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Volume 28(12);  June 15, 2000
Articles
Analysis of uracil-DNA glycosylases from the murine Ung gene reveals differential expression in tissues and in embryonic development and a subcellular sorting pattern that differs from the human homologues
Hilde Nilsen, Kristin Solum Steinsbekk, Marit Otterlei, Geir Slupphaug, Per Arne Aas, and Hans E. Krokan
Nucleic Acids Res. 2000 June 15; 28(12): 2277–2285.
PMCID: PMC102736
An aryl hydrocarbon receptor conformation acts as the functional core of nuclear dioxin signaling
Sven Kronenberg, Charlotte Esser, and Carsten Carlberg
Nucleic Acids Res. 2000 June 15; 28(12): 2286–2291.
PMCID: PMC102727
Saccharomyces cerevisiae RAP1 binds to telomeric sequences with spatial flexibility
Johan Wahlin and Marita Cohn
Nucleic Acids Res. 2000 June 15; 28(12): 2292–2301.
PMCID: PMC102728
The cellular mismatch repair system is able to repair mismatches within MLV retroviral double-stranded DNA at a low frequency
Ling-Yun Tang and Jiayou Zhang
Nucleic Acids Res. 2000 June 15; 28(12): 2302–2306.
PMCID: PMC102723
The role of polyamines, Na+ and K+ in the formation of triple helices between purine oligonucleotides and the promoter region of the human c-src proto-oncogene
Palok Aich, T. J. Thomas, and Jeremy S. Lee
Nucleic Acids Res. 2000 June 15; 28(12): 2307–2310.
PMCID: PMC102722
Comparison of whole genome sequences of Chlamydia pneumoniae J138 from Japan and CWL029 from USA
Mutsunori Shirai, Hideki Hirakawa, Mitsuaki Kimoto, Mitsuaki Tabuchi, Fumio Kishi, Kazunobu Ouchi, Tadayoshi Shiba, Kazuo Ishii, Masahira Hattori, Satoru Kuhara, and Teruko Nakazawa
Nucleic Acids Res. 2000 June 15; 28(12): 2311–2314.
PMCID: PMC102726
Dbp10p, a putative RNA helicase from Saccharomyces cerevisiae, is required for ribosome biogenesis
Fabienne Burger, Marie-Claire Daugeron, and Patrick Linder
Nucleic Acids Res. 2000 June 15; 28(12): 2315–2323.
PMCID: PMC102738
Characterisation of the catalytically active form of RecG helicase
Peter McGlynn, Akeel A. Mahdi, and Robert G. Lloyd
Nucleic Acids Res. 2000 June 15; 28(12): 2324–2332.
PMCID: PMC102718
A unique ISRE, in the TATA-less human Isg20 promoter, confers IRF-1-mediated responsiveness to both interferon type I and type II
Celine Gongora, Genevieve Degols, Lucile Espert, The Duc Hua, and Nadir Mechti
Nucleic Acids Res. 2000 June 15; 28(12): 2333–2341.
PMCID: PMC102735
Evolutionary appearance of genes encoding proteins associated with box H/ACA snoRNAs: Cbf5p in Euglena gracilis, an early diverging eukaryote, and candidate Gar1p and Nop10p homologs in archaebacteria
Yoh-ichi Watanabe and Michael W. Gray
Nucleic Acids Res. 2000 June 15; 28(12): 2342–2352.
PMCID: PMC102724
Bacterial cryptochrome and photolyase: characterization of two photolyase-like genes of Synechocystis sp. PCC6803
Kenichi Hitomi, Kazuhisa Okamoto, Hiromi Daiyasu, Hiroshi Miyashita, Shigenori Iwai, Hiroyuki Toh, Masahiro Ishiura, and Takeshi Todo
Nucleic Acids Res. 2000 June 15; 28(12): 2353–2362.
PMCID: PMC102721
Functional mapping of the MH1 DNA-binding domain of DPC4/SMAD4
Jessa B. Jones and Scott E. Kern
Nucleic Acids Res. 2000 June 15; 28(12): 2363–2368.
PMCID: PMC102729
Regulation of the RNA-dependent protein kinase by triple helix formation
Momchilo Vuyisich and Peter A. Beal
Nucleic Acids Res. 2000 June 15; 28(12): 2369–2374.
PMCID: PMC102732
A gender-specific mRNA encoding a cytotoxic ribonuclease contains a 3′ UTR of unusual length and structure
Shin-lin Chen, Shu-Yun Le, Dianne L. Newton, Jacob V. Maizel Jr, and Susanna M. Rybak
Nucleic Acids Res. 2000 June 15; 28(12): 2375–2382.
PMCID: PMC102719
4-Aminopyrazolo[3,4-d]pyrimidine (4-APP) as a novel inhibitor of the RNA and DNA depurination induced by Shiga toxin 1
Maurizio Brigotti, Domenica Carnicelli, Paola Accorsi, Simona Rizzi, Lucio Montanaro, and Simonetta Sperti
Nucleic Acids Res. 2000 June 15; 28(12): 2383–2388.
PMCID: PMC102733
DNA-binding sequence of the human prostate-specific homeodomain protein NKX3.1
David J. Steadman, Domenica Giuffrida, and Edward P. Gelmann
Nucleic Acids Res. 2000 June 15; 28(12): 2389–2395.
PMCID: PMC102730
Characterization of the human and mouse WRN 3′→5′ exonuclease
Shurong Huang, Sergey Beresten, Baomin Li, Junko Oshima, Nathan A. Ellis, and Judith Campisi
Nucleic Acids Res. 2000 June 15; 28(12): 2396–2405.
PMCID: PMC102739
Identification of the C-terminal activation domain of the NeuroD-related factor (NDRF)
Yoshiyuki Konishi, Tsutomu Aoki, Noriaki Ohkawa, Toru Matsu-ura, Katsuhiko Mikoshiba, and Taka-aki Tamura
Nucleic Acids Res. 2000 June 15; 28(12): 2406–2412.
PMCID: PMC102734
Fine organization of Bombyx mori fibroin heavy chain gene
Cong-Zhao Zhou, Fabrice Confalonieri, Nadine Medina, Yvan Zivanovic, Catherine Esnault, Tie Yang, Michel Jacquet, Joel Janin, Michel Duguet, Roland Perasso, and Zhen-Gang Li
Nucleic Acids Res. 2000 June 15; 28(12): 2413–2419.
PMCID: PMC102737
Potent inhibition of Werner and Bloom helicases by DNA minor groove binding drugs
Robert M. Brosh Jr, Julia K. Karow, E. James White, Natalie D. Shaw, Ian D. Hickson, and Vilhelm A. Bohr
Nucleic Acids Res. 2000 June 15; 28(12): 2420–2430.
PMCID: PMC102731
The global intrinsic curvature of archaeal and eubacterial genomes is mostly contained in their dinucleotide composition and is probably not an adaptation
Enrique Merino and Alejandro Garciarrubio
Nucleic Acids Res. 2000 June 15; 28(12): 2431–2438.
PMCID: PMC102725
Influence of divalent cations on the conformation of phosphorothioate oligodeoxynucleotides: a circular dichroism study
Siddhesh D. Patil and David G. Rhodes
Nucleic Acids Res. 2000 June 15; 28(12): 2439–2445.
PMCID: PMC102740
Zhangfei: a second cellular protein interacts with herpes simplex virus accessory factor HCF in a manner similar to Luman and VP16
Rui Lu and Vikram Misra
Nucleic Acids Res. 2000 June 15; 28(12): 2446–2454.
PMCID: PMC102720
NAR Methods Online
Quantitation of supercoiled circular content in plasmid DNA solutions using a fluorescence-based method
M. S. Levy, P. Lotfian, R. O’Kennedy, M. Y. Lo-Yim, and P. Ayazi Shamlou
Nucleic Acids Res. 2000 June 15; 28(12): e57.
PMCID: PMC102742
PCR-generated padlock probes detect single nucleotide variation in genomic DNA
D.-O. Antson, A. Isaksson, U. Landegren, and M. Nilsson
Nucleic Acids Res. 2000 June 15; 28(12): e58.
PMCID: PMC102743
Real-time monitoring of in vitro transcriptional RNA synthesis using fluorescence resonance energy transfer
Yukari Sei-Iida, Hiroyuki Koshimoto, Satoshi Kondo, and Akihiko Tsuji
Nucleic Acids Res. 2000 June 15; 28(12): e59.
PMCID: PMC102744
A miniature integrated device for automated multistep genetic assays
Rolfe C. Anderson, Xing Su, Gregory J. Bogdan, and Jeffery Fenton
Nucleic Acids Res. 2000 June 15; 28(12): e60.
PMCID: PMC102745
Rapid purification of protein complexes from mammalian cells
Dan Medina, Neal Moskowitz, Subarna Khan, Scott Christopher, and Joseph Germino
Nucleic Acids Res. 2000 June 15; 28(12): e61.
PMCID: PMC102746
Improved NlaIII digestion of PAGE-purified 102 bp ditags by addition of a single purification step in both the SAGE and microSAGE protocols
James M. Angelastro, Lars P. Klimaschewski, and Ottavio V. Vitolo
Nucleic Acids Res. 2000 June 15; 28(12): e62.
PMCID: PMC102747
Loop-mediated isothermal amplification of DNA
Tsugunori Notomi, Hiroto Okayama, Harumi Masubuchi, Toshihiro Yonekawa, Keiko Watanabe, Nobuyuki Amino, and Tetsu Hase
Nucleic Acids Res. 2000 June 15; 28(12): e63.
PMCID: PMC102748
New chromatographic and biochemical strategies for quick preparative isolation of tRNA
Edmundo Cayama, Antonio Yépez, Fernando Rotondo, Eduardo Bandeira, Ana C. Ferreras, and Francisco J. Triana-Alonso
Nucleic Acids Res. 2000 June 15; 28(12): e64.
PMCID: PMC102749
Modification of human β-globin locus PAC clones by homologous recombination in Escherichia coli
A. M. Ali Imam, George P. Patrinos, Mariken de Krom, Stefania Bottardi, Rick J. Janssens, Eleni Katsantoni, Albert W. K. Wai, David J. Sherratt, and Frank G. Grosveld
Nucleic Acids Res. 2000 June 15; 28(12): e65.
PMCID: PMC102750
Preparation of DNA and protein micro arrays on glass slides coated with an agarose film
Victor Afanassiev, Vera Hanemann, and Stefan Wölfl
Nucleic Acids Res. 2000 June 15; 28(12): e66.
PMCID: PMC102751
A simple and efficient method for PCR amplifiable DNA extraction from ancient bones
Tibor Kalmár, Csanád Z. Bachrati, Antónia Marcsik, and István Raskó
Nucleic Acids Res. 2000 June 15; 28(12): e67.
PMCID: PMC102752
A new MALDI-TOF based mini-sequencing assay for genotyping of SNPS
Xiyuan Sun, H. Ding, K. Hung, and Baochuan Guo
Nucleic Acids Res. 2000 June 15; 28(12): e68.
PMCID: PMC102753
Position and degree of mismatches and the mobility of DNA heteroduplexes
David A. Upchurch, Raj Shankarappa, and James I. Mullins
Nucleic Acids Res. 2000 June 15; 28(12): e69.
PMCID: PMC102754
Corrigendum
CORRIGENDUM
Nucleic Acids Res. 2000 June 15; 28(12): 1.
PMCID: PMC102741
Corrects: CORRIGENDUM. Nucleic Acids Res. 2000 June 15; 28(12): 1.
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