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Streptococcus mutans Search Results

Record: 1 of 1  
MiniMap IGR1252 IGR1253 IGR1255 IGR1248 IGR1249 IGR1247 IGR1256 IGR1251 IGR1257 celC,licA, - SMu1453 celB,licB, - SMu1455 SMu1452 SMu1448 cah, - SMu1450 regM,ccpA, - SMu1446 celB,lacE, - SMu1451 celA,bglA, - SMu1456 celR,bglG,licR, - SMu1454 frp, - SMu1457 pepQ, - SMu1447 celC,licA, - SMu1453 celB,licB, - SMu1455 SMu1452 SMu1448 cah, - SMu1450 regM,ccpA, - SMu1446 celB,lacE, - SMu1451 celA,bglA, - SMu1456 celR,bglG,licR, - SMu1454 frp, - SMu1457 pepQ, - SMu1447 celB,licB, - SMu1455 SMu1452 SMu1448 cah, - SMu1450 regM,ccpA, - SMu1446 celB,lacE, - SMu1451 celA,bglA, - SMu1456 celR,bglG,licR, - SMu1454 celC,licA, - SMu1453 frp, - SMu1457 pepQ, - SMu1447


LANL Gene ID: SMu1452

GenBank Locus Tag: SMU.1597c

DNA Molecule Name:
1  

GenBank ID:
24379978

Gene Name:


Definition:
conserved hypothetical protein

Cellular Location:
Membrane, Cytoplasm [Evidence]

Gene Start:
1528514

Gene Stop:
1527996

Gene Length:
519

Molecular Weight*:
20683

pI*:
10.60

Net Charge*:
14.56

EC:
 

Functional Class:
Unknown  

Gene Ontology:

Pathway: pathway table

Comment:


View in HOMD Genome Viewer

Blast Summary:  PSI-Blast Search
Only matches to hypothetical protein in gapped BLAST:residues
5-164 are 31% similar to 15900242| in S.pneumoniae





SMu1452 has no significant similarity (BLAST p-value < 1e-3) to Streptococcus agalactiae


Top Blast Hits:  Updated monthly
Click here to view the entire PsiBlast results.
 gi|24379978|ref|NP_721933.1|  hypothetical protein SMU.1597c...   282   6e-75
 gi|81096841|ref|ZP_00875169.1|  conserved hypothetical prote...   121   1e-26
 gi|157075989|gb|ABV10672.1|  conserved hypothetical protein ...    89   1e-16
 gi|15900242|ref|NP_344846.1|  hypothetical protein SP_0309 [...    83   6e-15
 gi|15902325|ref|NP_357875.1|  hypothetical protein spr0281 [...    83   7e-15
 gi|149006058|ref|ZP_01829787.1|  cellobiose phosphotransfera...    82   9e-15
 gi|148988067|ref|ZP_01819530.1|  cellobiose phosphotransfera...    82   1e-14
 gi|149018001|ref|ZP_01834460.1|  cellobiose phosphotransfera...    82   2e-14
 gi|148983711|ref|ZP_01817030.1|  cellobiose phosphotransfera...    81   3e-14
 gi|149013035|ref|ZP_01833901.1|  cellobiose phosphotransfera...    80   3e-14


InterPro Summary:  InterProScan

noIPR
unintegrated
unintegrated
signalp [1-75]? NA signalp signal-peptide signal-peptide
tmhmm [28-48]? NA tmhmm transmembrane_regions[58-78]? NA tmhmm transmembrane_regions[99-121]? NA tmhmm transmembrane_regions[127-147]? NA tmhmm transmembrane_regions transmembrane_regions


COGS Summary:  COGS Search
No hits to the COGs database.
Blocks Summary:  Blocks Search
No significant hits to the Blocks database.

 ProDom Summary:  Protein Domain Search
No significant hits to the ProDom database.

Paralogs:  Local Blast Search
SMu1452 has no significant similarity (blastp p-value < 1e-3) to any other gene in this genome.


Pfam Summary:  Pfam Search
No significant hits to the Pfam 11.0 database

 Structural Feature(s):
Feature Type  Start  Stop
transmembrane  
37  
53
transmembrane  
58  
74
transmembrane  
94  
110
transmembrane  
127  
143

Top PDB Hits:
No significant hits to the NCBI PDB database.

Gene Protein Sequence:
MCHQLSKKTKKALDQELKRKTTLKNNLFSRYLLFRYSLALFFFVNLYWTF
PLIYKPSVYVILPVSLLILIVLACAEQFKLYSLQEVYLRNTERVFKTQIV
VQILLLIINIFPQQLSVAIPFFSNNMAAHVFLAVFQFLGLFICWYNLKRI
KQIKNNEDKFYNRFYNHIEKYI

Gene Nucleotide Sequence:  Sequence Viewer
ATGTGTCATCAATTAAGTAAAAAAACCAAAAAAGCTCTTGATCAAGAATT
GAAACGAAAGACGACCTTAAAAAATAATTTATTTTCTCGTTATCTGCTTT
TTAGATATAGTTTGGCTCTATTTTTCTTTGTCAATCTTTATTGGACATTT
CCTCTCATTTATAAGCCAAGTGTCTATGTTATTTTGCCAGTGAGTTTGTT
AATACTAATTGTTTTAGCTTGTGCTGAACAATTTAAACTATATAGCCTTC
AAGAAGTTTATTTGAGAAATACTGAACGGGTTTTCAAGACTCAAATAGTT
GTTCAAATTTTATTATTAATCATCAACATTTTTCCTCAACAATTATCAGT
GGCTATTCCTTTCTTTTCAAATAATATGGCAGCACATGTATTTCTTGCTG
TATTTCAATTTTTGGGTTTGTTTATTTGCTGGTATAATCTTAAACGTATC
AAACAAATCAAGAATAATGAAGACAAATTTTATAATCGTTTTTACAACCA
TATTGAAAAGTATATTTAA

Los Alamos National Laboratory • Est 1943

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