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Streptococcus mutans Search Results

Record: 1 of 1  
MiniMap IGR1472 IGR1467 IGR1471 IGR1465 IGR1468 IGR1469 IGR1466 IGR1470 SMu1701 mutS2, - SMu1700 SMu1706 lepC,spi, - SMu1704 manM,ptnC, - SMu1708 rnh3,rnhC, - SMu1703 manN,ptnD, - SMu1709 manL,ptnAB, - SMu1707 recD, - SMu1705 SMu1701 mutS2, - SMu1700 SMu1706 lepC,spi, - SMu1704 manM,ptnC, - SMu1708 rnh3,rnhC, - SMu1703 manN,ptnD, - SMu1709 manL,ptnAB, - SMu1707 recD, - SMu1705 mutS2, - SMu1700 SMu1702 SMu1701 SMu1702 SMu1706 lepC,spi, - SMu1704 manM,ptnC, - SMu1708 rnh3,rnhC, - SMu1703 manN,ptnD, - SMu1709 manL,ptnAB, - SMu1707 recD, - SMu1705


LANL Gene ID: SMu1705

GenBank Locus Tag: SMU.1875

DNA Molecule Name:
1  

GenBank ID:
24380231

Gene Name:
recD  

Definition:
exodeoxyribonuclease V alpha subunit

Cellular Location:
Cytoplasm, Extracellular [Evidence]

Gene Start:
1766522

Gene Stop:
1768885

Gene Length:
2364

Molecular Weight*:
88880

pI*:
5.60

Net Charge*:
-13.91

EC:
3.1.11.5  

Functional Class:
DNA metabolism; DNA replication, recombination, and repair  

Gene Ontology:
Molecular function
  GO:0000166    nucleotide binding
  GO:0017111    nucleoside-triphosphatase activity


Pathway: pathway table

Comment:
For other 'rec' genes see SMu0021 (recO);SMu0532 (recN); SMu0545 (recR),(recM);SMu1956 (recF); SMu1892 (recA) ; SMu0425 (recU); SMu1669 (recG) and SMu1339 (recJ).



View in HOMD Genome Viewer

Blast Summary:  PSI-Blast Search
Matches in gapped BLAST to exodeoxyribonuclease V (alpha subunit) and to conjugation transfer proteins. Residues 1-787 are 65% similar to gi15675669 from S.pyogene and 60% similar to gi15902407 from S.pneumoniae.





The best hit to the Streptococcus agalactiae 2603 V/R genome is to SAG1724 (0.0).


Top Blast Hits:  Updated monthly
Click here to view the entire PsiBlast results.
 gi|24380231|ref|NP_722186.1|  putative exodeoxyribonuclease ...  1463   0.0  
 gi|25011808|ref|NP_736203.1|  hypothetical protein gbs1769 [...  1091   0.0  
 gi|77412139|ref|ZP_00788462.1|  helicase, RecD/TraA family [...  1090   0.0  
 gi|22537863|ref|NP_688714.1|  helicase, putative [Streptococ...  1089   0.0  
 gi|71904216|ref|YP_281019.1|  exodeoxyribonuclease V alpha c...  1084   0.0  
 gi|94995021|ref|YP_603119.1|  Exodeoxyribonuclease V alpha c...  1076   0.0  
 gi|56808623|ref|ZP_00366350.1|  COG0507: ATP-dependent exoDN...  1075   0.0  
 gi|15675669|ref|NP_269843.1|  putative exodeoxyribonuclease ...  1075   0.0  
 gi|94989201|ref|YP_597302.1|  exodeoxyribonuclease V alpha c...  1075   0.0  
 gi|94991142|ref|YP_599242.1|  Exodeoxyribonuclease V alpha c...  1073   0.0


InterPro Summary:  InterProScan

InterPro
IPR003593
Domain
AAA+ ATPase, core
SM00382 [344-495]T 4.8000000000000294E-6 SM00382 AAA AAA
InterPro
IPR006345
Family
Helicase RecD/TraA
TIGR01448 [5-731]T 0.0 TIGR01448 recD_rel recD_rel
InterPro
IPR010994
Domain
RuvA domain 2-like
SSF47781 [94-166]T 0.015 SSF47781 RuvA_2_like RuvA_2_like
noIPR
unintegrated
unintegrated
G3DSA:3.40.50.300 [320-466]T 1.79999951654676E-4 G3DSA:3.40.50.300 G3DSA:3.40.50.300 G3DSA:3.40.50.300
SSF52540 [320-719]T 3.9E-64 SSF52540 SSF52540 SSF52540


COGS Summary:  COGS Search
BeTs to 6 clades of COG0507
COG name: ATP-dependent exoDNAse (exonuclease V), alpha subunit - helicase superfamily I member
Functional Class: L
The phylogenetic pattern of COG0507 is -m--Y---ebrh----o-IN-
Number of proteins in this genome belonging to this COG is 1
Blocks Summary:  Blocks Search
***** IPB000212 (UvrD/REP helicase) with a combined E-value of 1.6e-12.
    IPB000212A    352-362
    IPB000212B    384-401
    IPB000212F    659-677
    IPB000212G    687-699


 ProDom Summary:  Protein Domain Search
Residues 405-479 are 58% similar to a (V EXODEOXYRIBONUCLEASE PROTEOME COMPLETE) protein domain (PD360018 which is seen in Q9CEU4_LACLA.

Residues 159-412 are 25% similar to a (PROTEOME MJ1519 COMPLETE) protein domain (PD116435 which is seen in Q58914_METJA.

Residues 586-660 are 68% similar to a (PROTEOME COMPLETE EXODEOXYRIBONUCLEASE) protein domain (PD413493 which is seen in Q9CEU4_LACLA.

Residues 662-731 are 62% similar to a (HELICASE DNA COMPLETE PROTEOME ATP-DEPENDENT ATP-BINDING) protein domain (PD002094 which is seen in Q9CEU4_LACLA.

Residues 599-718 are 40% similar to a (V EXODEOXYRIBONUCLEASE ALPHA PROTEOME) protein domain (PD008273 which is seen in O84036_CHLTR.

Residues 4-83 are 52% similar to a (PROTEOME COMPLETE EXODEOXYRIBONUCLEASE) protein domain (PD134882 which is seen in Q9CEU4_LACLA.

Residues 84-295 are 54% similar to a (V PROTEOME EXODEOXYRIBONUCLEASE COMPLETE) protein domain (PD188445 which is seen in Q9CEU4_LACLA.

Residues 488-582 are 56% similar to a (V EXODEOXYRIBONUCLEASE ALPHA PROTEOME) protein domain (PD101002 which is seen in Q9CEU4_LACLA.


Paralogs:  Local Blast Search
SMu1705 has no significant similarity (blastp p-value < 1e-3) to any other gene in this genome.


Pfam Summary:  Pfam Search
No significant hits to the Pfam 11.0 database

 Top PDB Hits:
No significant hits to the NCBI PDB database.

Gene Protein Sequence:
MTYYFSGTIDRVIFENTSNFFKIILLEIDDTDSDFDDFEIIVTGTIADVI
EGENYTFWGELTQHPKYGQQLKVERYQRAKPSSAGLIKYFSSQHFKGIGK
KTAEKIIHLYGDDPIDNILEDPDKLESISGLSKANRENLVSKLRLNYGAE
QILAKLAEYGLNNKTAVQIFERYKEESLTVITENPYQLVEDIQGIGFKMA
DKLAEQVGINSDAPQRFRAALVHTLLETSIDKGDTYIEAKELLEKSLFIL
EEVRQVELDPSQIAQELTQLISEDKVQNIGTKIFDNTLFYAESGIHKHLT
RILDRPLEKEISSQDIQTEIKHIQAEFNINYDKAQKNAIQKAIQSKVFLL
TGGPGTGKTTVINGIIKAYANLHQIDLQKSDRPIILAAPTGRAARRMNEL
TGLPSATIHRHLGLNGDSEYQALDDFLDCDLIIIDEFSMVDTWLANQLFS
AIASNTQVIIVGDSDQLPSVGPGQILADLLKINRLPQVSLTKIFRQSEDS
TIVTLANQIRQGRLPTDFTAKKADRSYFEAQSTHIPQMIQKIVSSALKSG
IDAQEIQILAPMYRGQAGITHLNKLMQDLLNPLNNQLEFQFNDLHFRKGD
KVLHLINDAQINVFNGDIGYITDLIPAKYTESKQDEMILDFDGTEINYPR
NEWLKITLAYAMSIHKSQGSEFKVVILPVTRQSGRLLQRNLIYTAITRSK
SKLVMLGEIAAFDNAIKNEGTKRKTYLIERFKKDECSGHHNTEKNKQGVK
ESAAILKEDFILTERNILTIDPMIGLSQADIDLFFKK

Gene Nucleotide Sequence:  Sequence Viewer
ATGACCTATTACTTTTCAGGCACCATTGACCGTGTTATTTTTGAAAATAC
CAGCAATTTTTTTAAAATTATTCTTCTGGAAATTGACGATACTGACAGCG
ATTTTGATGATTTTGAAATTATTGTGACAGGTACTATTGCTGATGTTATT
GAAGGAGAAAACTATACTTTTTGGGGTGAATTGACCCAGCATCCTAAATA
TGGACAGCAGTTAAAAGTGGAAAGATACCAGCGTGCTAAACCCTCTTCTG
CTGGTCTGATTAAGTATTTTTCCAGTCAGCATTTCAAGGGAATCGGGAAA
AAAACAGCCGAAAAAATTATTCACTTATATGGTGATGACCCTATTGATAA
TATTCTGGAAGATCCTGATAAGTTAGAAAGCATTAGTGGACTTTCTAAGG
CTAATAGAGAAAATTTAGTTAGTAAACTTCGTCTTAACTACGGTGCTGAA
CAGATTCTGGCAAAATTAGCAGAATATGGATTAAATAACAAAACAGCTGT
TCAAATTTTTGAACGCTATAAAGAAGAAAGTTTGACTGTTATTACTGAAA
ATCCTTATCAACTGGTTGAGGACATTCAAGGCATTGGATTCAAAATGGCT
GACAAATTAGCAGAACAAGTAGGTATTAACAGCGATGCTCCTCAGCGTTT
TCGTGCTGCTCTTGTTCATACTCTTTTAGAAACCTCTATTGACAAAGGTG
ACACCTATATTGAAGCCAAAGAATTACTCGAAAAATCTCTTTTTATTCTT
GAAGAGGTGAGACAAGTCGAACTGGATCCCAGTCAAATTGCTCAGGAACT
GACACAATTAATCTCCGAAGATAAGGTACAAAATATTGGTACTAAAATCT
TTGATAATACGCTTTTTTATGCCGAATCAGGCATTCATAAGCATCTTACC
CGCATTCTGGATAGACCACTTGAAAAAGAGATCAGCAGCCAAGACATTCA
AACTGAAATTAAACATATTCAAGCAGAATTTAATATTAACTATGACAAAG
CACAAAAAAATGCTATCCAAAAAGCCATCCAAAGCAAGGTTTTCCTTTTA
ACAGGCGGTCCAGGAACCGGAAAAACGACTGTCATCAATGGAATTATTAA
GGCTTATGCTAATTTGCATCAAATTGACCTGCAAAAAAGTGACCGACCTA
TTATTCTGGCTGCCCCGACTGGTCGTGCTGCTAGACGGATGAATGAGCTA
ACAGGTTTACCTAGTGCCACCATTCACCGGCATTTAGGACTTAATGGTGA
TAGTGAATATCAGGCACTTGATGATTTTCTGGATTGTGATCTCATTATTA
TTGACGAGTTTTCTATGGTTGATACTTGGCTAGCCAATCAATTGTTTAGT
GCTATTGCTTCAAATACACAAGTTATCATTGTTGGTGATAGCGATCAGCT
CCCATCCGTCGGTCCAGGTCAAATTTTGGCTGATTTACTGAAAATAAATA
GATTACCGCAAGTTTCCTTAACTAAAATATTCAGGCAATCTGAGGACTCA
ACTATTGTCACACTTGCCAACCAGATTCGCCAAGGTCGTCTTCCAACTGA
CTTCACAGCTAAAAAGGCTGACCGTTCTTATTTTGAAGCACAGAGCACTC
ACATTCCGCAAATGATTCAAAAGATTGTCAGTTCTGCCCTTAAAAGTGGT
ATAGATGCTCAGGAAATACAGATTTTAGCACCGATGTATCGTGGGCAAGC
AGGTATTACGCATCTTAATAAACTGATGCAAGATTTGCTCAATCCTTTAA
ATAACCAGTTAGAATTTCAATTTAATGACCTTCATTTTCGTAAGGGCGAT
AAAGTACTTCATCTTATCAACGATGCGCAAATTAACGTGTTTAATGGTGA
CATTGGGTACATTACTGATCTTATTCCTGCAAAATATACAGAGTCCAAAC
AAGATGAAATGATTCTGGATTTTGATGGAACTGAGATTAACTATCCTCGC
AATGAATGGTTGAAAATAACACTCGCTTACGCTATGAGTATCCACAAATC
TCAAGGCAGTGAATTTAAAGTAGTTATTCTTCCTGTCACACGCCAAAGCG
GCAGACTTTTGCAACGCAATCTCATTTATACAGCTATCACACGCTCAAAA
AGCAAACTTGTCATGTTGGGAGAAATTGCAGCCTTTGACAACGCCATCAA
AAATGAAGGAACTAAAAGAAAAACTTATCTTATTGAACGCTTTAAGAAGG
ATGAATGCAGTGGCCACCATAACACCGAGAAAAATAAACAAGGAGTAAAA
GAAAGTGCAGCTATATTAAAAGAAGATTTTATTTTGACAGAAAGAAATAT
CTTAACGATTGACCCTATGATTGGCTTATCTCAAGCTGACATTGACTTAT
TTTTTAAGAAATAA

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