| | Articles SURVEY AND SUMMARY: ADEPTs: information necessary for subcellular distribution of eukaryotic sorting isozymes resides in domains missing from eubacterial and archaeal counterparts David R. Stanford, Nancy C. Martin, and Anita K. Hopper PMCID: PMC102526 Crystal structure of the human O6-alkylguanine-DNA alkyltransferase Jane E. A. Wibley, Anthony E. Pegg, and Peter C. E. Moody PMCID: PMC102527 An exonic splicing silencer in the testes-specific DNA ligase III β exon Shern L. Chew, Lysa Baginsky, and Ian C. Eperon PMCID: PMC102500 Members of the SRY family regulate the human LINE retrotransposons Thierry Tchénio, Jean-François Casella, and Thierry Heidmann PMCID: PMC102531 Better conditions for mammalian in vitro splicing provided by acetate and glutamate as potassium counterions Vienna Reichert and Melissa J. Moore PMCID: PMC102525 APOBEC-1 dependent cytidine to uridine editing of apolipoprotein B RNA in yeast Geoffrey S. C. Dance, Mark P. Sowden, Yan Yang, and Harold C. Smith PMCID: PMC102520 Naturally occurring mutations in the human HNF4α gene impair the function of the transcription factor to a varying degree Jörn Lausen, Heike Thomas, Ira Lemm, Michael Bulman, Michael Borgschulze, Anja Lingott, Andrew T. Hattersley, and Gerhart U. Ryffel PMCID: PMC102517 Inhibition of in vitro and ex vivo translation by a transplatin-modified oligo(2′-O-methylribonucleotide) directed against the HIV-1 gag-pol frameshift signal Karine Aupeix-Scheidler, Sandrine Chabas, Laure Bidou, Jean-Pierre Rousset, Marc Leng, and Jean-Jacques Toulmé PMCID: PMC102513 Myc induces the nucleolin and BN51 genes: possible implications in ribosome biogenesis Peter J. Greasley, Claude Bonnard, and Bruno Amati PMCID: PMC102507 HMG boxes of DSP1 protein interact with the Rel homology domain of transcription factors M. Decoville, M. J. Giraud-Panis, C. Mosrin-Huaman, M. Leng, and D. Locker PMCID: PMC102508 Evolutionary origin, diversification and specialization of eukaryotic MutS homolog mismatch repair proteins Kevin M. Culligan, Gilbert Meyer-Gauen, James Lyons-Weiler, and John B. Hays PMCID: PMC102523 Nucleoplasmin-mediated chromatin remodelling is required for Xenopus sperm nuclei to become licensed for DNA replication Peter J. Gillespie and J. Julian Blow PMCID: PMC102529 In vitro selection and characterization of a highly efficient Zn(II)-dependent RNA-cleaving deoxyribozyme Jing Li, Wenchao Zheng, Angela H. Kwon, and Yi Lu PMCID: PMC102519 RNA aptamers for the MS2 bacteriophage coat protein and the wild-type RNA operator have similar solution behaviour Andrew M. Parrott, Hugo Lago, Chris J. Adams, Alison E. Ashcroft, Nicola J. Stonehouse, and Peter G. Stockley PMCID: PMC102504 Visualisation of plasmid replication intermediates containing reversed forks E. Viguera, P. Hernández, D. B. Krimer, R. Lurz, and J. B. Schvartzman PMCID: PMC102505 Histidylated oligolysines increase the transmembrane passage and the biological activity of antisense oligonucleotides Chantal Pichon, Mahajoub Bello Roufaï, Michel Monsigny, and Patrick Midoux PMCID: PMC102506 p73 competes with p53 and attenuates its response in a human ovarian cancer cell line Faina Vikhanskaya, Maurizio D’Incalci, and Massimo Broggini PMCID: PMC102516 The Drosophila homologue of the 64 kDa subunit of cleavage stimulation factor interacts with the 77 kDa subunit encoded by the suppressor of forked gene Lee S. Hatton, Jyrki J. Eloranta, Luisa M. Figueiredo, Yoshio Takagaki, James L. Manley, and Kevin O’Hare PMCID: PMC102530 Sequence-specific binding of Taz1p dimers to fission yeast telomeric DNA Karen G. Spink, Rebecca J. Evans, and Alistair Chambers PMCID: PMC102532 Oligonucleotide-conjugated beads for transdominant genetic experiments Michael J. Feldhaus, Michael Lualhati, Karen Cardon, Bruce Roth, and Alexander Kamb PMCID: PMC102503 Formation of 2′-deoxyoxanosine from 2′-deoxyguanosine and nitrous acid: mechanism and intermediates Toshinori Suzuki, Hiroshi Ide, Masaki Yamada, Nobuyuki Endo, Kenji Kanaori, Kunihiko Tajima, Takashi Morii, and Keisuke Makino PMCID: PMC102522 Bacillus subtilis LrpC is a sequence-independent DNA-binding and DNA-bending protein which bridges DNA Angels Tapias, Gema López, and Silvia Ayora PMCID: PMC102501 The mechanism of complex formation between Fli-1 and SRF transcription factors Pamela Dalgleish and Andrew D. Sharrocks PMCID: PMC102515 The dhfr oriβ-binding protein RIP60 contains 15 zinc fingers: DNA binding and looping by the central three fingers and an associated proline-rich region Christopher R. Houchens, William Montigny, Lori Zeltser, Lisa Dailey, Jonathan M. Gilbert, and N. H. Heintz PMCID: PMC102514 Nucleocytoplasmic shuttling: a novel in vivo property of antisense phosphorothioate oligodeoxynucleotides Peter Lorenz, Tom Misteli, Brenda F. Baker, C. Frank Bennett, and David L. Spector PMCID: PMC102511 Conformational transition in DNA on a cold surface X. Z. Feng, R. Bash, P. Balagurumoorthy, D. Lohr, R. E. Harrington, and S. M. Lindsay PMCID: PMC102510 A single-stranded DNA-binding protein shared by telomeric repeats, the variant surface glycoprotein transcription promoter and the procyclin transcription terminator of Trypanosoma brucei Magali Berberof, Luc Vanhamme, Sylvie Alexandre, Stéphane Lips, Patricia Tebabi, and Etienne Pays PMCID: PMC102509 Measurement of locus copy number by hybridisation with amplifiable probes John A. L. Armour, Carolina Sismani, Philippos C. Patsalis, and Gareth Cross PMCID: PMC102499 Conserved features of Y RNAs: a comparison of experimentally derived secondary structures Sander W. M. Teunissen, Martijn J. M. Kruithof, A. Darise Farris, John B. Harley, Walther J. van Venrooij, and Ger J. M. Pruijn PMCID: PMC102524 The N-terminal region of DNA polymerase δ catalytic subunit is necessary for holoenzyme function Sylvie Briand Schumacher, Manuel Stucki, and Ulrich Hübscher PMCID: PMC102512 A novel Snail-related transcription factor Smuc regulates basic helix–loop–helix transcription factor activities via specific E-box motifs Hiroshi Kataoka, Toshinori Murayama, Masayuki Yokode, Seiichi Mori, Hideto Sano, Harunobu Ozaki, Yoshifumi Yokota, Shin-Ichi Nishikawa, and Toru Kita PMCID: PMC102498 In vitro evidence for the interaction of tRNA3Lys with U3 during the first strand transfer of HIV-1 reverse transcription Fabienne Brulé, Guillaume Bec, Gérard Keith, Stuart F. J. Le Grice, Bernard P. Roques, Bernard Ehresmann, Chantal Ehresmann, and Roland Marquet PMCID: PMC102502 The 5′ stem–loop regulates expression of collagen α1(I) mRNA in mouse fibroblasts cultured in a three-dimensional matrix B. Stefanovic, J. Lindquist, and D. A. Brenner PMCID: PMC102518 WRN helicase expression in Werner syndrome cell lines Michael J. Moser, Ashwini S. Kamath-Loeb, Jessica E. Jacob, Samuel E. Bennett, Junko Oshima, and Raymond J. Monnat, Jr PMCID: PMC102521 3′-Minor groove binder-DNA probes increase sequence specificity at PCR extension temperatures Igor V. Kutyavin, Irina A. Afonina, Alan Mills, Vladimir V. Gorn, Eugeny A. Lukhtanov, Evgeniy S. Belousov, Michael J. Singer, David K. Walburger, Sergey G. Lokhov, Alexander A. Gall, Robert Dempcy, Michael W. Reed, Rich B. Meyer, and Joe Hedgpeth PMCID: PMC102528 NAR Methods Online Cloning of polymorphisms (COP): enrichment of polymorphic sequences from complex genomes Jingfeng Li, Fuli Wang, Veronika Zabarovska, Claes Wahlestedt, and Eugene R. Zabarovsky PMCID: PMC102533 Transcript quantitation in total yeast cellular RNA using kinetic PCR John J. Kang, Robert M. Watson, Mary E. Fisher, Russell Higuchi, David H. Gelfand, and Michael J. Holland PMCID: PMC102534 UPA, a universal protein array system for quantitative detection of protein–protein, protein–DNA, protein–RNA and protein–ligand interactions Hui Ge PMCID: PMC102535 The specificity of protein–DNA crosslinking by formaldehyde: in vitro and in Drosophila embryos Joseph Toth and Mark D. Biggin PMCID: PMC102536 Use of immobilized PCR primers to generate covalently immobilized DNAs for in vitro transcription/translation reactions Joanne D. Andreadis and Linda A. Chrisey PMCID: PMC102537 A method for preparing genomic DNA that restrains branch migration of Holliday junctions Thorsten Allers and Michael Lichten PMCID: PMC102538 Interspersed repetitive sequence (IRS)–PCR for typing of whole genome radiation hybrid panels Heinz Himmelbauer, Leonard C. Schalkwyk, and Hans Lehrach PMCID: PMC102539 Identification and characterisation of novel human Y-chromosomal microsatellites from sequence database information Qasim Ayub, Aisha Mohyuddin, Raheel Qamar, Kehkashan Mazhar, Tatiana Zerjal, S. Qasim Mehdi, and Chris Tyler-Smith PMCID: PMC102540 |
