle ligation of in vitro assembled chromatin indicates a highly flexible structure A. Stein, Y. Dalal, and T. J. Fleury PMCID: PMC137980 An upstream open reading frame impedes translation of the huntingtin gene Joseph Lee, Eun Hee Park, Graeme Couture, Isabelle Harvey, Philippe Garneau, and Jerry Pelletier PMCID: PMC137975 A single amino acid substitution in DNA-PKcs explains the novel phenotype of the CHO mutant, XR-C2 Timothy Woods, Wei Wang, Erin Convery, Abdellatif Errami, Malgorzata Z. Zdzienicka, and Katheryn Meek PMCID: PMC137947 Difference between deoxyribose- and tetrahydrofuran-type abasic sites in the in vivo mutagenic responses in yeast Chie Otsuka, Sachi Sanadai, Yasuhiro Hata, Hisanori Okuto, Vladimir N. Noskov, David Loakes, and Kazuo Negishi PMCID: PMC137977 The vertebrate protein CTCF functions as an insulator in Saccharomyces cerevisiae Pierre-Antoine Defossez and Eric Gilson PMCID: PMC137948 Sequence-dependent folding of DNA three-way junctions René Assenberg, Anthony Weston, Don L. N. Cardy, and Keith R. Fox PMCID: PMC137952 Outersphere and innersphere coordinated metal ions in an aminoacyl-tRNA synthetase ribozyme Hirohide Saito and Hiroaki Suga PMCID: PMC137956 Antisense inhibition of gene expression in cells by oligonucleotides incorporating locked nucleic acids: effect of mRNA target sequence and chimera design Dwaine A. Braasch, Yinghui Liu, and David R. Corey PMCID: PMC137965 Hybridization of 2′-O-methyl and 2′-deoxy molecular beacons to RNA and DNA targets Andrew Tsourkas, Mark A. Behlke, and Gang Bao PMCID: PMC137950 Intron gain and loss in the evolution of the conserved eukaryotic recombination machinery Frank Hartung, Frank R. Blattner, and Holger Puchta PMCID: PMC137963 Methylation of Xenopus CIRP2 regulates its arginine- and glycine-rich region-mediated nucleocytoplasmic distribution Kazuma Aoki, Yasuhiro Ishii, Ken Matsumoto, and Masafumi Tsujimoto PMCID: PMC137953 Regulation of site-specific recombination by the C-terminus of λ integrase Robert A. Kazmierczak, Brian M. Swalla, Alex B. Burgin, Richard I. Gumport, and Jeffrey F. Gardner PMCID: PMC137966 Functional domains involved in the interaction between Orc1 and transcriptional repressor AlF-C that bind to an origin/promoter of the rat aldolase B gene Yasushi Saitoh, Satoru Miyagi, Hiroyoshi Ariga, and Ken-ichi Tsutsumi PMCID: PMC137957 HapScope: a software system for automated and visual analysis of functionally annotated haplotypes Jinghui Zhang, William L. Rowe, Jeffery P. Struewing, and Kenneth H. Buetow PMCID: PMC137968 Rearrangement of a 1,3-trans-{Pt(NH3)2[(GXG)-N7G,N7G]} intrastrand cross-link into interstrand cross-links within RNA duplexes Marine Escaffre, Jean-Claude Chottard, and Sophie Bombard PMCID: PMC137981 Detection of novel members, structure–function analysis and evolutionary classification of the 2H phosphoesterase superfamily Raja Mazumder, Lakshminarayan M. Iyer, Sona Vasudevan, and L. Aravind PMCID: PMC137960 A Hoogsteen base pair embedded in undistorted B-DNA Jun Aishima, Rossitza K. Gitti, Joyce E. Noah, Hin Hark Gan, Tamar Schlick, and Cynthia Wolberger PMCID: PMC137974 Crystal structure of d(GCGAAAGCT) containing a parallel-stranded duplex with homo base pairs and an anti-parallel duplex with Watson–Crick base pairs Tomoko Sunami, Jiro Kondo, Tomonori Kobuna, Ichiro Hirao, Kimitsuna Watanabe, Kin-ichiro Miura, and Akio Takénaka PMCID: PMC137954 Skip interacts with the retinoblastoma tumor suppressor and inhibits its transcriptional repression activity Tulasiram Prathapam, Christian Kühne, and Lawrence Banks PMCID: PMC137971 Substitution of an essential adenine in the U1A–RNA complex with a non-polar isostere Jacob B. Tuite, Jerome C. Shiels, and Anne M. Baranger PMCID: PMC137951 G-quartets assembly within a G-rich DNA flap. A possible event at the center of the HIV-1 genome Sébastien Lyonnais, Candide Hounsou, Marie-Paule Teulade-Fichou, Josette Jeusset, Eric Le Cam, and Gilles Mirambeau PMCID: PMC137959 Translesion replication of benzo[a]pyrene and benzo[c]phenanthrene diol epoxide adducts of deoxyadenosine and deoxyguanosine by human DNA polymerase ι Ekaterina G. Frank, Jane M. Sayer, Heiko Kroth, Eiji Ohashi, Haruo Ohmori, Donald M. Jerina, and Roger Woodgate PMCID: PMC137958 The complete genomic sequence of Mycoplasma penetrans, an intracellular bacterial pathogen in humans Yuko Sasaki, Jun Ishikawa, Atsushi Yamashita, Kenshiro Oshima, Tsuyoshi Kenri, Keiko Furuya, Chie Yoshino, Atsuko Horino, Tadayoshi Shiba, Tsuguo Sasaki, and Masahira Hattori PMCID: PMC137978 PSKH1, a novel splice factor compartment-associated serine kinase Gaute Brede, Jorun Solheim, and Hans Prydz PMCID: PMC137962 Discovery of RNA structural elements using evolutionary computation Gary B. Fogel, V. William Porto, Dana G. Weekes, David B. Fogel, Richard H. Griffey, John A. McNeil, Elena Lesnik, David J. Ecker, and Rangarajan Sampath PMCID: PMC137967 Proteomic analysis of human metaphase chromosomes reveals topoisomerase II alpha as an Aurora B substrate Ciaran Morrison, Alexander J. Henzing, Ole Nørregaard Jensen, Neil Osheroff, Helen Dodson, Stefanie E. Kandels-Lewis, Richard R. Adams, and William C. Earnshaw PMCID: PMC137976 Probing triplex formation by EPR spectroscopy using a newly synthesized spin label for oligonucleotides Peter M. Gannett, Eva Darian, Jeannine Powell, Edward M. Johnson, II, Claudius Mundoma, Nancy L. Greenbaum, Chris M. Ramsey, Naresh S. Dalal, and David E. Budil PMCID: PMC137949 NAR Methods Online Monitoring mis-acylated tRNA suppression efficiency in mammalian cells via EGFP fluorescence recovery Erwin Ilegems, Horst M. Pick, and Horst Vogel PMCID: PMC137983 Sequence tagged microsatellite profiling (STMP): improved isolation of DNA sequence flanking target SSRs M. J. Hayden, G. Good, and P. J. Sharp PMCID: PMC137984 Polyamine-assisted rapid and clean cleavage of oligonucleotides from cis-diol bearing universal support P. Kumar, G. Dhawan, R. Chandra, and K. C. Gupta PMCID: PMC137985 Predicting the success of primer extension genotyping assays using statistical modeling Anton Yuryev, JianPing Huang, Mark Pohl, Robert Patch, Felicia Watson, Peter Bell, Miriam Donaldson, Michael S. Phillips, and Michael T. Boyce-Jacino PMCID: PMC137986 Construction and selection of bead-bound combinatorial oligonucleoside phosphorothioate and phosphorodithioate aptamer libraries designed for rapid PCR-based sequencing Xianbin Yang, Suzanne E. Bassett, Xin Li, Bruce A. Luxon, Norbert K. Herzog, Robert E. Shope, Judy Aronson, Tarl W. Prow, James F. Leary, Romy Kirby, Andrew D. Ellington, and David G. Gorenstein PMCID: PMC137987 Quantitative codon optimisation of DNA libraries encoding sub-random peptides: design and characterisation of a novel library encoding transmembrane domain peptides Ola Larsson, Dorit Thormeyer, Arian Asinger, Björn Wihlén, Claes Wahlestedt, and Zicai Liang PMCID: PMC137988 Stringent doxycycline dependent control of CRE recombinase in vivo Kai Schönig, Frieder Schwenk, Klaus Rajewsky, and Hermann Bujard PMCID: PMC137989 Detection of pseudouridine and other modifications in tRNA by cyanoethylation and MALDI mass spectrometry Jonas Mengel-Jørgensen and Finn Kirpekar PMCID: PMC137990 |
