Hohnstock, A.M., K.G. Stuart-Keil, E.E. Kull, and Eugene L. Madsen. 2000. Naphthalene and Donor Cell Density Influence Field Conjugation of Naphthalene Catabolism Plasmids. Applied and Environmental Microbiology. (http://aem.asm.org/) 66(7):3088-3092.
Madsen, Eugene L. 2000. Nucleic acid procedures for characterizing the identity and activity of subsurface microorganisms. Hydrogeology Journal. (http://link.springer.de/link/service/journals /10040/tocs.htm) 8:112-125.
Madsen, Eugene L., R. Yager, and S.M. Plummer. 2000. Petroleum hydrocarbons native to a fractured aquifer may serve as electron donors for in situ reductive dechlorination of trichloroethenes contamination. In: Proceedings of the American Society of Microbiology Annual Meeting. Los Angeles, CA. pp.569.
1999
Miller, Daniel N., J.E. Bryant, Eugene L. Madsen, and William C. Ghiorse. 1999. Evaluation and optimization of DNA extraction and purification procedures for soil and sediment samples. Applied and Environmental Microbiology. (http://aem.asm.org/) 65(11):4715-4724.
Wilson, M.S., C. Bakermans, and Eugene L. Madsen. 1999. In situ, real-time catabolic gene expression: Extraction and characterization of naphthalene dioxygenaase mRNA transcripts from groundwater. Applied Microbiology and Biotechnology. (http://link.springer-ny.com/link/service/jour nals/00253/about.htm) 65:80-87.
1998
Madsen, Eugene L. 1998. Epistemology of environmental microbiology. Environmental Science and Technology. (http://pubs.acs.org/journals/esthag/) 32:429-439.
Madsen, Eugene L. 1998. Theoretical and Applied Aspects of Bioremediation: The Influence of microbiological processes on organic compounds in field sites. In: Techniques in Microbial Ecology. Oxford University Press, New York, NY. pp.354-407.
Stuart-Keil, K.G., A.M. Hohnstock, P.M. Dees, J.B. Herrick, and Eugene L. Madsen. 1998. Plasmids responsible for horizontal transfer of naphthalene catabolic genes between bacteria at a coal tar-contaminated site are homologous to pOTG1 from Pseudomonas putida. In: Proceedings of the Annual Meeting of American Society for Microbiology, Atlanta, GA. Atlanta, GA. pp.9816-4.
1997
Bakermans, C. and Eugene L. Madsen. 1997. Progress towards direct cloning of soil DNA. In: Proceedings of the American Society for Microbiology 1997 Annual Meeting. Miami, FL.
Madsen, Eugene L. 1997. Methods for determining biodegradability. In: Manual of Environmental Microbiology. American Society of Microbiology, Washington, DC. pp.709-720.
Madsen, Eugene L., C.L. Mann, S. Bilotta, and R. Yager. 1997. In situ attenuation of chlorinated ethenes by naturally-occurring microorganisms in a fractional dolomite aquifer near Niagara Falls, NY. In: Proceedings of the American Society for Microbiology Annual Meeting ,1997. Miami, FL.
1996
Madsen, Eugene L., C.L. Mann, and S. Bilotta. 1996. Oxygen limitations and aging as explanation for the persistence of naphthalene in coal-tar contaminated surface sediments. Environmental Toxicology and Chemistry. (http://etc.allenpress.com/entconline/?request =index-html) 15:1876-1882.
Sandoli, R.L., William C. Ghiorse, and Eugene L. Madsen. 1996. Regulation of microbial phenanthrene mineralization in sediments by sorbent- sorbate contact time, inoculum, and gamma irradiation-induced sterilization artifacts. Environmental Toxicology and Chemistry. (http://etc.allenpress.com/entconline/?request =index-html) 15:1901-1907.
1995
Ghiorse, William C., J.B. Herrick, R.L. Sandoli, and Eugene L. Madsen. 1995. Natural selection of PAH-degrading bacterial guilds at coal-tar disposal sites. Environmental Health Perspectives. 103(supp.5):103-111.
Miller, Daniel N., Eugene L. Madsen, and William C. Ghiorse. 1995. Detection and enumeration of indigenous Type I and Type II methanotrophs from wetland sediments using a PCR-MPN technique. In: Proceedings of American Society for Microbiology, 1995 National Meeting. pp.338.
66(7):3088-3092. 
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