| | Molecular Biology Apoptosis resistance downstream of eIF4E: posttranscriptional activation of an anti-apoptotic transcript carrying a consensus hairpin structure Ola Larsson, David M. Perlman, Danhua Fan, Cavan S. Reilly, Mark Peterson, Cecilia Dahlgren, Zicai Liang, Shunan Li, Vitaly A. Polunovsky, Claes Wahlestedt, and Peter B. Bitterman PMCID: PMC1636353 Evolutionary conservation and regulation of particular alternative splicing events in plant SR proteins Maria Kalyna, Sergiy Lopato, Viktor Voronin, and Andrea Barta PMCID: PMC1636356 Stimulation of Dmc1-mediated DNA strand exchange by the human Rad54B protein Naoyuki Sarai, Wataru Kagawa, Takashi Kinebuchi, Ako Kagawa, Kozo Tanaka, Kiyoshi Miyagawa, Shukuko Ikawa, Takehiko Shibata, Hitoshi Kurumizaka, and Shigeyuki Yokoyama PMCID: PMC1636354 The role of AtMUS81 in DNA repair and its genetic interaction with the helicase AtRecQ4A F. Hartung, S. Suer, T. Bergmann, and H. Puchta PMCID: PMC1636358 CAG·CTG repeat instability in cultured human astrocytes Brian T. Farrell and Robert S. Lahue PMCID: PMC1636369 Tumor inhibition by genomically integrated inducible RNAi-cassettes Sven Kappel, Yves Matthess, Brigitte Zimmer, Manfred Kaufmann, and Klaus Strebhardt PMCID: PMC1636372 Tobacco plastid ribosomal protein S18 is essential for cell survival Marcelo Rogalski, Stephanie Ruf, and Ralph Bock PMCID: PMC1636375 Targeting chromosomal sites with locked nucleic acid-modified triplex-forming oligonucleotides: study of efficiency dependence on DNA nuclear environment Erika Brunet, Maddalena Corgnali, Fabio Cannata, Loïc Perrouault, and Carine Giovannangeli PMCID: PMC1636373 Codon usage bias and tRNA over-expression in Buchnera aphidicola after aromatic amino acid nutritional stress on its host Acyrthosiphon pisum Hubert Charles, Federica Calevro, José Vinuelas, Jean-Michel Fayard, and Yvan Rahbe PMCID: PMC1636365 NOP132 is required for proper nucleolus localization of DEAD-box RNA helicase DDX47 Takeshi Sekiguchi, Toshiya Hayano, Mitsuaki Yanagida, Nobuhiro Takahashi, and Takeharu Nishimoto PMCID: PMC1636366 The Drosophila G9a gene encodes a multi-catalytic histone methyltransferase required for normal development Marianne Stabell, Ragnhild Eskeland, Mona Bjørkmo, Jan Larsson, Reidunn B. Aalen, Axel Imhof, and Andrew Lambertsson PMCID: PMC1636376 Association of nucleoid proteins with coding and non-coding segments of the Escherichia coli genome David C. Grainger, Douglas Hurd, Martin D. Goldberg, and Stephen J. W. Busby PMCID: PMC1636352 RNA Competition for RISC binding predicts in vitro potency of siRNA Erich Koller, Stephanie Propp, Heather Murray, Walter Lima, Balkrishen Bhat, Thaza P. Prakash, Charles R. Allerson, Eric E. Swayze, Eric G. Marcusson, and Nicholas M. Dean PMCID: PMC1636362 Transcriptional and phenotypic comparisons of Ppara knockout and siRNA knockdown mice Angus T. De Souza, Xudong Dai, Andrew G. Spencer, Tom Reppen, Ann Menzie, Paula L. Roesch, Yudong He, Michelle J. Caguyong, Sherri Bloomer, Hans Herweijer, Jon A. Wolff, James E. Hagstrom, David L. Lewis, Peter S. Linsley, and Roger G. Ulrich PMCID: PMC1636368 Characterization of DGCR8/Pasha, the essential cofactor for Drosha in primary miRNA processing Kyu-Hyeon Yeom, Yoontae Lee, Jinju Han, Mi Ra Suh, and V. Narry Kim PMCID: PMC1636349 Structural Biology IS911 transpososome assembly as analysed by tethered particle motion N. Pouget, C. Turlan, N. Destainville, L. Salomé, and M. Chandler PMCID: PMC1636345 The PNA–DNA hybrid I-motif: implications for sugar–sugar contacts in i-motif tetramerization Souvik Modi, Ajazul Hamid Wani, and Yamuna Krishnan PMCID: PMC1636347 Solution structure of the apical stem–loop of the human hepatitis B virus encapsidation signal Sara Flodell, Michael Petersen, Frederic Girard, Janusz Zdunek, Karin Kidd-Ljunggren, Jürgen Schleucher, and Sybren Wijmenga PMCID: PMC1636360 Crystallization and characterization of the thallium form of the Oxytricha nova G-quadruplex Michelle L. Gill, Scott A. Strobel, and J. Patrick Loria PMCID: PMC1636370 Structure of an archaeal PCNA1–PCNA2–FEN1 complex: elucidating PCNA subunit and client enzyme specificity Andrew S. Doré, Mairi L. Kilkenny, Sarah A. Jones, Antony W. Oliver, S. Mark Roe, Stephen D. Bell, and Laurence H. Pearl PMCID: PMC1636371 Spontaneous sharp bending of DNA: role of melting bubbles Chongli Yuan, Elizabeth Rhoades, Xiong Wen Lou, and Lynden A. Archer PMCID: PMC1636343 Recognition of T-rich single-stranded DNA by the cold shock protein Bs-CspB in solution Markus Zeeb, Klaas E.A. Max, Ulrich Weininger, Christian Löw, Heinrich Sticht, and Jochen Balbach PMCID: PMC1636342 Genomics Aberrant 3′ splice sites in human disease genes: mutation pattern, nucleotide structure and comparison of computational tools that predict their utilization Igor Vořechovský PMCID: PMC1636351 Chemistry Synthesis of 2′-O-methyl-RNAs incorporating a 3-deazaguanine, and UV melting and computational studies on its hybridization properties Kohji Seio, Takeshi Sasami, Ryuya Tawarada, and Mitsuo Sekine PMCID: PMC1636341 Chemical synthesis of oligodeoxyribonucleotides containing the Dewar valence isomer of the (6–4) photoproduct and their use in (6–4) photolyase studies Junpei Yamamoto, Kenichi Hitomi, Takeshi Todo, and Shigenori Iwai PMCID: PMC1636357 A modified thymine for the synthesis of site-specific thymine-guanine DNA interstrand crosslinks Jawad Alzeer and Orlando D. Schärer PMCID: PMC1636361 Methods Online Identification of miRNA targets with stable isotope labeling by amino acids in cell culture Jeppe Vinther, Mads M. Hedegaard, Paul P. Gardner, Jens S. Andersen, and Peter Arctander PMCID: PMC1636363 Tapping diversity lost in transformations—in vitro amplification of ligation reactions Daniel Christ, Kristoffer Famm, and Greg Winter PMCID: PMC1636367 A mass spectrometry-based approach for identifying novel DNA polymerase substrates from a pool of dNTP analogues Kristi Kincaid and Robert D. Kuchta PMCID: PMC1636374 A scalable method for multiplex LED-controlled synthesis of DNA in capillaries Sarah Blair, Kathryn Richmond, Matthew Rodesch, Michael Bassetti, and Franco Cerrina PMCID: PMC1636377 Site-specific labeling of supercoiled DNA Alexander Y. Lushnikov, Vladimir N. Potaman, and Yuri L. Lyubchenko PMCID: PMC1636378 Computational Biology Data mining for proteins characteristic of clades Marshall Bern, David Goldberg, and Eugenia Lyashenko PMCID: PMC1636346 MUMMALS: multiple sequence alignment improved by using hidden Markov models with local structural information Jimin Pei and Nick V. Grishin PMCID: PMC1636350 Hematopoietic gene promoters subjected to a group-combinatorial study of DNA samples: identification of a megakaryocytic selective DNA signature Yehonathan Hazony, Jun Lu, Cynthia St. Hilaire, and Katya Ravid PMCID: PMC1636359 Systematic identification of pseudogenes through whole genome expression evidence profiling Alison Yao, Rosane Charlab, and Peter Li PMCID: PMC1636364 Nucleic Acid Enzymes RPA and PCNA suppress formation of large deletion errors by yeast DNA polymerase δ John M. Fortune, Carrie M. Stith, Grace E. Kissling, Peter M. J. Burgers, and Thomas A. Kunkel PMCID: PMC1636344 Direct and random routing of a molecular motor protein at a DNA junction Louise K. Stanley and Mark D. Szczelkun PMCID: PMC1636355 A specific loop in human DNA polymerase mu allows switching between creative and DNA-instructed synthesis Raquel Juárez, José F. Ruiz, Stephanie A. Nick McElhinny, Dale Ramsden, and Luis Blanco PMCID: PMC1636348 |
