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Streptococcus mutans Search Results

Record: 1 of 1  
MiniMap IGR559 IGR558 IGR553 IGR555 IGR560 IGR556 IGR552 IGR551 IGR561 IGR564 IGR562 IGR554 IGR557 IGR563 fer, - SMu0634 SMu0641 SMu0645 gpmB, - SMu0640 SMu0643 SMu0646 SMu0644 rpmI, - SMu0638 rplT, - SMu0639 SMu0635 thmA, - SMu0633 SMu0647 infC, - SMu0637 cmk, - SMu0636 pepT, - SMu0632 fer, - SMu0634 SMu0641 SMu0645 gpmB, - SMu0640 SMu0643 SMu0646 SMu0644 rpmI, - SMu0638 rplT, - SMu0639 SMu0635 thmA, - SMu0633 SMu0647 infC, - SMu0637 cmk, - SMu0636 pepT, - SMu0632 fer, - SMu0634 SMu0645 gpmB, - SMu0640 SMu0643 SMu0646 SMu0644 ydbF, - SMu0642 SMu0641 ydbF, - SMu0642 rplT, - SMu0639 SMu0635 infC, - SMu0637 cmk, - SMu0636 pepT, - SMu0632 SMu0648 SMu0647 rpmI, - SMu0638 thmA, - SMu0633 SMu0648


LANL Gene ID: SMu0642

GenBank Locus Tag: SMU.702c

DNA Molecule Name:
1  

GenBank ID:
24379173

Gene Name:
ydbF  

Definition:
transcriptional regulator

Cellular Location:
Cytoplasm [Evidence]

Gene Start:
663490

Gene Stop:
663017

Gene Length:
474

Molecular Weight*:
17294

pI*:
10.40

Net Charge*:
9.20

EC:
 

Functional Class:
Transcription; Transcription factors  

Gene Ontology:

Pathway: pathway table

Comment:


View in HOMD Genome Viewer

Blast Summary:  PSI-Blast Search
Several matches in gapped BLAST to transcription regulator: residues 1-157 are 79% similar to the protein in S.pyogenes (15674682|). Residues 1-157 are 70% similar to the protein from Lactococcus lactis subsp.lactis (15672298|).






The best hit to the Streptococcus agalactiae 2603 V/R genome is to SAG0753 (2e-67).


Top Blast Hits:  Updated monthly
Click here to view the entire PsiBlast results.
 gi|24379173|ref|NP_721128.1|  putative transcriptional regul...   265   6e-70
 gi|71903143|ref|YP_279946.1|  transcriptional regulator [Str...   231   9e-60
 gi|22536917|ref|NP_687768.1|  ebsC family protein, putative ...   231   9e-60
 gi|55820765|ref|YP_139207.1|  transcriptional regulator [Str...   229   3e-59
 gi|81097342|ref|ZP_00875634.1|  YbaK/prolyl-tRNA synthetase ...   228   8e-59
 gi|94990001|ref|YP_598101.1|  Transcriptional regulator [Str...   225   7e-58
 gi|15674682|ref|NP_268856.1|  putative transcription regulat...   222   6e-57
 gi|94993913|ref|YP_602011.1|  Transcriptional regulator [Str...   221   8e-57
 gi|15672298|ref|NP_266472.1|  transcription regulator [Lacto...   212   6e-54
 gi|116511171|ref|YP_808387.1|  hypothetical protein LACR_035...   211   1e-53


InterPro Summary:  InterProScan

InterPro
IPR007214
Domain
YbaK/prolyl-tRNA synthetase associated region
PF04073 [18-155]T 3.499994668639491E-49 PF04073 YbaK YbaK
noIPR
unintegrated
unintegrated
G3DSA:3.90.960.10 [9-155]T 3.99998544139379E-36 G3DSA:3.90.960.10 G3DSA:3.90.960.10 G3DSA:3.90.960.10
SSF55826 [6-155]T 1.1E-33 SSF55826 SSF55826 SSF55826


COGS Summary:  COGS Search
No hits to the COGs database.
Blocks Summary:  Blocks Search
No significant hits to the Blocks database.

 ProDom Summary:  Protein Domain Search
Residues 28-139 are 74% similar to a (PROTEOME COMPLETE TRANSCRIPTION) protein domain (PD009524 which is seen in Q9CIP0_LACLA.


Paralogs:  Local Blast Search
SMu0642 has no significant similarity (blastp p-value < 1e-3) to any other gene in this genome.


Pfam Summary:  Pfam Search
Residues 18 to 155 (E-value = 5.8e-51) place SMu0642 in the YbaK family which is described as YbaK / prolyl-tRNA synthetases associated domain (PF04073)

 Top PDB Hits:
No significant hits to the NCBI PDB database.

Gene Protein Sequence:
MSKKKKLKKTLVEQILDKAKIKHDSLALNALEGKLPEDIQKEDIFKTLAL
TGDKTGPLIGIIPITEHLSEKKLAKVSANKKVTMIPQKELQKITGYVHGA
NNPVGIRQKHHFPIFIDSIALEKGQIIVSAGEIGRSIRINSQVLADFVGA
QFADLKE

Gene Nucleotide Sequence:  Sequence Viewer
ATGAGCAAGAAAAAGAAATTAAAGAAAACCTTGGTTGAGCAAATTTTAGA
TAAGGCTAAGATTAAACATGACAGCTTAGCACTCAATGCCTTAGAAGGCA
AATTGCCAGAAGATATCCAAAAGGAGGATATTTTTAAAACACTGGCACTA
ACTGGCGATAAAACTGGACCACTTATTGGGATTATTCCCATAACAGAACA
TCTTTCTGAAAAGAAATTAGCCAAAGTATCTGCAAATAAAAAAGTTACCA
TGATTCCCCAAAAAGAACTCCAAAAAATAACAGGCTATGTTCATGGTGCT
AATAATCCTGTTGGTATTAGACAAAAGCATCATTTTCCAATTTTTATTGA
TTCTATAGCTTTAGAAAAAGGACAAATCATTGTATCAGCAGGTGAGATAG
GACGTTCCATTCGTATCAACAGCCAAGTTTTAGCTGACTTTGTTGGAGCT
CAATTTGCTGATTTGAAGGAGTGA

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