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Streptococcus mutans Search Results

Record: 1 of 1  
MiniMap tRNA-Glu-2 tRNA-Asn-2 tRNA-Arg-5 IGR1695 IGR1690 IGR1 IGR1693 IGR1692 IGR1694 IGR1691 SMu1962 SMu1961 smc, - SMu1964 htrA,degP, - SMu1963 dnaA, - SMu0001 SMu1959 SMu1960 SMu1962 SMu1961 smc, - SMu1964 htrA,degP, - SMu1963 dnaA, - SMu0001 SMu1959 SMu1960 SMu1962 SMu1961 smc, - SMu1964 htrA,degP, - SMu1963 dnaA, - SMu0001 SMu1959 SMu1960


LANL Gene ID: SMu1961

GenBank Locus Tag: SMU.2161c

DNA Molecule Name:
1  

GenBank ID:
24380489

Gene Name:


Definition:
conserved hypothetical protein

Cellular Location:
Membrane, Cytoplasm [Evidence]

Gene Start:
2027429

Gene Stop:
2026767

Gene Length:
663

Molecular Weight*:
25621

pI*:
10.70

Net Charge*:
12.42

EC:
 

Functional Class:
Unknown  

Gene Ontology:

Pathway: pathway table

Comment:


View in HOMD Genome Viewer

Blast Summary:  PSI-Blast Search
Few matches to conserved hypothetical proteins in gapped BLAST. Residues 3-217 are 42% similar to conserved hypothetical protein of Streptococcus pyogenes (15674550). Residues 9-195 are 32% similar to unknown protein of Lactococcus lactis (15674045).







The best hit to the Streptococcus agalactiae 2603 V/R genome is to SAG1559 (1e-43).


Top Blast Hits:  Updated monthly
Click here to view the entire PsiBlast results.
 gi|24380489|ref|NP_722444.1|  hypothetical protein SMU.2161c...   341   1e-92
 gi|146319844|ref|YP_001199556.1|  Predicted membrane protein...   188   2e-46
 gi|81097163|ref|ZP_00875470.1|  Protein of unknown function ...   186   1e-45
 gi|55821989|ref|YP_140431.1|  Conserved hypothetical, predic...   183   7e-45
 gi|21909835|ref|NP_664103.1|  hypothetical protein SpyM3_029...   182   1e-44
 gi|15674550|ref|NP_268724.1|  hypothetical protein SPy_0421 ...   181   2e-44
 gi|94989851|ref|YP_597951.1|  hypothetical membrane spanning...   181   2e-44
 gi|19745561|ref|NP_606697.1|  hypothetical protein spyM18_04...   181   2e-44
 gi|94993739|ref|YP_601837.1|  hypothetical membrane spanning...   181   3e-44
 gi|94987978|ref|YP_596079.1|  hypothetical membrane spanning...   181   3e-44


InterPro Summary:  InterProScan

InterPro
IPR010699
Family
Protein of unknown function DUF1275
PF06912 [11-215]T 6.299981794347412E-76 PF06912 DUF1275 DUF1275


COGS Summary:  COGS Search
No hits to the COGs database.
Blocks Summary:  Blocks Search
No significant hits to the Blocks database.

 ProDom Summary:  Protein Domain Search
Residues 9-204 are 33% similar to a (PROTEOME COMPLETE) protein domain (PD119110 which is seen in Q9CDY8_LACLA.


Paralogs:  Local Blast Search
SMu1961 is paralogously related (blast p-value < 1e-3) to SMu0127, a predicted conserved hypothetical protein.


Pfam Summary:  Pfam Search
Residues 11 to 215 (E-value = 5.6e-79) place SMu1961 in the DUF1275 family which is described as Protein of unknown function (DUF1275) (PF06912)

 Structural Feature(s):
Feature Type  Start  Stop
transmembrane  
59  
75
transmembrane  
96  
112
transmembrane  
115  
131
transmembrane  
171  
187
transmembrane  
198  
214

Top PDB Hits:
No significant hits to the NCBI PDB database.

Gene Protein Sequence:
MTKDYQNFEGLRVAMLLTFMSGFIDAYTFITQGGRFASMQTGNLLYMMMK
FADGHFKEAFSFFIPIIFFILGQFFYYFLRKWITPKNLRWHKSSTYVLFI
LLSVIAIFSPILPSIFTIAGLAFFASIQLATFKRVRGYPYTNTMMTGNIK
NAAYLFLKGSVEKNEQIRKQAFYIFMAIIMFMIGVLLSTVMCRYLIKSSL
YFLLLPMLALIYFLNKEEAL

Gene Nucleotide Sequence:  Sequence Viewer
ATGACAAAAGATTATCAAAATTTTGAAGGTTTAAGAGTAGCTATGCTTCT
AACTTTTATGAGTGGTTTTATTGATGCTTATACATTTATTACACAAGGCG
GGCGCTTTGCTAGCATGCAAACCGGAAATCTTCTGTATATGATGATGAAA
TTTGCAGATGGTCATTTTAAAGAAGCTTTTAGTTTTTTTATTCCGATTAT
TTTCTTTATTTTAGGACAATTTTTCTACTATTTTCTTAGAAAGTGGATTA
CACCTAAAAATTTAAGGTGGCATAAATCAAGTACTTATGTATTATTTATT
TTATTATCTGTTATAGCTATTTTTAGTCCGATTTTACCCTCTATTTTTAC
GATTGCGGGATTAGCCTTTTTCGCTTCTATTCAACTAGCAACCTTCAAAA
GAGTCAGAGGTTATCCTTATACTAATACTATGATGACTGGAAATATAAAA
AATGCTGCTTATCTTTTTCTTAAGGGTAGTGTAGAAAAAAATGAGCAGAT
TAGAAAGCAGGCTTTTTATATTTTTATGGCTATTATTATGTTTATGATAG
GCGTTTTACTATCAACTGTTATGTGCCGTTATTTAATCAAAAGTAGTTTA
TATTTTTTACTTTTGCCTATGTTAGCCTTAATTTATTTTTTAAATAAAGA
AGAAGCCCTTTAG

Los Alamos National Laboratory • Est 1943

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