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Streptococcus mutans Search Results

Record: 1 of 1  
MiniMap IGR1218 IGR1211 IGR1217 IGR1214 IGR1216 IGR1210 IGR1213 IGR1219 IGR1212 SMu1413 SMu1411 SMu1404 yvfR, - SMu1410 SMu1414 hk11,yvfT, - SMu1407 SMu1402 ligA, - SMu1403 pul, - SMu1401 SMu1405 SMu1413 SMu1411 SMu1404 yvfR, - SMu1410 SMu1414 hk11,yvfT, - SMu1407 SMu1402 ligA, - SMu1403 pul, - SMu1401 SMu1405 SMu1404 yvfR, - SMu1410 SMu1414 hk11,yvfT, - SMu1407 SMu1402 ligA, - SMu1403 pul, - SMu1401 SMu1412 rr11,yocG, - SMu1406 SMu1409 rr11,yocG, - SMu1406 SMu1409 SMu1411 SMu1413 SMu1412 SMu1405


LANL Gene ID: SMu1405

GenBank Locus Tag: SMU.1546

DNA Molecule Name:
1  

GenBank ID:
24379933

Gene Name:


Definition:
conserved hypothetical protein

Cellular Location:
Membrane, Cytoplasm [Evidence]

Gene Start:
1474220

Gene Stop:
1474678

Gene Length:
459

Molecular Weight*:
17965

pI*:
11.00

Net Charge*:
11.46

EC:
 

Functional Class:
Unknown  

Gene Ontology:
Biological process
  GO:0000271    polysaccharide biosynthetic process
  GO:0006810    transport

Cellular component
  GO:0016021    integral to membrane


Pathway: pathway table

Comment:


View in HOMD Genome Viewer

Blast Summary:  PSI-Blast Search
Matches in gapped BLAST to unknowns and different kinds of proteins:residues 10-138 are 38% similar to GtrA family protein from S.pneumoniae (15900883|) and are 28% similar to unknown from Lactococcus lactis (15672596|)








The best hit to the Streptococcus agalactiae 2603 V/R genome is to SAG0848 (1e-25).


Top Blast Hits:  Updated monthly
Click here to view the entire PsiBlast results.
 gi|24379933|ref|NP_721888.1|  hypothetical protein SMU.1546 ...   208   9e-53
 gi|125718297|ref|YP_001035430.1|  hypothetical protein SSA_1...   117   2e-25
 gi|55821257|ref|YP_139699.1|  Conserved hypothetical, predic...   113   3e-24
 gi|55823168|ref|YP_141609.1|  hypothetical protein, GtrA fam...   112   7e-24
 gi|116627994|ref|YP_820613.1|  Conserved membrane protein, G...   112   7e-24
 gi|81097212|ref|ZP_00875514.1|  GtrA-like protein [Streptoco...   112   9e-24
 gi|157075781|gb|ABV10464.1|  mesH proteine [Streptococcus go...   111   1e-23
 gi|146319269|ref|YP_001198981.1|  Predicted membrane protein...   111   2e-23
 gi|76787625|ref|YP_329593.1|  GtrA family protein [Streptoco...   106   4e-22
 gi|76799898|ref|ZP_00781913.1|  GtrA family protein [Strepto...   105   7e-22


InterPro Summary:  InterProScan

InterPro
IPR007267
Family
GtrA-like protein
PF04138 [20-146]T 2.89999717862172E-12 PF04138 GtrA GtrA


COGS Summary:  COGS Search
No hits to the COGs database.
Blocks Summary:  Blocks Search
No significant hits to the Blocks database.

 ProDom Summary:  Protein Domain Search
Residues 21-138 are 28% similar to a (PROTEOME COMPLETE EPR-GALK TRANSMEMBRANE) protein domain (PD294801 which is seen in Q9CHV4_LACLA.


Paralogs:  Local Blast Search
SMu1405 has no significant similarity (blastp p-value < 1e-3) to any other gene in this genome.


Pfam Summary:  Pfam Search
Residues 20 to 146 (E-value = 2.6e-15) place SMu1405 in the GtrA family which is described as GtrA-like protein (PF04138)

 Structural Feature(s):
Feature Type  Start  Stop
transmembrane  
47  
63
transmembrane  
86  
102

Top PDB Hits:
No significant hits to the NCBI PDB database.

Gene Protein Sequence:
MKRLLRNETLKKIITHETSKYIFFGILTTFVYFLTRTPLFFITKEATLSA
VIANVTSITFAFFTNDYFVFNQKRQGWLKRFIQFFIARLSTLALDLLLAF
LLVDKFPGIIGRFVRNNHDMINFIETIISQFLIMATNYIISKFFIFKNKK
ES

Gene Nucleotide Sequence:  Sequence Viewer
ATGAAAAGATTACTACGCAATGAAACCCTAAAAAAGATTATTACCCATGA
AACTTCCAAATATATTTTTTTCGGCATTCTGACTACCTTTGTCTATTTTC
TAACACGGACGCCGCTCTTTTTCATTACTAAAGAAGCTACTCTTTCAGCA
GTCATTGCTAATGTCACTTCTATTACCTTTGCCTTCTTTACCAATGATTA
TTTTGTTTTTAACCAAAAACGTCAAGGCTGGCTGAAACGTTTTATTCAAT
TTTTCATCGCCCGTCTATCAACCTTAGCACTTGATTTGCTGCTGGCCTTT
TTACTTGTTGACAAGTTTCCGGGTATTATCGGCCGTTTTGTCAGAAACAA
TCATGATATGATTAATTTTATTGAAACCATTATTTCACAGTTTTTGATTA
TGGCAACCAATTATATCATCAGTAAATTCTTTATTTTTAAAAATAAAAAA
GAGAGCTAA

Los Alamos National Laboratory • Est 1943

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