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Volume 361(1475);  November 29, 2006
Research Articles
Introduction: species and speciation in micro-organisms
Brian G Spratt, James T Staley, and Matthew C Fisher
Philos Trans R Soc Lond B Biol Sci. 2006 November 29; 361(1475): 1897–1898. Published online 2006 October 6. doi: 10.1098/rstb.2006.1929.
PMCID: PMC1764931
The bacterial species dilemma and the genomic–phylogenetic species concept
James T Staley
Philos Trans R Soc Lond B Biol Sci. 2006 November 29; 361(1475): 1899–1909. Published online 2006 October 11. doi: 10.1098/rstb.2006.1914.
PMCID: PMC1857736
Stepping stones towards a new prokaryotic taxonomy
Dirk Gevers, Peter Dawyndt, Peter Vandamme, Anne Willems, Marc Vancanneyt, Jean Swings, and Paul De Vos
Philos Trans R Soc Lond B Biol Sci. 2006 November 29; 361(1475): 1911–1916. Published online 2006 October 11. doi: 10.1098/rstb.2006.1915.
PMCID: PMC1764938
Sequences, sequence clusters and bacterial species
William P Hanage, Christophe Fraser, and Brian G Spratt
Philos Trans R Soc Lond B Biol Sci. 2006 November 29; 361(1475): 1917–1927. Published online 2006 October 6. doi: 10.1098/rstb.2006.1917.
PMCID: PMC1764932
The bacterial species definition in the genomic era
Konstantinos T Konstantinidis, Alban Ramette, and James M Tiedje
Philos Trans R Soc Lond B Biol Sci. 2006 November 29; 361(1475): 1929–1940. Published online 2006 October 11. doi: 10.1098/rstb.2006.1920.
PMCID: PMC1764935
The spatial scale of genetic differentiation in a model organism: the wild yeast Saccharomyces paradoxus
Vassiliki Koufopanou, Joseph Hughes, Graham Bell, and Austin Burt
Philos Trans R Soc Lond B Biol Sci. 2006 November 29; 361(1475): 1941–1946. Published online 2006 October 6. doi: 10.1098/rstb.2006.1922.
PMCID: PMC1764930
Eukaryotic microbes, species recognition and the geographic limits of species: examples from the kingdom Fungi
John W Taylor, Elizabeth Turner, Jeffrey P Townsend, Jeremy R Dettman, and David Jacobson
Philos Trans R Soc Lond B Biol Sci. 2006 November 29; 361(1475): 1947–1963. Published online 2006 October 6. doi: 10.1098/rstb.2006.1923.
PMCID: PMC1764934
The diversity of microbes: resurgence of the phenotype
Tom Fenchel and Bland J Finlay
Philos Trans R Soc Lond B Biol Sci. 2006 November 29; 361(1475): 1965–1973. Published online 2006 October 6. doi: 10.1098/rstb.2006.1924.
PMCID: PMC1764925
Allopatric origins of microbial species
Rachel J Whitaker
Philos Trans R Soc Lond B Biol Sci. 2006 November 29; 361(1475): 1975–1984. Published online 2006 October 11. doi: 10.1098/rstb.2006.1927.
PMCID: PMC1764937
Towards a conceptual and operational union of bacterial systematics, ecology, and evolution
Frederick M Cohan
Philos Trans R Soc Lond B Biol Sci. 2006 November 29; 361(1475): 1985–1996. Published online 2006 October 6. doi: 10.1098/rstb.2006.1918.
PMCID: PMC1764936
Cyanobacterial ecotypes in the microbial mat community of Mushroom Spring (Yellowstone National Park, Wyoming) as species-like units linking microbial community composition, structure and function
David M Ward, Mary M Bateson, Michael J Ferris, Michael Kühl, Andrea Wieland, Alex Koeppel, and Frederick M Cohan
Philos Trans R Soc Lond B Biol Sci. 2006 November 29; 361(1475): 1997–2008. Published online 2006 October 6. doi: 10.1098/rstb.2006.1919.
PMCID: PMC1764927
Patterns and mechanisms of genetic and phenotypic differentiation in marine microbes
Martin F Polz, Dana E Hunt, Sarah P Preheim, and Daniel M Weinreich
Philos Trans R Soc Lond B Biol Sci. 2006 November 29; 361(1475): 2009–2021. Published online 2006 October 6. doi: 10.1098/rstb.2006.1928.
PMCID: PMC1764928
What is the extent of prokaryotic diversity?
Thomas P Curtis, Ian M Head, Mary Lunn, Stephen Woodcock, Patrick D Schloss, and William T Sloan
Philos Trans R Soc Lond B Biol Sci. 2006 November 29; 361(1475): 2023–2037. Published online 2006 October 6. doi: 10.1098/rstb.2006.1921.
PMCID: PMC1764926
Modelling bacterial speciation
William P Hanage, Brian G Spratt, Katherine M.E Turner, and Christophe Fraser
Philos Trans R Soc Lond B Biol Sci. 2006 November 29; 361(1475): 2039–2044. Published online 2006 October 6. doi: 10.1098/rstb.2006.1926.
PMCID: PMC1764933
Mismatch induced speciation in Salmonella: model and data
Daniel Falush, Mia Torpdahl, Xavier Didelot, Donald F Conrad, Daniel J Wilson, and Mark Achtman
Philos Trans R Soc Lond B Biol Sci. 2006 November 29; 361(1475): 2045–2053. Published online 2006 October 11. doi: 10.1098/rstb.2006.1925.
PMCID: PMC1764929
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