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Streptococcus mutans Search Results

Record: 1 of 1  
MiniMap IGR1045 IGR1039 IGR1044 IGR1043 IGR1042 IGR1041 IGR1037 IGR1036 IGR1040 SMu1204 SMu1202 SMu1205 SMu1203 butA, - SMu1207 ftsX, - SMu1209 prfB, - SMu1211 SMu1206 SMu1208 SMu1201 SMu1204 SMu1202 SMu1205 SMu1203 butA, - SMu1207 ftsX, - SMu1209 prfB, - SMu1211 SMu1206 SMu1208 SMu1201 SMu1202 SMu1205 SMu1203 butA, - SMu1207 ftsX, - SMu1209 prfB, - SMu1211 SMu1206 ftsE, - SMu1210 ftsE, - SMu1210 SMu1204 SMu1208 SMu1201


LANL Gene ID: SMu1206

GenBank Locus Tag: SMU.1321c

DNA Molecule Name:
1  

GenBank ID:
24379735

Gene Name:


Definition:
conserved hypothetical protein

Cellular Location:
Cytoplasm [Evidence]

Gene Start:
1246210

Gene Stop:
1245032

Gene Length:
1179

Molecular Weight*:
45741

pI*:
5.20

Net Charge*:
-16.48

EC:
 

Functional Class:
Unknown  

Gene Ontology:
Molecular function
  GO:0003824    catalytic activity
  GO:0005524    ATP binding


Pathway: pathway table

Comment:



View in HOMD Genome Viewer

Blast Summary:  PSI-Blast Search
Limited matches in gapped BLAST to hypothetical proteins: residues 5-391 are 40% similar to Mesorhizobium loti (13472479|) and 42% similar to S.pneumoniae (15900768|).





The best hit to the Streptococcus agalactiae 2603 V/R genome is to SAG1042 (2e-05).


Top Blast Hits:  Updated monthly
Click here to view the entire PsiBlast results.
 gi|24379735|ref|NP_721690.1|  hypothetical protein SMU.1321c...   756   0.0  
 gi|52426177|ref|YP_089314.1|  hypothetical protein MS2122 [M...   611   e-173
 gi|153093619|gb|EDN74584.1|  hypothetical protein MHA_1673 [...   597   e-169
 gi|152979025|ref|YP_001344654.1|  phosphoribosylglycinamide ...   597   e-169
 gi|46143744|ref|ZP_00134462.2|  COG0458: Carbamoylphosphate ...   597   e-169
 gi|113461778|ref|YP_719847.1|  hypothetical protein HS_1642 ...   593   e-168
 gi|53728700|ref|ZP_00131789.2|  COG0458: Carbamoylphosphate ...   592   e-167
 gi|148655060|ref|YP_001275265.1|  Biotin carboxylase-like pr...   320   1e-85
 gi|156744015|ref|YP_001434144.1|  biotin carboxylase-like pr...   317   1e-84
 gi|13472479|ref|NP_104046.1|  hypothetical protein mll2789 [...   314   5e-84


InterPro Summary:  InterProScan

InterPro
IPR011761
Domain
ATP-grasp fold
PS50975 [121-312]T 0.0 PS50975 ATP_GRASP ATP_GRASP
InterPro
IPR013650
Domain
ATP-grasp fold, succinyl-CoA synthetase-type
PF08442 [121-157]T 0.0150000018756781 PF08442 ATP-grasp_2 ATP-grasp_2
InterPro
IPR013815
Domain
ATP-grasp fold, subdomain 1
G3DSA:3.30.1490.20 [129-195]T 1.4999997758335102E-4 G3DSA:3.30.1490.20 ATP_grasp_subdomain_1 ATP_grasp_subdomain_1
noIPR
unintegrated
unintegrated
PTHR23047 [114-248]T 1.2999992446818E-9 PTHR23047 PTHR23047 PTHR23047
SSF56059 [116-330]T 5.099999999999999E-32 SSF56059 SSF56059 SSF56059


COGS Summary:  COGS Search
BeTs to 5 clades of COG0439
COG name: Biotin carboxylase
Functional Class: I
The phylogenetic pattern of COG0439 is amt-YQ-CeBRhuj----inx
Number of proteins in this genome belonging to this COG is 3
Blocks Summary:  Blocks Search
No significant hits to the Blocks database.

 ProDom Summary:  Protein Domain Search
Residues 117-213 are 32% similar to a (LIGASE SYNTHETASE CARBOXYLASE COMPLETE PROTEOME) protein domain (PD000180 which is seen in O67483_AQUAE.


Paralogs:  Local Blast Search
SMu1206 is paralogously related (blast p-value < 1e-3) to SMu0784, a predicted carbamoyl-phosphate synthase, large subunit and SMu0044 a predicted phosphoribosylamine-glycine ligase.


Pfam Summary:  Pfam Search
No significant hits to the Pfam 11.0 database

 Top PDB Hits:
No significant hits to the NCBI PDB database.

Gene Protein Sequence:
MDRKMNFVMISPHFPANFETFAHRLYENGINTLGIADTPYEQLSQGLRDH
LTEYYRVDNMEDYDQVYRAVAYFAHKYGRIDRIESHNEYWLELDAHLRTD
FNVFGYKNEDMLSIKTKARMKEIFRKTGIKVARGRVFTSTEDARALTKEL
GFPVIIKPNSGVGASDTYKIKSAEELEDFFGYQNPTVDYIMEEFIDGDIV
TFDGLTDHEGNIVFYSSLEYSEAVLDTVEKDNDMFYYVPRDISPELIKLG
EQCVEAFNVKERFFHFEFFRIKKTKDLMALEVNCRPPGGLTIDMWDYAND
FDVFNEYAHIVKDNRFEAHITRPYNVVYIARKANKHYAHSIEDIETKFGH
HIIEIESVPGIFAKIMGEVGILARTETMNEMRDIICFAHAKI

Gene Nucleotide Sequence:  Sequence Viewer
ATGGATAGAAAAATGAATTTTGTAATGATTTCCCCCCATTTTCCAGCAAA
TTTTGAGACTTTCGCCCACCGTTTATATGAAAATGGTATCAATACACTAG
GGATTGCGGATACCCCTTATGAGCAATTAAGTCAGGGTTTACGTGATCAT
CTAACGGAGTATTACCGTGTTGATAATATGGAAGATTATGATCAGGTTTA
CCGTGCTGTTGCTTATTTTGCTCATAAGTATGGCAGAATTGATCGTATTG
AATCCCATAATGAATATTGGTTGGAATTAGATGCCCATTTGCGGACGGAT
TTTAATGTTTTTGGTTATAAAAATGAAGATATGCTTTCTATCAAAACGAA
AGCACGTATGAAAGAAATTTTCCGCAAGACAGGAATTAAAGTTGCTCGTG
GCCGCGTCTTTACTAGCACTGAAGATGCTCGTGCTTTGACTAAGGAACTC
GGTTTTCCGGTTATCATTAAACCCAACTCTGGTGTTGGTGCTTCGGATAC
ATACAAAATCAAGTCAGCTGAAGAATTAGAAGACTTTTTTGGCTATCAAA
ATCCCACAGTTGACTATATCATGGAAGAATTCATTGATGGTGATATCGTT
ACTTTCGATGGCTTGACAGATCACGAAGGCAATATTGTCTTTTATTCTAG
TTTGGAATATTCTGAAGCGGTTTTGGATACGGTAGAAAAAGATAACGATA
TGTTCTATTATGTCCCTCGCGACATCTCACCAGAGCTGATTAAACTAGGT
GAGCAATGTGTTGAAGCCTTCAATGTTAAAGAACGTTTCTTCCATTTTGA
ATTCTTCCGTATTAAAAAGACTAAAGATTTAATGGCGCTTGAAGTTAACT
GCCGTCCGCCAGGTGGCCTGACCATTGATATGTGGGACTATGCCAATGAT
TTTGATGTTTTTAATGAGTATGCCCATATTGTTAAAGACAATCGTTTTGA
AGCTCATATCACTCGTCCTTATAACGTTGTTTATATAGCTCGTAAGGCTA
ATAAACATTATGCGCATAGCATAGAGGATATTGAAACTAAATTTGGCCAT
CATATTATTGAAATTGAGTCTGTTCCGGGTATTTTTGCTAAAATTATGGG
AGAAGTTGGTATTTTAGCTCGAACAGAAACCATGAATGAAATGCGTGACA
TTATCTGTTTTGCTCATGCTAAAATCTAA

Los Alamos National Laboratory • Est 1943

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