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Streptococcus mutans Search Results

Record: 1 of 1  
MiniMap IGR1064 IGR1072 IGR1069 IGR1070 IGR1067 IGR1074 IGR1071 IGR1073 IGR1066 IGR1065 IGR1068 IGR1076 IGR1075 SMu1236 tpn, - SMu1244 tpn, - SMu1238 tnp, - SMu1237 yjjB, - SMu1243 psaA, - SMu1231 ylbB, - SMu1230 ylbB, - SMu1245 SMu1240 SMu1241 SMu1235 SMu1239 SMu1233 SMu1232 SMu1236 tpn, - SMu1244 tpn, - SMu1238 tnp, - SMu1237 yjjB, - SMu1243 psaA, - SMu1231 ylbB, - SMu1230 ylbB, - SMu1245 SMu1240 SMu1241 SMu1235 SMu1239 SMu1233 SMu1232 Type: tandem, Name: SMu-TR-22 - 22 Type: tandem, Name: SMu-TR-22 - 22 tpn, - SMu1244 tpn, - SMu1238 tnp, - SMu1237 yjjB, - SMu1243 psaA, - SMu1231 ylbB, - SMu1230 ylbB, - SMu1245 SMu1242 bacT,btsT, - SMu1229 bacT,btsT, - SMu1229 SMu1242 SMu1236 SMu1239 SMu1232 SMu1234 SMu1241 SMu1233 SMu1240 SMu1235 SMu1234


LANL Gene ID: SMu1234

GenBank Locus Tag: SMU.1352

DNA Molecule Name:
1  

Genomic Island ID:
12

GenBank ID:
24379763

 Gene Name:


 Definition:
transposase

 Cellular Location:
Extracellular [Evidence]

 Gene Start:
1292790

Gene Stop:
1293113

Gene Length:
324

Molecular Weight*:
12575

pI*:
10.80

Net Charge*:
11.61

EC:
 

 Functional Class:
Mobile and extrachromosomal element functions; Transposon functions  

 Gene Ontology:
Biological process
  GO:0015074    DNA integration

Molecular function
  GO:0003677    DNA binding


 Pathway: pathway table

 Comment:


 View in HOMD Genome Viewer

 Blast Summary:  PSI-Blast Search
Matches in gapped BLAST to transposase:residues 25-107 are 60% similar to 15672035|, 565038|,and 2467221| as seen in L. lactis.





The best hit to the Streptococcus agalactiae 2603 V/R genome is to SAG0639 (1e-09).


 Top Blast Hits:  Updated monthly
Click here to view the entire PsiBlast results.
 gi|24379763|ref|NP_721718.1|  putative transposase [Streptoc...   221   1e-56
 gi|71909981|ref|YP_281531.1|  transposase [Streptococcus pyo...   158   1e-37
 gi|94991675|ref|YP_599774.1|  Transposase [Streptococcus pyo...   153   2e-36
 gi|125623904|ref|YP_001032387.1|  transposase for insertion ...   131   1e-29
 gi|146322288|ref|YP_001174685.1|  transposase AB of IS1068 [...   130   3e-29
 gi|565038|emb|CAA55220.1|  unnamed protein product [Lactococ...   129   6e-29
 gi|15672119|ref|NP_266293.1|  transposase of IS904B [Lactoco...   129   7e-29
 gi|15672035|ref|NP_266209.1|  transposase of IS904A [Lactoco...   129   7e-29
 gi|44029|emb|CAA36516.1|  unnamed protein product [Lactococc...   129   8e-29
 gi|125623001|ref|YP_001031484.1|  transposase for insertion ...   128   1e-28


InterPro Summary:  InterProScan

InterPro
IPR001584
Domain
Integrase, catalytic core
PF00665 [30-107]T 9.200004346619761E-16 PF00665 rve rve
PS50994 [23-107]T 0.0 PS50994 INTEGRASE INTEGRASE
InterPro
IPR012337
Domain
Polynucleotidyl transferase, Ribonuclease H fold
SSF53098 [25-107]T 2.2E-14 SSF53098 RNaseH_fold RNaseH_fold
noIPR
unintegrated
unintegrated
G3DSA:3.30.420.10 [25-107]T 7.299997894055561E-8 G3DSA:3.30.420.10 G3DSA:3.30.420.10 G3DSA:3.30.420.10


COGS Summary:  COGS Search
No hits to the COGs database.
Blocks Summary:  Blocks Search
No significant hits to the Blocks database.

 ProDom Summary:  Protein Domain Search
Residues 68-107 are 62% similar to a (TRANSPOSASE PLASMID OF ELEMENT) protein domain (PD001459 which is seen in Q9CB05_LACLA.


Paralogs:  Local Blast Search
SMu1234 has no significant similarity (blastp p-value < 1e-3) to any other gene in this genome.


Pfam Summary:  Pfam Search
No significant hits to the Pfam 11.0 database

 Top PDB Hits:
No significant hits to the NCBI PDB database.

Gene Protein Sequence:
MLKEACYKYKYYNRRRSSLRRPNLINPCFQTKGKNEIWLGDFTYIPTKAG
TLYLSVSVFIDIYRRKIVGWAMGNHMQGQLVTDAFNQAYHRERPKKGLIV
HTDQGSQ

Gene Nucleotide Sequence:  Sequence Viewer
ATGCTAAAGGAAGCCTGCTATAAATACAAGTACTATAACCGTCGACGTTC
CTCATTGAGACGTCCAAATTTGATTAATCCGTGTTTTCAAACAAAAGGTA
AAAATGAAATCTGGCTAGGGGATTTCACTTATATTCCGACAAAAGCAGGA
ACACTTTATTTATCTGTATCCGTCTTTATAGATATCTATAGAAGAAAGAT
TGTAGGTTGGGCGATGGGAAATCATATGCAAGGCCAGTTGGTAACAGATG
CTTTTAATCAAGCTTATCATAGAGAAAGACCTAAGAAAGGATTAATAGTC
CATACAGATCAAGGTTCTCAATAG

Los Alamos National Laboratory • Est 1943

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