| | Articles Nucleic Acids Res. 2004; 32(12): 3513. Published online 2004 July 6. doi: 10.1093/nar/gkh704.PMCID: PMC484187 Packaging motor from double-stranded RNA bacteriophage ![[var phi]](corehtml/pmc/pmcents/x03C6.gif) 12 acts as an obligatory passive conduit during transcription Denis E. Kainov, Jiří Lísal, Dennis H. Bamford, and Roman Tuma PMCID: PMC484169 Sequence-based prediction of protein domains Jinfeng Liu and Burkhard Rost PMCID: PMC484172 APE1 is the major 3′-phosphoglycolate activity in human cell extracts Jason L. Parsons, Irina I. Dianova, and Grigory L. Dianov PMCID: PMC484167 Reverse gyrase has heat-protective DNA chaperone activity independent of supercoiling Martin Kampmann and Daniela Stock PMCID: PMC484171 Demarcating the gene-rich regions of the wheat genome Mustafa Erayman, Devinder Sandhu, Deepak Sidhu, Muharrem Dilbirligi, P. S. Baenziger, and Kulvinder S. Gill PMCID: PMC484162 Transcriptional activation of the human prostatic acid phosphatase gene by NF-κB via a novel hexanucleotide-binding site Stanislav Zelivianski, Richard Glowacki, and Ming-Fong Lin PMCID: PMC484168 New strategy for the representation and the integration of biomolecular knowledge at a cellular scale Roland Barriot, Jérôme Poix, Alexis Groppi, Aurélien Barré, Nicolas Goffard, David Sherman, Isabelle Dutour, and Antoine de Daruvar PMCID: PMC484170 The ‘scavenger’ m7GpppX pyrophosphatase activity of Dcs1 modulates nutrient-induced responses in yeast Naglis Malys, Kathleen Carroll, Jaleel Miyan, David Tollervey, and John E. G. McCarthy PMCID: PMC484174 Lack of homologous sequence-specific DNA methylation in response to stable dsRNA expression in mouse oocytes Petr Svoboda, Paula Stein, Witold Filipowicz, and Richard M. Schultz PMCID: PMC484184 Sequence-dependent nucleotide dynamics revealed by intercalated ring rotation in DNA–bisnaphthalimide complexes José Gallego PMCID: PMC484180 Rapid evolution of RNA editing sites in a small non-essential plastid gene Andreas Fiebig, Sandra Stegemann, and Ralph Bock PMCID: PMC484182 A phage display selection of engrailed homeodomain mutants and the importance of residue Q50 Matthew D. Simon, Ken Sato, Gregory A. Weiss, and Kevan M. Shokat PMCID: PMC484177 Human p32, interacts with B subunit of the CCAAT-binding factor, CBF/NF-Y, and inhibits CBF-mediated transcription activation in vitro Chandrani Chattopadhyay, David Hawke, Ryuji Kobayashi, and Sankar N. Maity PMCID: PMC484179 Synthesis and characterization of oligonucleotides containing conformationally constrained bicyclo[3.1.0]hexane pseudosugar analogs Martin A. Maier, Yongseok Choi, Hans Gaus, Joseph J. Barchi, Jr, Victor E. Marquez, and Muthiah Manoharan PMCID: PMC484163 A set of BAC clones spanning the human genome Martin Krzywinski, Ian Bosdet, Duane Smailus, Readman Chiu, Carrie Mathewson, Natasja Wye, Sarah Barber, Mabel Brown-John, Susanna Chan, Steve Chand, Alison Cloutier, Noreen Girn, Darlene Lee, Amara Masson, Michael Mayo, Teika Olson, Pawan Pandoh, Anna-Liisa Prabhu, Eric Schoenmakers, Miranda Tsai, Donna Albertson, Wan Lam, Chik-On Choy, Kazutoyo Osoegawa, Shaying Zhao, Pieter J. de Jong, Jacqueline Schein, Steven Jones, and Marco A. Marra PMCID: PMC484185 The isolation of strand-specific nicking endonucleases from a randomized SapI expression library James C. Samuelson, Zhenyu Zhu, and Shuang-yong Xu PMCID: PMC484165 Specific inhibition of the E.coli RecBCD enzyme by Chi sequences in single-stranded oligodeoxyribonucleotides Avanti Kulkarni and Douglas A. Julin PMCID: PMC484166 Conservative homologous recombination preferentially repairs DNA double-strand breaks in the S phase of the cell cycle in human cells Nasrollah Saleh-Gohari and Thomas Helleday PMCID: PMC484186 Genome-wide operon prediction in Staphylococcus aureus Liangsu Wang, John D. Trawick, Robert Yamamoto, and Carlos Zamudio PMCID: PMC484181 Identification of a functional core in the RNA component of RNase MRP of budding yeasts Xing Li, Sephorah Zaman, Yvette Langdon, Janice M. Zengel, and Lasse Lindahl PMCID: PMC484176 Biological consequences of oxidative stress-induced DNA damage in Saccharomyces cerevisiae Tiffany B. Salmon, Barbara A. Evert, Binwei Song, and Paul W. Doetsch PMCID: PMC484183 Prevalence of intron gain over intron loss in the evolution of paralogous gene families Vladimir N. Babenko, Igor B. Rogozin, Sergei L. Mekhedov, and Eugene V. Koonin PMCID: PMC484173 Transcriptional regulation of the Drosophila caudal homeobox gene by DRE/DREF Yoon-Jeong Choi, Tae-Young Choi, Masamitsu Yamaguchi, Akio Matsukage, Young-Shin Kim, and Mi-Ae Yoo PMCID: PMC484175 Frequent recombination in telomeric DNA may extend the proliferative life of telomerase-negative cells Susan M. Bailey, Mark A. Brenneman, and Edwin H. Goodwin PMCID: PMC484178 Inhibition of HIV-1 multiplication by antisense U7 snRNAs and siRNAs targeting cyclophilin A Songkai Liu, Maria Asparuhova, Vincent Brondani, Ingrid Ziekau, Thomas Klimkait, and Daniel Schümperli PMCID: PMC484190 Exploration of the conserved A+C wobble pair within the ribosomal peptidyl transferase center using affinity purified mutant ribosomes Ashley Eversole Hesslein, Vladimir I. Katunin, Malte Beringer, Anne B. Kosek, Marina V. Rodnina, and Scott A. Strobel PMCID: PMC484164 RPA alleviates the inhibitory effect of vinylphosphonate internucleotide linkages on DNA unwinding by BLM and WRN helicases Patrick L. Garcia, Glyn Bradley, Christopher J. Hayes, Sussie Krintel, Panos Soultanas, and Pavel Janscak PMCID: PMC484189 NAR Methods Online Generation of longer 3′ cDNA fragments from massively parallel signature sequencing tags Ana Paula M. Silva, Jianjun Chen, Dirce M. Carraro, San Ming Wang, and Anamaria A. Camargo PMCID: PMC484194 In vitro selection of restriction endonucleases by in vitro compartmentalization Nobuhide Doi, Shin Kumadaki, Yuko Oishi, Nobutaka Matsumura, and Hiroshi Yanagawa PMCID: PMC484195 Increasing the efficiency of SAGE adaptor ligation by directed ligation chemistry Austin P. So, Robin F. B. Turner, and Charles A. Haynes PMCID: PMC484191 Reverse Sanger sequencing of RNA by MALDI-TOF mass spectrometry after solid phase purification Beatrice Spottke, Julia Gross, Hans-Joachim Galla, and Franz Hillenkamp PMCID: PMC484192 A simple, rapid, high-fidelity and cost-effective PCR-based two-step DNA synthesis method for long gene sequences Ai-Sheng Xiong, Quan-Hong Yao, Ri-He Peng, Xian Li, Hui-Qin Fan, Zong-Ming Cheng, and Yi Li PMCID: PMC484193 Optimization of probe length and the number of probes per gene for optimal microarray analysis of gene expression Cheng-Chung Chou, Chun-Houh Chen, Te-Tsui Lee, and Konan Peck PMCID: PMC484198 Measurement of DNA mismatch repair activity in live cells Xiufen Lei, Yong Zhu, Alan Tomkinson, and LuZhe Sun PMCID: PMC484197 Measuring specific interaction of transcription factor ZmDREB1A with its DNA responsive element at the molecular level Yaxin Jiang, Feng Qin, Yiqin Li, Xiaohong Fang, and Chunli Bai PMCID: PMC484199 A universal transgene silencing method based on RNA interference Philippe-Emmanuel Mangeot, François-Loïc Cosset, Pierre Colas, and Ivan Mikaelian PMCID: PMC484202 Investigations on DNA intercalation and surface binding by SYBR Green I, its structure determination and methodological implications Hubert Zipper, Herwig Brunner, Jürgen Bernhagen, and Frank Vitzthum PMCID: PMC484200 ChIP Display: novel method for identification of genomic targets of transcription factors Artem Barski and Baruch Frenkel PMCID: PMC484196 Preparation of DNA-modified nanoparticles and preliminary study for colorimetric SNP analysis using their selective aggregations Toshihiro Ihara, Shojiro Tanaka, Yasushi Chikaura, and Akinori Jyo PMCID: PMC484203 Design and in vivo characterization of self-inactivating human and non-human lentiviral expression vectors engineered for streptogramin-adjustable transgene expression Barbara Mitta, Cornelia C. Weber, Markus Rimann, and Martin Fussenegger PMCID: PMC484201 Corrigendum Nucleic Acids Res. 2004; 32(12): 3779. Published online 2004 July 16. doi: 10.1093/nar/gkh707.PMCID: PMC484188 Corrects: Jorge Fernandez-de-Cossio, et al. Isotopica: a tool for the calculation and viewing of complex isotopic envelopes. Nucleic Acids Res. 2004 July 1; 32(Web Server issue): W674–W678. |
